co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000469: negative regulation of peroxidase activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
4	GO:2001294: malonyl-CoA catabolic process	0.00E+00
5	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
6	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
7	GO:2000505: regulation of energy homeostasis	0.00E+00
8	GO:0006021: inositol biosynthetic process	4.54E-05
9	GO:0007155: cell adhesion	2.41E-04
10	GO:0010362: negative regulation of anion channel activity by blue light	2.57E-04
11	GO:0015969: guanosine tetraphosphate metabolic process	2.57E-04
12	GO:0031426: polycistronic mRNA processing	2.57E-04
13	GO:0071028: nuclear mRNA surveillance	2.57E-04
14	GO:0006659: phosphatidylserine biosynthetic process	2.57E-04
15	GO:1902458: positive regulation of stomatal opening	2.57E-04
16	GO:0034475: U4 snRNA 3'-end processing	5.68E-04
17	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.68E-04
18	GO:0031125: rRNA 3'-end processing	5.68E-04
19	GO:0010155: regulation of proton transport	5.68E-04
20	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.68E-04
21	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	5.68E-04
22	GO:0010143: cutin biosynthetic process	8.40E-04
23	GO:0016075: rRNA catabolic process	9.22E-04
24	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	9.22E-04
25	GO:0006753: nucleoside phosphate metabolic process	9.22E-04
26	GO:0042753: positive regulation of circadian rhythm	1.04E-03
27	GO:0010239: chloroplast mRNA processing	1.32E-03
28	GO:0006164: purine nucleotide biosynthetic process	1.32E-03
29	GO:0006168: adenine salvage	1.32E-03
30	GO:0006166: purine ribonucleoside salvage	1.32E-03
31	GO:0051322: anaphase	1.76E-03
32	GO:2000306: positive regulation of photomorphogenesis	1.76E-03
33	GO:0008295: spermidine biosynthetic process	1.76E-03
34	GO:0032366: intracellular sterol transport	1.76E-03
35	GO:0048442: sepal development	1.76E-03
36	GO:0010158: abaxial cell fate specification	2.25E-03
37	GO:0034052: positive regulation of plant-type hypersensitive response	2.25E-03
38	GO:0009904: chloroplast accumulation movement	2.25E-03
39	GO:0045038: protein import into chloroplast thylakoid membrane	2.25E-03
40	GO:1902183: regulation of shoot apical meristem development	2.25E-03
41	GO:0044209: AMP salvage	2.25E-03
42	GO:0007018: microtubule-based movement	2.43E-03
43	GO:0009791: post-embryonic development	2.61E-03
44	GO:0045962: positive regulation of development, heterochronic	2.77E-03
45	GO:0000741: karyogamy	2.77E-03
46	GO:0046855: inositol phosphate dephosphorylation	2.77E-03
47	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.77E-03
48	GO:0042372: phylloquinone biosynthetic process	3.33E-03
49	GO:0010076: maintenance of floral meristem identity	3.33E-03
50	GO:0048280: vesicle fusion with Golgi apparatus	3.33E-03
51	GO:0009903: chloroplast avoidance movement	3.33E-03
52	GO:0030488: tRNA methylation	3.33E-03
53	GO:0009648: photoperiodism	3.33E-03
54	GO:0015937: coenzyme A biosynthetic process	3.93E-03
55	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.93E-03
56	GO:0030307: positive regulation of cell growth	3.93E-03
57	GO:0043068: positive regulation of programmed cell death	4.56E-03
58	GO:0010078: maintenance of root meristem identity	4.56E-03
59	GO:0009704: de-etiolation	4.56E-03
60	GO:2000070: regulation of response to water deprivation	4.56E-03
61	GO:0015996: chlorophyll catabolic process	5.22E-03
62	GO:0007186: G-protein coupled receptor signaling pathway	5.22E-03
63	GO:0006997: nucleus organization	5.22E-03
64	GO:0043562: cellular response to nitrogen levels	5.22E-03
65	GO:0006811: ion transport	5.79E-03
66	GO:0048507: meristem development	5.92E-03
67	GO:2000024: regulation of leaf development	5.92E-03
68	GO:0006189: 'de novo' IMP biosynthetic process	5.92E-03
69	GO:0048527: lateral root development	6.07E-03
70	GO:0009638: phototropism	6.64E-03
71	GO:0010018: far-red light signaling pathway	6.64E-03
72	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.64E-03
73	GO:0009637: response to blue light	6.65E-03
