GO Enrichment Analysis of Co-expressed Genes with
AT4G22990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 4 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 5 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 7 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 8 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 9 | GO:0051322: anaphase | 3.91E-05 |
| 10 | GO:0010158: abaxial cell fate specification | 6.26E-05 |
| 11 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.26E-05 |
| 12 | GO:1902183: regulation of shoot apical meristem development | 6.26E-05 |
| 13 | GO:0009648: photoperiodism | 1.27E-04 |
| 14 | GO:0009585: red, far-red light phototransduction | 2.09E-04 |
| 15 | GO:0005991: trehalose metabolic process | 2.36E-04 |
| 16 | GO:0010450: inflorescence meristem growth | 2.36E-04 |
| 17 | GO:0051171: regulation of nitrogen compound metabolic process | 2.36E-04 |
| 18 | GO:0010482: regulation of epidermal cell division | 2.36E-04 |
| 19 | GO:0009090: homoserine biosynthetic process | 2.36E-04 |
| 20 | GO:0071028: nuclear mRNA surveillance | 2.36E-04 |
| 21 | GO:0006659: phosphatidylserine biosynthetic process | 2.36E-04 |
| 22 | GO:1902458: positive regulation of stomatal opening | 2.36E-04 |
| 23 | GO:0006177: GMP biosynthetic process | 2.36E-04 |
| 24 | GO:2000024: regulation of leaf development | 3.18E-04 |
| 25 | GO:0015804: neutral amino acid transport | 5.24E-04 |
| 26 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 5.24E-04 |
| 27 | GO:0034475: U4 snRNA 3'-end processing | 5.24E-04 |
| 28 | GO:2000039: regulation of trichome morphogenesis | 5.24E-04 |
| 29 | GO:0034755: iron ion transmembrane transport | 5.24E-04 |
| 30 | GO:1900871: chloroplast mRNA modification | 5.24E-04 |
| 31 | GO:0007154: cell communication | 5.24E-04 |
| 32 | GO:1900033: negative regulation of trichome patterning | 5.24E-04 |
| 33 | GO:0042814: monopolar cell growth | 5.24E-04 |
| 34 | GO:0031125: rRNA 3'-end processing | 5.24E-04 |
| 35 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.24E-04 |
| 36 | GO:0010289: homogalacturonan biosynthetic process | 5.24E-04 |
| 37 | GO:0016075: rRNA catabolic process | 8.52E-04 |
| 38 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 8.52E-04 |
| 39 | GO:0051127: positive regulation of actin nucleation | 8.52E-04 |
| 40 | GO:0045604: regulation of epidermal cell differentiation | 8.52E-04 |
| 41 | GO:0009150: purine ribonucleotide metabolic process | 8.52E-04 |
| 42 | GO:0001578: microtubule bundle formation | 8.52E-04 |
| 43 | GO:0045165: cell fate commitment | 8.52E-04 |
| 44 | GO:0042753: positive regulation of circadian rhythm | 9.25E-04 |
| 45 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.02E-03 |
| 46 | GO:0007166: cell surface receptor signaling pathway | 1.06E-03 |
| 47 | GO:0006164: purine nucleotide biosynthetic process | 1.21E-03 |
| 48 | GO:0009647: skotomorphogenesis | 1.21E-03 |
| 49 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.21E-03 |
| 50 | GO:0009226: nucleotide-sugar biosynthetic process | 1.21E-03 |
| 51 | GO:0048645: animal organ formation | 1.21E-03 |
| 52 | GO:0010255: glucose mediated signaling pathway | 1.21E-03 |
| 53 | GO:0048530: fruit morphogenesis | 1.21E-03 |
| 54 | GO:0006168: adenine salvage | 1.21E-03 |
| 55 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.21E-03 |
| 56 | GO:0009067: aspartate family amino acid biosynthetic process | 1.21E-03 |
| 57 | GO:0006166: purine ribonucleoside salvage | 1.21E-03 |
| 58 | GO:0009649: entrainment of circadian clock | 1.62E-03 |
| 59 | GO:0007020: microtubule nucleation | 1.62E-03 |
| 60 | GO:0006021: inositol biosynthetic process | 1.62E-03 |
| 61 | GO:0009165: nucleotide biosynthetic process | 1.62E-03 |
| 62 | GO:0048629: trichome patterning | 1.62E-03 |
| 63 | GO:0048367: shoot system development | 1.96E-03 |
| 64 | GO:0010154: fruit development | 2.00E-03 |
| 65 | GO:0046785: microtubule polymerization | 2.07E-03 |
| 66 | GO:0046283: anthocyanin-containing compound metabolic process | 2.07E-03 |
| 67 | GO:0044209: AMP salvage | 2.07E-03 |
| 68 | GO:0007018: microtubule-based movement | 2.15E-03 |
| 69 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.44E-03 |
| 70 | GO:0006139: nucleobase-containing compound metabolic process | 2.55E-03 |
| 71 | GO:0000741: karyogamy | 2.55E-03 |
| 72 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.55E-03 |
| 73 | GO:0042372: phylloquinone biosynthetic process | 3.06E-03 |
| 74 | GO:0009082: branched-chain amino acid biosynthetic process | 3.06E-03 |
| 75 | GO:0009099: valine biosynthetic process | 3.06E-03 |
| 76 | GO:0030488: tRNA methylation | 3.06E-03 |
