co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090615: mitochondrial mRNA processing	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
4	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
7	GO:1901698: response to nitrogen compound	0.00E+00
8	GO:0090627: plant epidermal cell differentiation	0.00E+00
9	GO:0009606: tropism	0.00E+00
10	GO:0035884: arabinan biosynthetic process	0.00E+00
11	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
12	GO:0097164: ammonium ion metabolic process	0.00E+00
13	GO:0080127: fruit septum development	0.00E+00
14	GO:0045184: establishment of protein localization	0.00E+00
15	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
16	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
17	GO:0046620: regulation of organ growth	7.47E-09
18	GO:0042793: transcription from plastid promoter	9.10E-08
19	GO:0009734: auxin-activated signaling pathway	5.48E-07
20	GO:0009416: response to light stimulus	1.82E-06
21	GO:0009733: response to auxin	3.91E-06
22	GO:0010569: regulation of double-strand break repair via homologous recombination	1.37E-05
23	GO:0009926: auxin polar transport	1.65E-05
24	GO:0009658: chloroplast organization	3.17E-05
25	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.02E-05
26	GO:2000038: regulation of stomatal complex development	1.67E-04
27	GO:0009913: epidermal cell differentiation	3.57E-04
28	GO:0015904: tetracycline transport	5.60E-04
29	GO:0034757: negative regulation of iron ion transport	5.60E-04
30	GO:0042659: regulation of cell fate specification	5.60E-04
31	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.60E-04
32	GO:1905039: carboxylic acid transmembrane transport	5.60E-04
33	GO:1905200: gibberellic acid transmembrane transport	5.60E-04
34	GO:0080112: seed growth	5.60E-04
35	GO:0090558: plant epidermis development	5.60E-04
36	GO:0010063: positive regulation of trichoblast fate specification	5.60E-04
37	GO:1903866: palisade mesophyll development	5.60E-04
38	GO:0010480: microsporocyte differentiation	5.60E-04
39	GO:0033206: meiotic cytokinesis	5.60E-04
40	GO:0035987: endodermal cell differentiation	5.60E-04
41	GO:0043609: regulation of carbon utilization	5.60E-04
42	GO:0006436: tryptophanyl-tRNA aminoacylation	5.60E-04
43	GO:0048437: floral organ development	6.09E-04
44	GO:0042255: ribosome assembly	7.58E-04
45	GO:0007389: pattern specification process	9.22E-04
46	GO:0009875: pollen-pistil interaction	1.20E-03
47	GO:2000123: positive regulation of stomatal complex development	1.20E-03
48	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.20E-03
49	GO:0070981: L-asparagine biosynthetic process	1.20E-03
50	GO:0010271: regulation of chlorophyll catabolic process	1.20E-03
51	GO:0018026: peptidyl-lysine monomethylation	1.20E-03
52	GO:0071497: cellular response to freezing	1.20E-03
53	GO:0009662: etioplast organization	1.20E-03
54	GO:1900033: negative regulation of trichome patterning	1.20E-03
55	GO:1904143: positive regulation of carotenoid biosynthetic process	1.20E-03
56	GO:0080009: mRNA methylation	1.20E-03
57	GO:0006529: asparagine biosynthetic process	1.20E-03
58	GO:0080156: mitochondrial mRNA modification	1.26E-03
59	GO:1900865: chloroplast RNA modification	1.30E-03
60	GO:0032502: developmental process	1.37E-03
61	GO:0009451: RNA modification	1.51E-03
62	GO:0010252: auxin homeostasis	1.61E-03
63	GO:0090708: specification of plant organ axis polarity	1.98E-03
64	GO:0080117: secondary growth	1.98E-03
65	GO:0006000: fructose metabolic process	1.98E-03
66	GO:0090391: granum assembly	1.98E-03
67	GO:0071705: nitrogen compound transport	1.98E-03
68	GO:0001578: microtubule bundle formation	1.98E-03
69	GO:0010588: cotyledon vascular tissue pattern formation	2.29E-03
