GO Enrichment Analysis of Co-expressed Genes with
AT4G25080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010335: response to non-ionic osmotic stress | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 6 | GO:0015670: carbon dioxide transport | 0.00E+00 |
| 7 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 8 | GO:0034337: RNA folding | 0.00E+00 |
| 9 | GO:0006982: response to lipid hydroperoxide | 0.00E+00 |
| 10 | GO:0010207: photosystem II assembly | 4.40E-08 |
| 11 | GO:0055114: oxidation-reduction process | 5.62E-06 |
| 12 | GO:0006094: gluconeogenesis | 6.73E-05 |
| 13 | GO:0015994: chlorophyll metabolic process | 6.89E-05 |
| 14 | GO:0010143: cutin biosynthetic process | 8.15E-05 |
| 15 | GO:0009658: chloroplast organization | 1.46E-04 |
| 16 | GO:0042549: photosystem II stabilization | 1.56E-04 |
| 17 | GO:0019722: calcium-mediated signaling | 2.57E-04 |
| 18 | GO:0044550: secondary metabolite biosynthetic process | 2.86E-04 |
| 19 | GO:0010362: negative regulation of anion channel activity by blue light | 3.29E-04 |
| 20 | GO:0015969: guanosine tetraphosphate metabolic process | 3.29E-04 |
| 21 | GO:0046467: membrane lipid biosynthetic process | 3.29E-04 |
| 22 | GO:0010426: DNA methylation on cytosine within a CHH sequence | 3.29E-04 |
| 23 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.29E-04 |
| 24 | GO:0071277: cellular response to calcium ion | 3.29E-04 |
| 25 | GO:0000481: maturation of 5S rRNA | 3.29E-04 |
| 26 | GO:0015801: aromatic amino acid transport | 3.29E-04 |
| 27 | GO:1904964: positive regulation of phytol biosynthetic process | 3.29E-04 |
| 28 | GO:0043087: regulation of GTPase activity | 3.29E-04 |
| 29 | GO:0071461: cellular response to redox state | 3.29E-04 |
| 30 | GO:0046167: glycerol-3-phosphate biosynthetic process | 3.29E-04 |
| 31 | GO:0043007: maintenance of rDNA | 3.29E-04 |
| 32 | GO:1902458: positive regulation of stomatal opening | 3.29E-04 |
| 33 | GO:0009704: de-etiolation | 3.48E-04 |
| 34 | GO:0016559: peroxisome fission | 3.48E-04 |
| 35 | GO:0006098: pentose-phosphate shunt | 5.12E-04 |
| 36 | GO:0007267: cell-cell signaling | 6.42E-04 |
| 37 | GO:0042819: vitamin B6 biosynthetic process | 7.18E-04 |
| 38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.18E-04 |
| 39 | GO:0035304: regulation of protein dephosphorylation | 7.18E-04 |
| 40 | GO:0080005: photosystem stoichiometry adjustment | 7.18E-04 |
| 41 | GO:0006650: glycerophospholipid metabolic process | 7.18E-04 |
| 42 | GO:0010155: regulation of proton transport | 7.18E-04 |
| 43 | GO:0006729: tetrahydrobiopterin biosynthetic process | 7.18E-04 |
| 44 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 7.18E-04 |
| 45 | GO:0015790: UDP-xylose transport | 7.18E-04 |
| 46 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 7.18E-04 |
| 47 | GO:0080185: effector dependent induction by symbiont of host immune response | 7.18E-04 |
| 48 | GO:0015995: chlorophyll biosynthetic process | 9.11E-04 |
| 49 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.28E-04 |
| 50 | GO:0006000: fructose metabolic process | 1.16E-03 |
| 51 | GO:0046168: glycerol-3-phosphate catabolic process | 1.16E-03 |
| 52 | GO:0044375: regulation of peroxisome size | 1.16E-03 |
| 53 | GO:0046621: negative regulation of organ growth | 1.16E-03 |
| 54 | GO:0007568: aging | 1.24E-03 |
| 55 | GO:0015979: photosynthesis | 1.41E-03 |
| 56 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.47E-03 |
| 57 | GO:0006833: water transport | 1.47E-03 |
| 58 | GO:0046653: tetrahydrofolate metabolic process | 1.67E-03 |
| 59 | GO:0006072: glycerol-3-phosphate metabolic process | 1.67E-03 |
| 60 | GO:0008615: pyridoxine biosynthetic process | 1.67E-03 |
| 61 | GO:0042823: pyridoxal phosphate biosynthetic process | 1.67E-03 |
| 62 | GO:2001141: regulation of RNA biosynthetic process | 1.67E-03 |
| 63 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.67E-03 |
| 64 | GO:0009152: purine ribonucleotide biosynthetic process | 1.67E-03 |
| 65 | GO:0006631: fatty acid metabolic process | 1.73E-03 |
