Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
2GO:0015690: aluminum cation transport0.00E+00
3GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress0.00E+00
4GO:0002376: immune system process0.00E+00
5GO:0033587: shikimate biosynthetic process0.00E+00
6GO:0010200: response to chitin1.02E-11
7GO:0009737: response to abscisic acid1.64E-05
8GO:0009651: response to salt stress1.84E-05
9GO:0009751: response to salicylic acid5.64E-05
10GO:0006635: fatty acid beta-oxidation1.23E-04
11GO:0051938: L-glutamate import1.67E-04
12GO:0010941: regulation of cell death1.67E-04
13GO:0010421: hydrogen peroxide-mediated programmed cell death1.67E-04
14GO:0006562: proline catabolic process1.67E-04
15GO:0007229: integrin-mediated signaling pathway1.67E-04
16GO:0050691: regulation of defense response to virus by host1.67E-04
17GO:1900384: regulation of flavonol biosynthetic process1.67E-04
18GO:0009414: response to water deprivation2.20E-04
19GO:0009611: response to wounding2.38E-04
20GO:0008361: regulation of cell size3.60E-04
21GO:0043091: L-arginine import3.78E-04
22GO:0010133: proline catabolic process to glutamate3.78E-04
23GO:0015802: basic amino acid transport3.78E-04
24GO:0019725: cellular homeostasis3.78E-04
25GO:0071497: cellular response to freezing3.78E-04
26GO:0009266: response to temperature stimulus4.63E-04
27GO:0007034: vacuolar transport4.63E-04
28GO:0006470: protein dephosphorylation4.99E-04
29GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process6.19E-04
30GO:0009653: anatomical structure morphogenesis6.19E-04
31GO:0009062: fatty acid catabolic process6.19E-04
32GO:0046836: glycolipid transport8.83E-04
33GO:0070301: cellular response to hydrogen peroxide8.83E-04
34GO:0006537: glutamate biosynthetic process8.83E-04
35GO:0071786: endoplasmic reticulum tubular network organization8.83E-04
36GO:0051289: protein homotetramerization8.83E-04
37GO:0080024: indolebutyric acid metabolic process8.83E-04
38GO:0001676: long-chain fatty acid metabolic process8.83E-04
39GO:0009620: response to fungus1.14E-03
40GO:1901141: regulation of lignin biosynthetic process1.17E-03
41GO:0046345: abscisic acid catabolic process1.17E-03
42GO:0010483: pollen tube reception1.17E-03
43GO:0009652: thigmotropism1.17E-03
44GO:0045088: regulation of innate immune response1.17E-03
45GO:1902584: positive regulation of response to water deprivation1.17E-03
46GO:0006621: protein retention in ER lumen1.17E-03
47GO:0015867: ATP transport1.17E-03
48GO:1901002: positive regulation of response to salt stress1.17E-03
49GO:0009646: response to absence of light1.33E-03
50GO:0010225: response to UV-C1.48E-03
51GO:0045927: positive regulation of growth1.48E-03
52GO:0015866: ADP transport1.83E-03
53GO:0032973: amino acid export1.83E-03
54GO:0009759: indole glucosinolate biosynthetic process1.83E-03
55GO:0034389: lipid particle organization2.19E-03
56GO:0042372: phylloquinone biosynthetic process2.19E-03
57GO:0045926: negative regulation of growth2.19E-03
58GO:0009612: response to mechanical stimulus2.19E-03
59GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.30E-03
60GO:0043090: amino acid import2.58E-03
61GO:1900056: negative regulation of leaf senescence2.58E-03
62GO:0080186: developmental vegetative growth2.58E-03
63GO:0070370: cellular heat acclimation2.58E-03
64GO:0009787: regulation of abscisic acid-activated signaling pathway2.99E-03
65GO:0030968: endoplasmic reticulum unfolded protein response3.41E-03
66GO:0010099: regulation of photomorphogenesis3.41E-03
67GO:0042742: defense response to bacterium3.70E-03
68GO:0006979: response to oxidative stress3.75E-03
69GO:0006351: transcription, DNA-templated3.79E-03
