Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G25070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046865: terpenoid transport0.00E+00
2GO:0010793: regulation of mRNA export from nucleus0.00E+00
3GO:0034756: regulation of iron ion transport0.00E+00
4GO:0006654: phosphatidic acid biosynthetic process0.00E+00
5GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
6GO:0002084: protein depalmitoylation0.00E+00
7GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
8GO:0051707: response to other organism4.83E-06
9GO:0009814: defense response, incompatible interaction2.12E-05
10GO:0071446: cellular response to salicylic acid stimulus3.99E-04
11GO:1900056: negative regulation of leaf senescence3.99E-04
12GO:0010230: alternative respiration4.21E-04
13GO:0019673: GDP-mannose metabolic process4.21E-04
14GO:0042868: antisense RNA metabolic process4.21E-04
15GO:0031123: RNA 3'-end processing4.21E-04
16GO:0015760: glucose-6-phosphate transport4.21E-04
17GO:0071076: RNA 3' uridylation4.21E-04
18GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.21E-04
19GO:0009700: indole phytoalexin biosynthetic process4.21E-04
20GO:0002143: tRNA wobble position uridine thiolation4.21E-04
21GO:0098789: pre-mRNA cleavage required for polyadenylation4.21E-04
22GO:1900150: regulation of defense response to fungus4.99E-04
23GO:0010120: camalexin biosynthetic process6.09E-04
24GO:0006623: protein targeting to vacuole6.75E-04
25GO:0015712: hexose phosphate transport9.10E-04
26GO:0051252: regulation of RNA metabolic process9.10E-04
27GO:0006996: organelle organization9.10E-04
28GO:0009156: ribonucleoside monophosphate biosynthetic process9.10E-04
29GO:0035335: peptidyl-tyrosine dephosphorylation9.10E-04
30GO:0015709: thiosulfate transport9.10E-04
31GO:0031204: posttranslational protein targeting to membrane, translocation9.10E-04
32GO:0071422: succinate transmembrane transport9.10E-04
33GO:0046939: nucleotide phosphorylation9.10E-04
34GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.10E-04
35GO:1902066: regulation of cell wall pectin metabolic process9.10E-04
36GO:0050684: regulation of mRNA processing9.10E-04
37GO:0042853: L-alanine catabolic process9.10E-04
38GO:0051607: defense response to virus1.09E-03
39GO:0009816: defense response to bacterium, incompatible interaction1.25E-03
40GO:0009627: systemic acquired resistance1.34E-03
41GO:0061158: 3'-UTR-mediated mRNA destabilization1.48E-03
42GO:0017006: protein-tetrapyrrole linkage1.48E-03
43GO:1901672: positive regulation of systemic acquired resistance1.48E-03
44GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.48E-03
45GO:0035436: triose phosphate transmembrane transport1.48E-03
46GO:0045836: positive regulation of meiotic nuclear division1.48E-03
47GO:0015783: GDP-fucose transport1.48E-03
48GO:0006517: protein deglycosylation1.48E-03
49GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.48E-03
50GO:0015692: lead ion transport1.48E-03
51GO:0060968: regulation of gene silencing1.48E-03
52GO:0015714: phosphoenolpyruvate transport1.48E-03
53GO:0080168: abscisic acid transport1.48E-03
54GO:0048586: regulation of long-day photoperiodism, flowering1.48E-03
55GO:0032922: circadian regulation of gene expression1.48E-03
56GO:0032784: regulation of DNA-templated transcription, elongation1.48E-03
57GO:0009225: nucleotide-sugar metabolic process1.89E-03
58GO:0002679: respiratory burst involved in defense response2.14E-03
59GO:1902290: positive regulation of defense response to oomycetes2.14E-03
60GO:0006515: misfolded or incompletely synthesized protein catabolic process2.14E-03
61GO:0032877: positive regulation of DNA endoreduplication2.14E-03
62GO:0055089: fatty acid homeostasis2.14E-03
63GO:0000187: activation of MAPK activity2.14E-03
64GO:0060964: regulation of gene silencing by miRNA2.14E-03
65GO:0015729: oxaloacetate transport2.14E-03
66GO:0009584: detection of visible light2.14E-03
67GO:0010104: regulation of ethylene-activated signaling pathway2.14E-03
68GO:0010731: protein glutathionylation2.14E-03
69GO:0006516: glycoprotein catabolic process2.14E-03
70GO:0015713: phosphoglycerate transport2.88E-03
71GO:0010188: response to microbial phytotoxin2.88E-03
72GO:0009165: nucleotide biosynthetic process2.88E-03