70	GO:0010020: chloroplast fission	2.58E-03
71	GO:0048481: plant ovule development	2.84E-03
72	GO:1902476: chloride transmembrane transport	2.87E-03
73	GO:0010071: root meristem specification	2.87E-03
74	GO:0051513: regulation of monopolar cell growth	2.87E-03
75	GO:0010239: chloroplast mRNA processing	2.87E-03
76	GO:0044211: CTP salvage	2.87E-03
77	GO:0009800: cinnamic acid biosynthetic process	2.87E-03
78	GO:0010306: rhamnogalacturonan II biosynthetic process	2.87E-03
79	GO:0046739: transport of virus in multicellular host	2.87E-03
80	GO:2000904: regulation of starch metabolic process	2.87E-03
81	GO:0051289: protein homotetramerization	2.87E-03
82	GO:0043572: plastid fission	2.87E-03
83	GO:0080188: RNA-directed DNA methylation	2.90E-03
84	GO:0006479: protein methylation	3.87E-03
85	GO:0048629: trichome patterning	3.87E-03
86	GO:0051322: anaphase	3.87E-03
87	GO:0071249: cellular response to nitrate	3.87E-03
88	GO:0030104: water homeostasis	3.87E-03
89	GO:0006221: pyrimidine nucleotide biosynthetic process	3.87E-03
90	GO:0044206: UMP salvage	3.87E-03
91	GO:0006346: methylation-dependent chromatin silencing	3.87E-03
92	GO:1901141: regulation of lignin biosynthetic process	3.87E-03
93	GO:0016998: cell wall macromolecule catabolic process	4.36E-03
94	GO:1902183: regulation of shoot apical meristem development	4.97E-03
95	GO:0016123: xanthophyll biosynthetic process	4.97E-03
96	GO:0032876: negative regulation of DNA endoreduplication	4.97E-03
97	GO:0030308: negative regulation of cell growth	4.97E-03
98	GO:0010375: stomatal complex patterning	4.97E-03
99	GO:0080110: sporopollenin biosynthetic process	4.97E-03
100	GO:0048497: maintenance of floral organ identity	4.97E-03
101	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.22E-03
102	GO:0010082: regulation of root meristem growth	5.22E-03
103	GO:0040008: regulation of growth	5.69E-03
104	GO:0006655: phosphatidylglycerol biosynthetic process	6.16E-03
105	GO:0016554: cytidine to uridine editing	6.16E-03
106	GO:1902456: regulation of stomatal opening	6.16E-03
107	GO:0042176: regulation of protein catabolic process	6.16E-03
108	GO:0048831: regulation of shoot system development	6.16E-03
109	GO:0010315: auxin efflux	6.16E-03
110	GO:0003006: developmental process involved in reproduction	6.16E-03
111	GO:0006559: L-phenylalanine catabolic process	6.16E-03
112	GO:0006206: pyrimidine nucleobase metabolic process	6.16E-03
113	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.16E-03
114	GO:0010405: arabinogalactan protein metabolic process	6.16E-03
115	GO:0010087: phloem or xylem histogenesis	6.66E-03
116	GO:0010305: leaf vascular tissue pattern formation	7.19E-03
117	GO:2000037: regulation of stomatal complex patterning	7.44E-03
118	GO:2000067: regulation of root morphogenesis	7.44E-03
119	GO:0071470: cellular response to osmotic stress	7.44E-03
120	GO:0009942: longitudinal axis specification	7.44E-03
121	GO:0048509: regulation of meristem development	7.44E-03
122	GO:2000033: regulation of seed dormancy process	7.44E-03
123	GO:1901259: chloroplast rRNA processing	7.44E-03
124	GO:0030488: tRNA methylation	7.44E-03
125	GO:0009646: response to absence of light	7.73E-03
126	GO:0008380: RNA splicing	8.00E-03
127	GO:0048825: cotyledon development	8.30E-03
128	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	8.81E-03
129	GO:0006955: immune response	8.81E-03
130	GO:0007050: cell cycle arrest	8.81E-03
131	GO:0006821: chloride transport	8.81E-03
132	GO:0015937: coenzyme A biosynthetic process	8.81E-03
133	GO:0010103: stomatal complex morphogenesis	8.81E-03
134	GO:0010583: response to cyclopentenone	9.51E-03