70GO:0009835: fruit ripening3.86E-03
71GO:0006098: pentose-phosphate shunt3.86E-03
72GO:0080144: amino acid homeostasis3.86E-03
73GO:0010112: regulation of systemic acquired resistance3.86E-03
74GO:0006970: response to osmotic stress4.84E-03
75GO:0009723: response to ethylene5.31E-03
76GO:0009682: induced systemic resistance5.32E-03
77GO:0052544: defense response by callose deposition in cell wall5.32E-03
78GO:0072593: reactive oxygen species metabolic process5.32E-03
79GO:0012501: programmed cell death5.84E-03
80GO:0002213: defense response to insect5.84E-03
81GO:0015706: nitrate transport5.84E-03
82GO:0046777: protein autophosphorylation6.31E-03
83GO:0009887: animal organ morphogenesis6.93E-03
84GO:0034605: cellular response to heat6.93E-03
85GO:0002237: response to molecule of bacterial origin6.93E-03
86GO:0046854: phosphatidylinositol phosphorylation7.50E-03
87GO:0042343: indole glucosinolate metabolic process7.50E-03
88GO:0010167: response to nitrate7.50E-03
89GO:0090351: seedling development7.50E-03
90GO:0000162: tryptophan biosynthetic process8.10E-03
91GO:0009695: jasmonic acid biosynthetic process9.33E-03
92GO:0006629: lipid metabolic process9.51E-03
93GO:0098542: defense response to other organism9.97E-03
94GO:0019915: lipid storage9.97E-03
95GO:0009269: response to desiccation9.97E-03
96GO:0003333: amino acid transmembrane transport9.97E-03
97GO:0009753: response to jasmonic acid1.04E-02
98GO:0031348: negative regulation of defense response1.06E-02
99GO:0009625: response to insect1.13E-02
100GO:0009693: ethylene biosynthetic process1.13E-02
101GO:0070417: cellular response to cold1.27E-02
102GO:0009873: ethylene-activated signaling pathway1.32E-02
103GO:0010118: stomatal movement1.34E-02
104GO:0010150: leaf senescence1.53E-02
105GO:0008654: phospholipid biosynthetic process1.56E-02
106GO:0006355: regulation of transcription, DNA-templated1.63E-02
107GO:0010193: response to ozone1.64E-02
108GO:0016032: viral process1.72E-02
109GO:0009617: response to bacterium1.83E-02
110GO:0019760: glucosinolate metabolic process1.88E-02
111GO:0051607: defense response to virus2.04E-02
112GO:0009911: positive regulation of flower development2.13E-02
113GO:0009409: response to cold2.15E-02
114GO:0042128: nitrate assimilation2.30E-02
115GO:0048573: photoperiodism, flowering2.39E-02
116GO:0046686: response to cadmium ion2.64E-02
117GO:0009407: toxin catabolic process2.76E-02
118GO:0010043: response to zinc ion2.85E-02
119GO:0007568: aging2.85E-02
120GO:0010119: regulation of stomatal movement2.85E-02
121GO:0006865: amino acid transport2.95E-02
122GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.05E-02
123GO:0016192: vesicle-mediated transport3.10E-02
124GO:0006839: mitochondrial transport3.34E-02
125GO:0042542: response to hydrogen peroxide3.55E-02
126GO:0045892: negative regulation of transcription, DNA-templated3.58E-02
127GO:0009744: response to sucrose3.65E-02
128GO:0051707: response to other organism3.65E-02
129GO:0008283: cell proliferation3.65E-02
130GO:0007275: multicellular organism development3.71E-02
131GO:0009636: response to toxic substance3.96E-02
132GO:0031347: regulation of defense response4.18E-02
133GO:0042538: hyperosmotic salinity response4.29E-02
134GO:0009408: response to heat4.34E-02
135GO:0009809: lignin biosynthetic process4.51E-02
136GO:0006486: protein glycosylation4.51E-02
137GO:0006857: oligopeptide transport4.73E-02
138GO:0008152: metabolic process4.77E-02
139GO:0009909: regulation of flower development4.84E-02
140GO:0006468: protein phosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0004168: dolichol kinase activity0.00E+00