73GO:0010109: regulation of photosynthesis2.88E-03
74GO:0033320: UDP-D-xylose biosynthetic process2.88E-03
75GO:0010363: regulation of plant-type hypersensitive response2.88E-03
76GO:0030433: ubiquitin-dependent ERAD pathway3.10E-03
77GO:0009636: response to toxic substance3.55E-03
78GO:0098719: sodium ion import across plasma membrane3.68E-03
79GO:0009435: NAD biosynthetic process3.68E-03
80GO:0045927: positive regulation of growth3.68E-03
81GO:0071423: malate transmembrane transport3.68E-03
82GO:0035435: phosphate ion transmembrane transport4.56E-03
83GO:0009643: photosynthetic acclimation4.56E-03
84GO:0006561: proline biosynthetic process4.56E-03
85GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.56E-03
86GO:0042732: D-xylose metabolic process4.56E-03
87GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity4.56E-03
88GO:0042176: regulation of protein catabolic process4.56E-03
89GO:0060918: auxin transport4.56E-03
90GO:0006139: nucleobase-containing compound metabolic process4.56E-03
91GO:0042742: defense response to bacterium4.86E-03
92GO:0048544: recognition of pollen5.00E-03
93GO:0010193: response to ozone5.75E-03
94GO:0007050: cell cycle arrest6.49E-03
95GO:0080186: developmental vegetative growth6.49E-03
96GO:2000014: regulation of endosperm development6.49E-03
97GO:0008272: sulfate transport6.49E-03
98GO:0006904: vesicle docking involved in exocytosis7.41E-03
99GO:0050821: protein stabilization7.55E-03
100GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.55E-03
101GO:0009819: drought recovery7.55E-03
102GO:0030968: endoplasmic reticulum unfolded protein response8.67E-03
103GO:2000031: regulation of salicylic acid mediated signaling pathway8.67E-03
104GO:0006002: fructose 6-phosphate metabolic process8.67E-03
105GO:0001558: regulation of cell growth8.67E-03
106GO:0010112: regulation of systemic acquired resistance9.85E-03
107GO:0048589: developmental growth9.85E-03
108GO:0015780: nucleotide-sugar transport9.85E-03
109GO:0008219: cell death1.09E-02
110GO:0009817: defense response to fungus, incompatible interaction1.09E-02
111GO:0008202: steroid metabolic process1.11E-02
112GO:0051453: regulation of intracellular pH1.11E-02
113GO:1900426: positive regulation of defense response to bacterium1.11E-02
114GO:0090332: stomatal closure1.11E-02
115GO:0010267: production of ta-siRNAs involved in RNA interference1.11E-02
116GO:0048268: clathrin coat assembly1.11E-02
117GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.11E-02
118GO:0009407: toxin catabolic process1.20E-02
119GO:0043069: negative regulation of programmed cell death1.24E-02
120GO:0009631: cold acclimation1.26E-02
121GO:0000724: double-strand break repair via homologous recombination1.32E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate1.37E-02
123GO:0010150: leaf senescence1.41E-02
124GO:0009751: response to salicylic acid1.50E-02
125GO:0016925: protein sumoylation1.51E-02
126GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.51E-02
127GO:0008361: regulation of cell size1.51E-02
128GO:0006790: sulfur compound metabolic process1.51E-02
129GO:0006626: protein targeting to mitochondrion1.65E-02
130GO:2000028: regulation of photoperiodism, flowering1.65E-02
131GO:0050826: response to freezing1.65E-02
132GO:0006887: exocytosis1.65E-02
133GO:0009718: anthocyanin-containing compound biosynthetic process1.65E-02
134GO:0006631: fatty acid metabolic process1.65E-02
135GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.65E-02
136GO:0010102: lateral root morphogenesis1.65E-02
137GO:0009617: response to bacterium1.77E-02
138GO:0002237: response to molecule of bacterial origin1.80E-02
139GO:0007034: vacuolar transport1.80E-02
140GO:0000209: protein polyubiquitination1.86E-02
141GO:0006952: defense response1.88E-02
142GO:0010039: response to iron ion1.95E-02
143GO:0071732: cellular response to nitric oxide1.95E-02
144GO:0070588: calcium ion transmembrane transport1.95E-02
145GO:0046854: phosphatidylinositol phosphorylation1.95E-02
146GO:0010053: root epidermal cell differentiation1.95E-02
147GO:0042343: indole glucosinolate metabolic process1.95E-02
148GO:0007030: Golgi organization1.95E-02
149GO:0006855: drug transmembrane transport2.09E-02