135	GO:0006468: protein phosphorylation	9.71E-03
136	GO:0052543: callose deposition in cell wall	1.03E-02
137	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.03E-02
138	GO:0001522: pseudouridine synthesis	1.03E-02
139	GO:0006353: DNA-templated transcription, termination	1.03E-02
140	GO:0048766: root hair initiation	1.03E-02
141	GO:0055075: potassium ion homeostasis	1.03E-02
142	GO:0000105: histidine biosynthetic process	1.03E-02
143	GO:0009828: plant-type cell wall loosening	1.08E-02
144	GO:0006002: fructose 6-phosphate metabolic process	1.18E-02
145	GO:0007186: G-protein coupled receptor signaling pathway	1.18E-02
146	GO:0010497: plasmodesmata-mediated intercellular transport	1.18E-02
147	GO:0009657: plastid organization	1.18E-02
148	GO:0071555: cell wall organization	1.24E-02
149	GO:0016567: protein ubiquitination	1.24E-02
150	GO:0010027: thylakoid membrane organization	1.29E-02
151	GO:2000024: regulation of leaf development	1.34E-02
152	GO:0048507: meristem development	1.34E-02
153	GO:0000373: Group II intron splicing	1.34E-02
154	GO:0048589: developmental growth	1.34E-02
155	GO:0000902: cell morphogenesis	1.34E-02
156	GO:0010029: regulation of seed germination	1.37E-02
157	GO:0009638: phototropism	1.51E-02
158	GO:0042761: very long-chain fatty acid biosynthetic process	1.51E-02
159	GO:2000280: regulation of root development	1.51E-02
160	GO:0006349: regulation of gene expression by genetic imprinting	1.51E-02
161	GO:0031425: chloroplast RNA processing	1.51E-02
162	GO:0010411: xyloglucan metabolic process	1.53E-02
163	GO:0006949: syncytium formation	1.69E-02
164	GO:0031627: telomeric loop formation	1.69E-02
165	GO:0010048: vernalization response	1.69E-02
166	GO:0048829: root cap development	1.69E-02
167	GO:0009058: biosynthetic process	1.75E-02
168	GO:0000160: phosphorelay signal transduction system	1.78E-02
169	GO:0010015: root morphogenesis	1.87E-02
170	GO:0015770: sucrose transport	1.87E-02
171	GO:0048229: gametophyte development	1.87E-02
172	GO:0008361: regulation of cell size	2.06E-02
173	GO:0015706: nitrate transport	2.06E-02
174	GO:0010152: pollen maturation	2.06E-02
175	GO:0016024: CDP-diacylglycerol biosynthetic process	2.06E-02
176	GO:0010582: floral meristem determinacy	2.06E-02
177	GO:0007275: multicellular organism development	2.21E-02
178	GO:0010075: regulation of meristem growth	2.25E-02
179	GO:0009767: photosynthetic electron transport chain	2.25E-02
180	GO:0030048: actin filament-based movement	2.25E-02
181	GO:0010102: lateral root morphogenesis	2.25E-02
182	GO:0009785: blue light signaling pathway	2.25E-02
183	GO:0009691: cytokinin biosynthetic process	2.25E-02
184	GO:0030001: metal ion transport	2.45E-02
185	GO:0009934: regulation of meristem structural organization	2.46E-02
186	GO:0048467: gynoecium development	2.46E-02
187	GO:0010143: cutin biosynthetic process	2.46E-02
188	GO:0010207: photosystem II assembly	2.46E-02
189	GO:0006541: glutamine metabolic process	2.46E-02
190	GO:0010167: response to nitrate	2.67E-02
191	GO:0009901: anther dehiscence	2.67E-02
192	GO:0010114: response to red light	2.77E-02
193	GO:0009739: response to gibberellin	2.82E-02
194	GO:0006071: glycerol metabolic process	2.88E-02
195	GO:0006833: water transport	2.88E-02
196	GO:0042546: cell wall biogenesis	2.89E-02
197	GO:0005975: carbohydrate metabolic process	2.96E-02
198	GO:0009944: polarity specification of adaxial/abaxial axis	3.10E-02
199	GO:0080147: root hair cell development	3.10E-02
200	GO:0009863: salicylic acid mediated signaling pathway	3.10E-02
201	GO:0010187: negative regulation of seed germination	3.10E-02
202	GO:2000377: regulation of reactive oxygen species metabolic process	3.10E-02
203	GO:0010073: meristem maintenance	3.33E-02