2GO:0034639: L-amino acid efflux transmembrane transporter activity0.00E+00
3GO:0005046: KDEL sequence binding0.00E+00
4GO:0043565: sequence-specific DNA binding2.23E-05
5GO:0090353: polygalacturonase inhibitor activity1.67E-04
6GO:0010179: IAA-Ala conjugate hydrolase activity1.67E-04
7GO:0008809: carnitine racemase activity1.67E-04
8GO:2001227: quercitrin binding1.67E-04
9GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity1.67E-04
10GO:0004425: indole-3-glycerol-phosphate synthase activity1.67E-04
11GO:0004657: proline dehydrogenase activity1.67E-04
12GO:2001147: camalexin binding1.67E-04
13GO:0043424: protein histidine kinase binding7.02E-04
14GO:0004165: dodecenoyl-CoA delta-isomerase activity8.83E-04
15GO:0015189: L-lysine transmembrane transporter activity8.83E-04
16GO:0017089: glycolipid transporter activity8.83E-04
17GO:0015181: arginine transmembrane transporter activity8.83E-04
18GO:0010178: IAA-amino acid conjugate hydrolase activity8.83E-04
19GO:0016656: monodehydroascorbate reductase (NADH) activity8.83E-04
20GO:0051861: glycolipid binding1.17E-03
21GO:0046923: ER retention sequence binding1.17E-03
22GO:0005313: L-glutamate transmembrane transporter activity1.17E-03
23GO:0003995: acyl-CoA dehydrogenase activity1.17E-03
24GO:0010294: abscisic acid glucosyltransferase activity1.48E-03
25GO:0003997: acyl-CoA oxidase activity1.48E-03
26GO:0016301: kinase activity1.63E-03
27GO:0003700: transcription factor activity, sequence-specific DNA binding1.64E-03
28GO:0004722: protein serine/threonine phosphatase activity1.64E-03
29GO:0004605: phosphatidate cytidylyltransferase activity1.83E-03
30GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.95E-03
31GO:0008237: metallopeptidase activity1.95E-03
32GO:0015217: ADP transmembrane transporter activity2.19E-03
33GO:0003950: NAD+ ADP-ribosyltransferase activity2.19E-03
34GO:0005347: ATP transmembrane transporter activity2.19E-03
35GO:0043295: glutathione binding2.58E-03
36GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity2.99E-03
37GO:0004430: 1-phosphatidylinositol 4-kinase activity3.41E-03
38GO:0044212: transcription regulatory region DNA binding3.70E-03
39GO:0004712: protein serine/threonine/tyrosine kinase activity3.91E-03
40GO:0047617: acyl-CoA hydrolase activity4.33E-03
41GO:0015112: nitrate transmembrane transporter activity4.33E-03
42GO:0015174: basic amino acid transmembrane transporter activity4.33E-03
43GO:0005543: phospholipid binding5.32E-03
44GO:0016298: lipase activity6.43E-03
45GO:0015171: amino acid transmembrane transporter activity6.87E-03
46GO:0008083: growth factor activity6.93E-03
47GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.58E-03
48GO:0019901: protein kinase binding1.56E-02
49GO:0004872: receptor activity1.56E-02
50GO:0004197: cysteine-type endopeptidase activity1.72E-02
51GO:0042802: identical protein binding1.95E-02
52GO:0004806: triglyceride lipase activity2.39E-02
53GO:0004721: phosphoprotein phosphatase activity2.39E-02
54GO:0050660: flavin adenine dinucleotide binding2.75E-02
55GO:0050897: cobalt ion binding2.85E-02
56GO:0003746: translation elongation factor activity3.05E-02
57GO:0005507: copper ion binding3.06E-02
58GO:0000987: core promoter proximal region sequence-specific DNA binding3.14E-02
59GO:0046872: metal ion binding3.39E-02
60GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.53E-02
61GO:0004364: glutathione transferase activity3.55E-02
62GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.92E-02
63GO:0005515: protein binding4.08E-02
64GO:0016787: hydrolase activity4.20E-02
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Gene type



Gene DE type