150GO:0006636: unsaturated fatty acid biosynthetic process2.11E-02
151GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.17E-02
152GO:0000165: MAPK cascade2.17E-02
153GO:0006289: nucleotide-excision repair2.27E-02
154GO:0005992: trehalose biosynthetic process2.27E-02
155GO:0006487: protein N-linked glycosylation2.27E-02
156GO:0009116: nucleoside metabolic process2.27E-02
157GO:0009809: lignin biosynthetic process2.41E-02
158GO:0098542: defense response to other organism2.60E-02
159GO:0006334: nucleosome assembly2.60E-02
160GO:0048278: vesicle docking2.60E-02
161GO:0031408: oxylipin biosynthetic process2.60E-02
162GO:0051321: meiotic cell cycle2.60E-02
163GO:0071456: cellular response to hypoxia2.78E-02
164GO:0010017: red or far-red light signaling pathway2.78E-02
165GO:2000022: regulation of jasmonic acid mediated signaling pathway2.78E-02
166GO:0071369: cellular response to ethylene stimulus2.96E-02
167GO:0009625: response to insect2.96E-02
168GO:0006012: galactose metabolic process2.96E-02
169GO:0009626: plant-type hypersensitive response3.04E-02
170GO:0009306: protein secretion3.14E-02
171GO:0016310: phosphorylation3.22E-02
172GO:0042147: retrograde transport, endosome to Golgi3.32E-02
173GO:0008033: tRNA processing3.51E-02
174GO:0010051: xylem and phloem pattern formation3.51E-02
175GO:0009960: endosperm development3.70E-02
176GO:0009958: positive gravitropism3.70E-02
177GO:0061025: membrane fusion3.90E-02
178GO:0006814: sodium ion transport3.90E-02
179GO:0009749: response to glucose4.10E-02
180GO:0006891: intra-Golgi vesicle-mediated transport4.30E-02
181GO:0002229: defense response to oomycetes4.30E-02
182GO:0000302: response to reactive oxygen species4.30E-02
183GO:0031047: gene silencing by RNA4.51E-02
184GO:0016032: viral process4.51E-02
185GO:1901657: glycosyl compound metabolic process4.72E-02
186GO:0030163: protein catabolic process4.72E-02
187GO:0071281: cellular response to iron ion4.72E-02
RankGO TermAdjusted P value
1GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
2GO:0034338: short-chain carboxylesterase activity0.00E+00
3GO:0019205: nucleobase-containing compound kinase activity0.00E+00
4GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
5GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
6GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
7GO:0008734: L-aspartate oxidase activity0.00E+00
8GO:0051670: inulinase activity0.00E+00
9GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
10GO:0008092: cytoskeletal protein binding0.00E+00
11GO:0050513: glycoprotein 2-beta-D-xylosyltransferase activity0.00E+00
12GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
13GO:0016621: cinnamoyl-CoA reductase activity3.99E-04
14GO:0031219: levanase activity4.21E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.21E-04
16GO:0050265: RNA uridylyltransferase activity4.21E-04
17GO:0051669: fructan beta-fructosidase activity4.21E-04
18GO:1990381: ubiquitin-specific protease binding4.21E-04
19GO:0008446: GDP-mannose 4,6-dehydratase activity4.21E-04
20GO:0004708: MAP kinase kinase activity4.99E-04
21GO:0004338: glucan exo-1,3-beta-glucosidase activity9.10E-04
22GO:0015117: thiosulfate transmembrane transporter activity9.10E-04
23GO:1901677: phosphate transmembrane transporter activity9.10E-04
24GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity9.10E-04
25GO:0004566: beta-glucuronidase activity9.10E-04
26GO:0009883: red or far-red light photoreceptor activity9.10E-04
27GO:0004809: tRNA (guanine-N2-)-methyltransferase activity9.10E-04
28GO:0051879: Hsp90 protein binding9.10E-04
29GO:0015152: glucose-6-phosphate transmembrane transporter activity9.10E-04
30GO:0008805: carbon-monoxide oxygenase activity9.10E-04
31GO:0008428: ribonuclease inhibitor activity9.10E-04
32GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.01E-03
33GO:0008020: G-protein coupled photoreceptor activity1.48E-03
34GO:0071917: triose-phosphate transmembrane transporter activity1.48E-03
35GO:0005457: GDP-fucose transmembrane transporter activity1.48E-03
36GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.48E-03
37GO:0005310: dicarboxylic acid transmembrane transporter activity1.48E-03
38GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.48E-03