204	GO:0006825: copper ion transport	3.33E-02
205	GO:0051302: regulation of cell division	3.33E-02
206	GO:0006418: tRNA aminoacylation for protein translation	3.33E-02
207	GO:0006874: cellular calcium ion homeostasis	3.33E-02
208	GO:0042538: hyperosmotic salinity response	3.48E-02
209	GO:0009664: plant-type cell wall organization	3.48E-02
210	GO:0006306: DNA methylation	3.56E-02
211	GO:0003333: amino acid transmembrane transport	3.56E-02
212	GO:0009736: cytokinin-activated signaling pathway	3.73E-02
213	GO:0019748: secondary metabolic process	3.80E-02
214	GO:0031348: negative regulation of defense response	3.80E-02
215	GO:0071215: cellular response to abscisic acid stimulus	4.04E-02
216	GO:0009686: gibberellin biosynthetic process	4.04E-02
217	GO:0010584: pollen exine formation	4.29E-02
218	GO:0048443: stamen development	4.29E-02
219	GO:0006284: base-excision repair	4.29E-02
220	GO:0042127: regulation of cell proliferation	4.29E-02
221	GO:0070417: cellular response to cold	4.54E-02
222	GO:0048367: shoot system development	4.55E-02
223	GO:0048316: seed development	4.55E-02
224	GO:0010118: stomatal movement	4.79E-02
225	GO:0048653: anther development	4.79E-02
226	GO:0042631: cellular response to water deprivation	4.79E-02
227	GO:0000226: microtubule cytoskeleton organization	4.79E-02
228	GO:0080022: primary root development	4.79E-02
229	GO:0008033: tRNA processing	4.79E-02
230	GO:0009740: gibberellic acid mediated signaling pathway	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0070009: serine-type aminopeptidase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0003727: single-stranded RNA binding	6.92E-05
6	GO:0001872: (1->3)-beta-D-glucan binding	9.71E-05
7	GO:0004519: endonuclease activity	2.50E-04
8	GO:0004016: adenylate cyclase activity	5.60E-04
9	GO:0004400: histidinol-phosphate transaminase activity	5.60E-04
10	GO:1905201: gibberellin transmembrane transporter activity	5.60E-04
11	GO:0004632: phosphopantothenate--cysteine ligase activity	5.60E-04
12	GO:0042834: peptidoglycan binding	5.60E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.60E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.60E-04
15	GO:0016274: protein-arginine N-methyltransferase activity	5.60E-04
16	GO:0003867: 4-aminobutyrate transaminase activity	5.60E-04
17	GO:0004071: aspartate-ammonia ligase activity	5.60E-04
18	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	5.60E-04
19	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.60E-04
20	GO:0052381: tRNA dimethylallyltransferase activity	5.60E-04
21	GO:0004830: tryptophan-tRNA ligase activity	5.60E-04
22	GO:0004674: protein serine/threonine kinase activity	9.65E-04
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.20E-03
24	GO:0008805: carbon-monoxide oxygenase activity	1.20E-03
25	GO:0008493: tetracycline transporter activity	1.20E-03
26	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.20E-03
27	GO:0009884: cytokinin receptor activity	1.20E-03
28	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.20E-03
29	GO:0009672: auxin:proton symporter activity	1.30E-03
30	GO:0004871: signal transducer activity	1.94E-03
31	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.98E-03
32	GO:0052722: fatty acid in-chain hydroxylase activity	1.98E-03
33	GO:0017150: tRNA dihydrouridine synthase activity	1.98E-03
34	GO:0045548: phenylalanine ammonia-lyase activity	1.98E-03
35	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.98E-03
36	GO:0016805: dipeptidase activity	1.98E-03
37	GO:0005034: osmosensor activity	1.98E-03
38	GO:0009982: pseudouridine synthase activity	2.29E-03
39	GO:0010329: auxin efflux transmembrane transporter activity	2.29E-03