| 66 | GO:2000306: positive regulation of photomorphogenesis | 2.24E-03 |
| 67 | GO:0010600: regulation of auxin biosynthetic process | 2.24E-03 |
| 68 | GO:0006465: signal peptide processing | 2.87E-03 |
| 69 | GO:0009904: chloroplast accumulation movement | 2.87E-03 |
| 70 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.87E-03 |
| 71 | GO:0009107: lipoate biosynthetic process | 2.87E-03 |
| 72 | GO:0016123: xanthophyll biosynthetic process | 2.87E-03 |
| 73 | GO:0034220: ion transmembrane transport | 3.00E-03 |
| 74 | GO:0006520: cellular amino acid metabolic process | 3.23E-03 |
| 75 | GO:0010182: sugar mediated signaling pathway | 3.23E-03 |
| 76 | GO:0045962: positive regulation of development, heterochronic | 3.54E-03 |
| 77 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.54E-03 |
| 78 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 3.54E-03 |
| 79 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 4.26E-03 |
| 80 | GO:0045926: negative regulation of growth | 4.26E-03 |
| 81 | GO:1901259: chloroplast rRNA processing | 4.26E-03 |
| 82 | GO:0009903: chloroplast avoidance movement | 4.26E-03 |
| 83 | GO:0010189: vitamin E biosynthetic process | 4.26E-03 |
| 84 | GO:0032502: developmental process | 4.26E-03 |
| 85 | GO:0048437: floral organ development | 5.03E-03 |
| 86 | GO:1900057: positive regulation of leaf senescence | 5.03E-03 |
| 87 | GO:0050829: defense response to Gram-negative bacterium | 5.03E-03 |
| 88 | GO:0006400: tRNA modification | 5.03E-03 |
| 89 | GO:0010161: red light signaling pathway | 5.03E-03 |
| 90 | GO:0010027: thylakoid membrane organization | 5.76E-03 |
| 91 | GO:0007155: cell adhesion | 5.85E-03 |
| 92 | GO:0048564: photosystem I assembly | 5.85E-03 |
| 93 | GO:0010928: regulation of auxin mediated signaling pathway | 5.85E-03 |
| 94 | GO:0042255: ribosome assembly | 5.85E-03 |
| 95 | GO:0006353: DNA-templated transcription, termination | 5.85E-03 |
| 96 | GO:0009690: cytokinin metabolic process | 5.85E-03 |
| 97 | GO:0032508: DNA duplex unwinding | 5.85E-03 |
| 98 | GO:2000070: regulation of response to water deprivation | 5.85E-03 |
| 99 | GO:0006002: fructose 6-phosphate metabolic process | 6.71E-03 |
| 100 | GO:0071482: cellular response to light stimulus | 6.71E-03 |
| 101 | GO:0015996: chlorophyll catabolic process | 6.71E-03 |
| 102 | GO:0007186: G-protein coupled receptor signaling pathway | 6.71E-03 |
| 103 | GO:0009657: plastid organization | 6.71E-03 |
| 104 | GO:0009932: cell tip growth | 6.71E-03 |
| 105 | GO:0010411: xyloglucan metabolic process | 6.79E-03 |
| 106 | GO:0018298: protein-chromophore linkage | 7.52E-03 |
| 107 | GO:0051865: protein autoubiquitination | 7.60E-03 |
| 108 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 7.60E-03 |
| 109 | GO:0090333: regulation of stomatal closure | 7.60E-03 |
| 110 | GO:0006633: fatty acid biosynthetic process | 7.84E-03 |
| 111 | GO:0010205: photoinhibition | 8.55E-03 |
| 112 | GO:0009638: phototropism | 8.55E-03 |
| 113 | GO:1900426: positive regulation of defense response to bacterium | 8.55E-03 |
| 114 | GO:0009688: abscisic acid biosynthetic process | 9.53E-03 |
| 115 | GO:0043069: negative regulation of programmed cell death | 9.53E-03 |
| 116 | GO:0009641: shade avoidance | 9.53E-03 |
| 117 | GO:0009637: response to blue light | 9.55E-03 |
| 118 | GO:0009773: photosynthetic electron transport in photosystem I | 1.06E-02 |
| 119 | GO:0019684: photosynthesis, light reaction | 1.06E-02 |
| 120 | GO:0006352: DNA-templated transcription, initiation | 1.06E-02 |
| 121 | GO:0045037: protein import into chloroplast stroma | 1.16E-02 |
| 122 | GO:0010114: response to red light | 1.23E-02 |
| 123 | GO:0009785: blue light signaling pathway | 1.27E-02 |
| 124 | GO:0018107: peptidyl-threonine phosphorylation | 1.27E-02 |
| 125 | GO:0009725: response to hormone | 1.27E-02 |
| 126 | GO:0005986: sucrose biosynthetic process | 1.27E-02 |
| 127 | GO:0042546: cell wall biogenesis | 1.28E-02 |
| 128 | GO:0034605: cellular response to heat | 1.38E-02 |