39GO:0015141: succinate transmembrane transporter activity1.48E-03
40GO:0004867: serine-type endopeptidase inhibitor activity1.89E-03
41GO:0016301: kinase activity1.95E-03
42GO:0030246: carbohydrate binding1.99E-03
43GO:0017077: oxidative phosphorylation uncoupler activity2.14E-03
44GO:0004749: ribose phosphate diphosphokinase activity2.14E-03
45GO:0019201: nucleotide kinase activity2.14E-03
46GO:0015131: oxaloacetate transmembrane transporter activity2.14E-03
47GO:0035529: NADH pyrophosphatase activity2.14E-03
48GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.14E-03
49GO:0004792: thiosulfate sulfurtransferase activity2.14E-03
50GO:0009916: alternative oxidase activity2.88E-03
51GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.88E-03
52GO:0015120: phosphoglycerate transmembrane transporter activity2.88E-03
53GO:0015297: antiporter activity2.93E-03
54GO:0004040: amidase activity3.68E-03
55GO:0031386: protein tag3.68E-03
56GO:0047631: ADP-ribose diphosphatase activity3.68E-03
57GO:0008641: small protein activating enzyme activity3.68E-03
58GO:0008948: oxaloacetate decarboxylase activity3.68E-03
59GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.68E-03
60GO:0004623: phospholipase A2 activity3.68E-03
61GO:0042285: xylosyltransferase activity3.68E-03
62GO:0035252: UDP-xylosyltransferase activity4.56E-03
63GO:0048040: UDP-glucuronate decarboxylase activity4.56E-03
64GO:0008474: palmitoyl-(protein) hydrolase activity4.56E-03
65GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity4.56E-03
66GO:0000210: NAD+ diphosphatase activity4.56E-03
67GO:0004656: procollagen-proline 4-dioxygenase activity5.49E-03
68GO:0070403: NAD+ binding5.49E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.49E-03
70GO:0004017: adenylate kinase activity5.49E-03
71GO:0004620: phospholipase activity6.49E-03
72GO:0102425: myricetin 3-O-glucosyltransferase activity6.49E-03
73GO:0102360: daphnetin 3-O-glucosyltransferase activity6.49E-03
74GO:0009881: photoreceptor activity6.49E-03
75GO:0003872: 6-phosphofructokinase activity6.49E-03
76GO:0015140: malate transmembrane transporter activity6.49E-03
77GO:0004525: ribonuclease III activity7.55E-03
78GO:0004034: aldose 1-epimerase activity7.55E-03
79GO:0047893: flavonol 3-O-glucosyltransferase activity7.55E-03
80GO:0008142: oxysterol binding8.67E-03
81GO:0030247: polysaccharide binding9.82E-03
82GO:0031490: chromatin DNA binding1.11E-02
83GO:0046872: metal ion binding1.23E-02
84GO:0030234: enzyme regulator activity1.24E-02
85GO:0004568: chitinase activity1.24E-02
86GO:0005545: 1-phosphatidylinositol binding1.24E-02
87GO:0008559: xenobiotic-transporting ATPase activity1.37E-02
88GO:0047372: acylglycerol lipase activity1.37E-02
89GO:0015386: potassium:proton antiporter activity1.37E-02
90GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.38E-02
91GO:0015116: sulfate transmembrane transporter activity1.51E-02
92GO:0000049: tRNA binding1.51E-02
93GO:0005315: inorganic phosphate transmembrane transporter activity1.65E-02
94GO:0000155: phosphorelay sensor kinase activity1.65E-02
95GO:0005388: calcium-transporting ATPase activity1.65E-02
96GO:0004565: beta-galactosidase activity1.65E-02
97GO:0004364: glutathione transferase activity1.72E-02
98GO:0005524: ATP binding1.78E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.80E-02
100GO:0031624: ubiquitin conjugating enzyme binding1.80E-02
101GO:0003712: transcription cofactor activity1.95E-02
102GO:0004725: protein tyrosine phosphatase activity2.11E-02
103GO:0031418: L-ascorbic acid binding2.27E-02
104GO:0008408: 3'-5' exonuclease activity2.60E-02
105GO:0035251: UDP-glucosyltransferase activity2.60E-02
106GO:0031625: ubiquitin protein ligase binding2.67E-02
107GO:0043531: ADP binding2.76E-02
108GO:0016779: nucleotidyltransferase activity2.78E-02
109GO:0008810: cellulase activity2.96E-02
110GO:0003727: single-stranded RNA binding3.14E-02
111GO:0004527: exonuclease activity3.70E-02
112GO:0030276: clathrin binding3.70E-02
113GO:0016853: isomerase activity3.90E-02
114GO:0010181: FMN binding3.90E-02
115GO:0015385: sodium:proton antiporter activity4.72E-02
116GO:0030170: pyridoxal phosphate binding4.76E-02
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Gene type



Gene DE type