40	GO:0004650: polygalacturonase activity	2.30E-03
41	GO:0003723: RNA binding	2.40E-03
42	GO:0008508: bile acid:sodium symporter activity	2.87E-03
43	GO:0009041: uridylate kinase activity	2.87E-03
44	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.84E-03
45	GO:0004845: uracil phosphoribosyltransferase activity	3.87E-03
46	GO:0010011: auxin binding	3.87E-03
47	GO:0005253: anion channel activity	3.87E-03
48	GO:0004930: G-protein coupled receptor activity	3.87E-03
49	GO:0046556: alpha-L-arabinofuranosidase activity	3.87E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	3.87E-03
51	GO:0016829: lyase activity	4.21E-03
52	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.55E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	4.97E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.97E-03
55	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.97E-03
56	GO:0030570: pectate lyase activity	5.22E-03
57	GO:0005215: transporter activity	5.88E-03
58	GO:0043621: protein self-association	5.89E-03
59	GO:0005247: voltage-gated chloride channel activity	6.16E-03
60	GO:2001070: starch binding	6.16E-03
61	GO:0004605: phosphatidate cytidylyltransferase activity	6.16E-03
62	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.16E-03
63	GO:0001085: RNA polymerase II transcription factor binding	7.19E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.44E-03
65	GO:0004849: uridine kinase activity	7.44E-03
66	GO:0016832: aldehyde-lyase activity	7.44E-03
67	GO:0019900: kinase binding	7.44E-03
68	GO:0003777: microtubule motor activity	8.89E-03
69	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.89E-03
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.34E-02
71	GO:0000989: transcription factor activity, transcription factor binding	1.34E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.42E-02
73	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.53E-02
74	GO:0030247: polysaccharide binding	1.53E-02
75	GO:0019843: rRNA binding	1.63E-02
76	GO:0004673: protein histidine kinase activity	1.69E-02
77	GO:0003691: double-stranded telomeric DNA binding	1.87E-02
78	GO:0008515: sucrose transmembrane transporter activity	1.87E-02
79	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.87E-02
80	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.96E-02
81	GO:0031072: heat shock protein binding	2.25E-02
82	GO:0000155: phosphorelay sensor kinase activity	2.25E-02
83	GO:0003725: double-stranded RNA binding	2.25E-02
84	GO:0004022: alcohol dehydrogenase (NAD) activity	2.25E-02
85	GO:0003774: motor activity	2.46E-02
86	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.46E-02
87	GO:0004970: ionotropic glutamate receptor activity	2.67E-02
88	GO:0051119: sugar transmembrane transporter activity	2.67E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	2.67E-02
90	GO:0008134: transcription factor binding	3.10E-02
91	GO:0043424: protein histidine kinase binding	3.33E-02
92	GO:0005345: purine nucleobase transmembrane transporter activity	3.33E-02
93	GO:0016301: kinase activity	3.49E-02
94	GO:0008408: 3'-5' exonuclease activity	3.56E-02
95	GO:0004707: MAP kinase activity	3.56E-02
96	GO:0033612: receptor serine/threonine kinase binding	3.56E-02
97	GO:0003690: double-stranded DNA binding	3.86E-02
98	GO:0022891: substrate-specific transmembrane transporter activity	4.04E-02
99	GO:0016788: hydrolase activity, acting on ester bonds	4.32E-02
100	GO:0003682: chromatin binding	4.52E-02
101	GO:0004812: aminoacyl-tRNA ligase activity	4.54E-02
102	GO:0018024: histone-lysine N-methyltransferase activity	4.54E-02
103	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.91E-02
104	GO:0016874: ligase activity	4.98E-02