| 129 | GO:0010020: chloroplast fission | 1.38E-02 |
| 130 | GO:0019253: reductive pentose-phosphate cycle | 1.38E-02 |
| 131 | GO:0010223: secondary shoot formation | 1.38E-02 |
| 132 | GO:0009266: response to temperature stimulus | 1.38E-02 |
| 133 | GO:0006810: transport | 1.44E-02 |
| 134 | GO:0007031: peroxisome organization | 1.50E-02 |
| 135 | GO:0042343: indole glucosinolate metabolic process | 1.50E-02 |
| 136 | GO:0010025: wax biosynthetic process | 1.62E-02 |
| 137 | GO:0006857: oligopeptide transport | 1.79E-02 |
| 138 | GO:0009735: response to cytokinin | 1.82E-02 |
| 139 | GO:0006096: glycolytic process | 1.97E-02 |
| 140 | GO:0043086: negative regulation of catalytic activity | 1.97E-02 |
| 141 | GO:0006306: DNA methylation | 2.00E-02 |
| 142 | GO:0003333: amino acid transmembrane transport | 2.00E-02 |
| 143 | GO:0048511: rhythmic process | 2.00E-02 |
| 144 | GO:0098542: defense response to other organism | 2.00E-02 |
| 145 | GO:0010017: red or far-red light signaling pathway | 2.14E-02 |
| 146 | GO:0016226: iron-sulfur cluster assembly | 2.14E-02 |
| 147 | GO:0030433: ubiquitin-dependent ERAD pathway | 2.14E-02 |
| 148 | GO:0080092: regulation of pollen tube growth | 2.14E-02 |
| 149 | GO:0019748: secondary metabolic process | 2.14E-02 |
| 150 | GO:0006817: phosphate ion transport | 2.41E-02 |
| 151 | GO:0009561: megagametogenesis | 2.41E-02 |
| 152 | GO:0009306: protein secretion | 2.41E-02 |
| 153 | GO:0009742: brassinosteroid mediated signaling pathway | 2.52E-02 |
| 154 | GO:0009741: response to brassinosteroid | 2.85E-02 |
| 155 | GO:0009646: response to absence of light | 3.00E-02 |
| 156 | GO:0009791: post-embryonic development | 3.15E-02 |
| 157 | GO:0019252: starch biosynthetic process | 3.15E-02 |
| 158 | GO:0008654: phospholipid biosynthetic process | 3.15E-02 |
| 159 | GO:0007264: small GTPase mediated signal transduction | 3.47E-02 |
| 160 | GO:0030163: protein catabolic process | 3.63E-02 |
| 161 | GO:0007623: circadian rhythm | 4.10E-02 |
| 162 | GO:0005975: carbohydrate metabolic process | 4.11E-02 |
| 163 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 4.47E-02 |
| 164 | GO:0042128: nitrate assimilation | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 8 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 9 | GO:0016491: oxidoreductase activity | 4.33E-06 |
| 10 | GO:0004332: fructose-bisphosphate aldolase activity | 1.56E-04 |
| 11 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.56E-04 |
| 12 | GO:0080132: fatty acid alpha-hydroxylase activity | 3.29E-04 |
| 13 | GO:0009496: plastoquinol--plastocyanin reductase activity | 3.29E-04 |
| 14 | GO:0010242: oxygen evolving activity | 3.29E-04 |
| 15 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 3.29E-04 |
| 16 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 3.29E-04 |
| 17 | GO:0004328: formamidase activity | 3.29E-04 |
| 18 | GO:0071949: FAD binding | 5.12E-04 |
| 19 | GO:0042802: identical protein binding | 5.41E-04 |
| 20 | GO:0015173: aromatic amino acid transmembrane transporter activity | 7.18E-04 |
| 21 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 7.18E-04 |
| 22 | GO:0018708: thiol S-methyltransferase activity | 7.18E-04 |
| 23 | GO:0005464: UDP-xylose transmembrane transporter activity | 7.18E-04 |
| 24 | GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity | 7.18E-04 |
| 25 | GO:0008728: GTP diphosphokinase activity | 7.18E-04 |
| 26 | GO:0047746: chlorophyllase activity | 7.18E-04 |
| 27 | GO:0042389: omega-3 fatty acid desaturase activity | 7.18E-04 |
| 28 | GO:0004565: beta-galactosidase activity | 1.05E-03 |
| 29 | GO:0031072: heat shock protein binding | 1.05E-03 |
| 30 | GO:0019843: rRNA binding | 1.10E-03 |
| 31 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.16E-03 |
| 32 | GO:0050734: hydroxycinnamoyltransferase activity | 1.16E-03 |
| 33 | GO:0016992: lipoate synthase activity | 1.16E-03 |
| 34 | GO:0005504: fatty acid binding | 1.16E-03 |
| 35 | GO:0032947: protein complex scaffold | 1.16E-03 |