74	GO:0006896: Golgi to vacuole transport	7.40E-03
75	GO:0048441: petal development	7.40E-03
76	GO:0043069: negative regulation of programmed cell death	7.40E-03
77	GO:0010192: mucilage biosynthetic process	7.40E-03
78	GO:0006631: fatty acid metabolic process	7.91E-03
79	GO:1903507: negative regulation of nucleic acid-templated transcription	8.19E-03
80	GO:0009684: indoleacetic acid biosynthetic process	8.19E-03
81	GO:0000038: very long-chain fatty acid metabolic process	8.19E-03
82	GO:0006790: sulfur compound metabolic process	9.00E-03
83	GO:0016024: CDP-diacylglycerol biosynthetic process	9.00E-03
84	GO:0045037: protein import into chloroplast stroma	9.00E-03
85	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
86	GO:0009785: blue light signaling pathway	9.85E-03
87	GO:0030048: actin filament-based movement	9.85E-03
88	GO:0009718: anthocyanin-containing compound biosynthetic process	9.85E-03
89	GO:0009767: photosynthetic electron transport chain	9.85E-03
90	GO:0048467: gynoecium development	1.07E-02
91	GO:0048440: carpel development	1.07E-02
92	GO:0010207: photosystem II assembly	1.07E-02
93	GO:0009825: multidimensional cell growth	1.16E-02
94	GO:0009585: red, far-red light phototransduction	1.16E-02
95	GO:0019853: L-ascorbic acid biosynthetic process	1.16E-02
96	GO:0090351: seedling development	1.16E-02
97	GO:0046854: phosphatidylinositol phosphorylation	1.16E-02
98	GO:0000027: ribosomal large subunit assembly	1.35E-02
99	GO:0007010: cytoskeleton organization	1.35E-02
100	GO:0009944: polarity specification of adaxial/abaxial axis	1.35E-02
101	GO:0007017: microtubule-based process	1.45E-02
102	GO:0048511: rhythmic process	1.55E-02
103	GO:0035428: hexose transmembrane transport	1.65E-02
104	GO:0009814: defense response, incompatible interaction	1.65E-02
105	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.65E-02
106	GO:0006396: RNA processing	1.70E-02
107	GO:0071369: cellular response to ethylene stimulus	1.76E-02
108	GO:0048443: stamen development	1.86E-02
109	GO:0019722: calcium-mediated signaling	1.86E-02
110	GO:0042147: retrograde transport, endosome to Golgi	1.97E-02
111	GO:0080022: primary root development	2.09E-02
112	GO:0010087: phloem or xylem histogenesis	2.09E-02
113	GO:0006629: lipid metabolic process	2.10E-02
114	GO:0045489: pectin biosynthetic process	2.20E-02
115	GO:0010154: fruit development	2.20E-02
116	GO:0009958: positive gravitropism	2.20E-02
117	GO:0006520: cellular amino acid metabolic process	2.20E-02
118	GO:0010197: polar nucleus fusion	2.20E-02
119	GO:0010182: sugar mediated signaling pathway	2.20E-02
120	GO:0046323: glucose import	2.20E-02
121	GO:0009646: response to absence of light	2.32E-02
122	GO:0006623: protein targeting to vacuole	2.43E-02
123	GO:0048825: cotyledon development	2.43E-02
124	GO:0008654: phospholipid biosynthetic process	2.43E-02
125	GO:0009851: auxin biosynthetic process	2.43E-02
126	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.56E-02
127	GO:0006891: intra-Golgi vesicle-mediated transport	2.56E-02
128	GO:0007264: small GTPase mediated signal transduction	2.68E-02
129	GO:0010583: response to cyclopentenone	2.68E-02
130	GO:1901657: glycosyl compound metabolic process	2.80E-02
131	GO:0010252: auxin homeostasis	2.93E-02
132	GO:0009639: response to red or far red light	2.93E-02
133	GO:0007267: cell-cell signaling	3.06E-02
134	GO:0000910: cytokinesis	3.19E-02
135	GO:0016126: sterol biosynthetic process	3.32E-02
136	GO:0010027: thylakoid membrane organization	3.32E-02
137	GO:0009627: systemic acquired resistance	3.59E-02
138	GO:0015995: chlorophyll biosynthetic process	3.73E-02
139	GO:0006888: ER to Golgi vesicle-mediated transport	3.73E-02
140	GO:0016311: dephosphorylation	3.87E-02
141	GO:0018298: protein-chromophore linkage	4.01E-02
142	GO:0009733: response to auxin	4.08E-02
143	GO:0000160: phosphorelay signal transduction system	4.16E-02
144	GO:0009416: response to light stimulus	4.28E-02
145	GO:0006499: N-terminal protein myristoylation	4.30E-02
146	GO:0010119: regulation of stomatal movement	4.45E-02
147	GO:0007568: aging	4.45E-02