| 36 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 1.16E-03 |
| 37 | GO:0030267: glyoxylate reductase (NADP) activity | 1.16E-03 |
| 38 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.16E-03 |
| 39 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 1.16E-03 |
| 40 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.16E-03 |
| 41 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.67E-03 |
| 42 | GO:0016851: magnesium chelatase activity | 1.67E-03 |
| 43 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.67E-03 |
| 44 | GO:0009882: blue light photoreceptor activity | 1.67E-03 |
| 45 | GO:0005506: iron ion binding | 2.09E-03 |
| 46 | GO:0016987: sigma factor activity | 2.24E-03 |
| 47 | GO:0045430: chalcone isomerase activity | 2.24E-03 |
| 48 | GO:0043495: protein anchor | 2.24E-03 |
| 49 | GO:0001053: plastid sigma factor activity | 2.24E-03 |
| 50 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.24E-03 |
| 51 | GO:0003727: single-stranded RNA binding | 2.56E-03 |
| 52 | GO:0005275: amine transmembrane transporter activity | 2.87E-03 |
| 53 | GO:0008080: N-acetyltransferase activity | 3.23E-03 |
| 54 | GO:0000293: ferric-chelate reductase activity | 3.54E-03 |
| 55 | GO:0035673: oligopeptide transmembrane transporter activity | 3.54E-03 |
| 56 | GO:0042578: phosphoric ester hydrolase activity | 3.54E-03 |
| 57 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.54E-03 |
| 58 | GO:0048038: quinone binding | 3.98E-03 |
| 59 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.98E-03 |
| 60 | GO:0102391: decanoate--CoA ligase activity | 4.26E-03 |
| 61 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.26E-03 |
| 62 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 4.26E-03 |
| 63 | GO:0051920: peroxiredoxin activity | 4.26E-03 |
| 64 | GO:0019899: enzyme binding | 5.03E-03 |
| 65 | GO:0004467: long-chain fatty acid-CoA ligase activity | 5.03E-03 |
| 66 | GO:0052689: carboxylic ester hydrolase activity | 5.65E-03 |
| 67 | GO:0015250: water channel activity | 5.76E-03 |
| 68 | GO:0016209: antioxidant activity | 5.85E-03 |
| 69 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 6.71E-03 |
| 70 | GO:0008135: translation factor activity, RNA binding | 6.71E-03 |
| 71 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 6.79E-03 |
| 72 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 7.18E-03 |
| 73 | GO:0046910: pectinesterase inhibitor activity | 8.08E-03 |
| 74 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.06E-02 |
| 75 | GO:0015198: oligopeptide transporter activity | 1.16E-02 |
| 76 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.27E-02 |
| 77 | GO:0000155: phosphorelay sensor kinase activity | 1.27E-02 |
| 78 | GO:0035091: phosphatidylinositol binding | 1.34E-02 |
| 79 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.34E-02 |
| 80 | GO:0031624: ubiquitin conjugating enzyme binding | 1.38E-02 |
| 81 | GO:0008266: poly(U) RNA binding | 1.38E-02 |
| 82 | GO:0003729: mRNA binding | 1.47E-02 |
| 83 | GO:0016788: hydrolase activity, acting on ester bonds | 1.58E-02 |
| 84 | GO:0003690: double-stranded DNA binding | 1.73E-02 |
| 85 | GO:0051536: iron-sulfur cluster binding | 1.75E-02 |
| 86 | GO:0022891: substrate-specific transmembrane transporter activity | 2.27E-02 |
| 87 | GO:0051082: unfolded protein binding | 2.38E-02 |
| 88 | GO:0004871: signal transducer activity | 2.69E-02 |
| 89 | GO:0016787: hydrolase activity | 2.93E-02 |
| 90 | GO:0010181: FMN binding | 3.00E-02 |
| 91 | GO:0004872: receptor activity | 3.15E-02 |
| 92 | GO:0003924: GTPase activity | 3.30E-02 |
| 93 | GO:0004518: nuclease activity | 3.47E-02 |
| 94 | GO:0019825: oxygen binding | 3.50E-02 |
| 95 | GO:0016791: phosphatase activity | 3.79E-02 |
| 96 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.96E-02 |
| 97 | GO:0008017: microtubule binding | 4.29E-02 |
| 98 | GO:0005525: GTP binding | 4.31E-02 |
| 99 | GO:0020037: heme binding | 4.38E-02 |
| 100 | GO:0016168: chlorophyll binding | 4.47E-02 |