148	GO:0035556: intracellular signal transduction	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:1990534: thermospermine oxidase activity	0.00E+00
6	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
7	GO:0008017: microtubule binding	2.19E-05
8	GO:0000293: ferric-chelate reductase activity	1.05E-04
9	GO:0080132: fatty acid alpha-hydroxylase activity	2.57E-04
10	GO:0010945: CoA pyrophosphatase activity	2.57E-04
11	GO:0004328: formamidase activity	2.57E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.57E-04
13	GO:0003777: microtubule motor activity	3.04E-04
14	GO:0008934: inositol monophosphate 1-phosphatase activity	5.68E-04
15	GO:0052833: inositol monophosphate 4-phosphatase activity	5.68E-04
16	GO:0015929: hexosaminidase activity	5.68E-04
17	GO:0004563: beta-N-acetylhexosaminidase activity	5.68E-04
18	GO:0004512: inositol-3-phosphate synthase activity	5.68E-04
19	GO:0048531: beta-1,3-galactosyltransferase activity	5.68E-04
20	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.68E-04
21	GO:0008728: GTP diphosphokinase activity	5.68E-04
22	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.68E-04
23	GO:0004766: spermidine synthase activity	5.68E-04
24	GO:0052832: inositol monophosphate 3-phosphatase activity	5.68E-04
25	GO:0050734: hydroxycinnamoyltransferase activity	9.22E-04
26	GO:0003913: DNA photolyase activity	9.22E-04
27	GO:0000254: C-4 methylsterol oxidase activity	1.32E-03
28	GO:0048027: mRNA 5'-UTR binding	1.32E-03
29	GO:0003999: adenine phosphoribosyltransferase activity	1.32E-03
30	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.32E-03
31	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.32E-03
32	GO:0009882: blue light photoreceptor activity	1.32E-03
33	GO:0016846: carbon-sulfur lyase activity	2.25E-03
34	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.77E-03
35	GO:0042578: phosphoric ester hydrolase activity	2.77E-03
36	GO:0000210: NAD+ diphosphatase activity	2.77E-03
37	GO:0016208: AMP binding	2.77E-03
38	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.77E-03
39	GO:0016746: transferase activity, transferring acyl groups	2.89E-03
40	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.33E-03
41	GO:0016832: aldehyde-lyase activity	3.33E-03
42	GO:0009927: histidine phosphotransfer kinase activity	3.33E-03
43	GO:0004017: adenylate kinase activity	3.33E-03
44	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.33E-03
45	GO:0043022: ribosome binding	4.56E-03
46	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	5.22E-03
47	GO:0103095: wax ester synthase activity	5.22E-03
48	GO:0008173: RNA methyltransferase activity	5.22E-03
49	GO:0016491: oxidoreductase activity	5.74E-03
50	GO:0003993: acid phosphatase activity	6.96E-03
51	GO:0047372: acylglycerol lipase activity	8.19E-03
52	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.00E-03
53	GO:0000175: 3'-5'-exoribonuclease activity	9.85E-03
54	GO:0008081: phosphoric diester hydrolase activity	9.85E-03
55	GO:0000155: phosphorelay sensor kinase activity	9.85E-03
56	GO:0008131: primary amine oxidase activity	1.07E-02
57	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.07E-02
58	GO:0005506: iron ion binding	1.07E-02
59	GO:0003774: motor activity	1.07E-02
60	GO:0008146: sulfotransferase activity	1.16E-02
61	GO:0005528: FK506 binding	1.35E-02
62	GO:0003714: transcription corepressor activity	1.35E-02
63	GO:0052689: carboxylic ester hydrolase activity	1.46E-02
64	GO:0008408: 3'-5' exonuclease activity	1.55E-02
65	GO:0016874: ligase activity	1.56E-02
66	GO:0030570: pectate lyase activity	1.76E-02
67	GO:0010181: FMN binding	2.32E-02
68	GO:0005355: glucose transmembrane transporter activity	2.32E-02
69	GO:0016791: phosphatase activity	2.93E-02
70	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.06E-02
71	GO:0102483: scopolin beta-glucosidase activity	3.73E-02
72	GO:0030247: polysaccharide binding	3.73E-02
73	GO:0004721: phosphoprotein phosphatase activity	3.73E-02
74	GO:0003824: catalytic activity	3.95E-02
75	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.45E-02
76	GO:0016788: hydrolase activity, acting on ester bonds	4.50E-02