| 77 | GO:0009088: threonine biosynthetic process | 3.06E-03 |
| 78 | GO:0048444: floral organ morphogenesis | 3.06E-03 |
| 79 | GO:0000910: cytokinesis | 3.36E-03 |
| 80 | GO:0009395: phospholipid catabolic process | 3.61E-03 |
| 81 | GO:0048528: post-embryonic root development | 3.61E-03 |
| 82 | GO:0009627: systemic acquired resistance | 3.97E-03 |
| 83 | GO:0016042: lipid catabolic process | 4.01E-03 |
| 84 | GO:0007155: cell adhesion | 4.19E-03 |
| 85 | GO:0070413: trehalose metabolism in response to stress | 4.19E-03 |
| 86 | GO:0010078: maintenance of root meristem identity | 4.19E-03 |
| 87 | GO:2000070: regulation of response to water deprivation | 4.19E-03 |
| 88 | GO:0052543: callose deposition in cell wall | 4.19E-03 |
| 89 | GO:0009097: isoleucine biosynthetic process | 4.79E-03 |
| 90 | GO:0006997: nucleus organization | 4.79E-03 |
| 91 | GO:0043562: cellular response to nitrogen levels | 4.79E-03 |
| 92 | GO:0010093: specification of floral organ identity | 4.79E-03 |
| 93 | GO:0006189: 'de novo' IMP biosynthetic process | 5.43E-03 |
| 94 | GO:0016051: carbohydrate biosynthetic process | 5.87E-03 |
| 95 | GO:0009638: phototropism | 6.09E-03 |
| 96 | GO:0009098: leucine biosynthetic process | 6.09E-03 |
| 97 | GO:0010018: far-red light signaling pathway | 6.09E-03 |
| 98 | GO:0009086: methionine biosynthetic process | 6.09E-03 |
| 99 | GO:1900865: chloroplast RNA modification | 6.09E-03 |
| 100 | GO:0010380: regulation of chlorophyll biosynthetic process | 6.09E-03 |
| 101 | GO:0071577: zinc II ion transmembrane transport | 6.09E-03 |
| 102 | GO:0005982: starch metabolic process | 6.09E-03 |
| 103 | GO:0006535: cysteine biosynthetic process from serine | 6.78E-03 |
| 104 | GO:0009641: shade avoidance | 6.78E-03 |
| 105 | GO:0006631: fatty acid metabolic process | 6.98E-03 |
| 106 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.50E-03 |
| 107 | GO:0006415: translational termination | 7.50E-03 |
| 108 | GO:1903507: negative regulation of nucleic acid-templated transcription | 7.50E-03 |
| 109 | GO:0006879: cellular iron ion homeostasis | 7.50E-03 |
| 110 | GO:0009684: indoleacetic acid biosynthetic process | 7.50E-03 |
| 111 | GO:0006790: sulfur compound metabolic process | 8.25E-03 |
| 112 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.25E-03 |
| 113 | GO:0010588: cotyledon vascular tissue pattern formation | 9.02E-03 |
| 114 | GO:0030036: actin cytoskeleton organization | 9.02E-03 |
| 115 | GO:0048467: gynoecium development | 9.82E-03 |
| 116 | GO:0010143: cutin biosynthetic process | 9.82E-03 |
| 117 | GO:0006541: glutamine metabolic process | 9.82E-03 |
| 118 | GO:0009933: meristem structural organization | 9.82E-03 |
| 119 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.06E-02 |
| 120 | GO:0090351: seedling development | 1.06E-02 |
| 121 | GO:0010030: positive regulation of seed germination | 1.06E-02 |
| 122 | GO:0006468: protein phosphorylation | 1.10E-02 |
| 123 | GO:0000162: tryptophan biosynthetic process | 1.15E-02 |
| 124 | GO:0006833: water transport | 1.15E-02 |
| 125 | GO:0019344: cysteine biosynthetic process | 1.24E-02 |
| 126 | GO:0007010: cytoskeleton organization | 1.24E-02 |
| 127 | GO:0010187: negative regulation of seed germination | 1.24E-02 |
| 128 | GO:0005992: trehalose biosynthetic process | 1.24E-02 |
| 129 | GO:0006418: tRNA aminoacylation for protein translation | 1.32E-02 |
| 130 | GO:0043622: cortical microtubule organization | 1.32E-02 |
| 131 | GO:0003333: amino acid transmembrane transport | 1.42E-02 |
| 132 | GO:0048511: rhythmic process | 1.42E-02 |
| 133 | GO:0006396: RNA processing | 1.50E-02 |
| 134 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.51E-02 |
| 135 | GO:0010091: trichome branching | 1.70E-02 |
| 136 | GO:0009306: protein secretion | 1.70E-02 |
| 137 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.80E-02 |
| 138 | GO:0042631: cellular response to water deprivation | 1.91E-02 |
| 139 | GO:0000226: microtubule cytoskeleton organization | 1.91E-02 |
| 140 | GO:0042335: cuticle development | 1.91E-02 |
| 141 | GO:0000271: polysaccharide biosynthetic process | 1.91E-02 |
| 142 | GO:0080022: primary root development | 1.91E-02 |
| 143 | GO:0034220: ion transmembrane transport | 1.91E-02 |
| 144 | GO:0010087: phloem or xylem histogenesis | 1.91E-02 |
| 145 | GO:0045489: pectin biosynthetic process | 2.01E-02 |
| 146 | GO:0008360: regulation of cell shape | 2.01E-02 |
| 147 | GO:0009958: positive gravitropism | 2.01E-02 |
| 148 | GO:0010197: polar nucleus fusion | 2.01E-02 |
| 149 | GO:0010182: sugar mediated signaling pathway | 2.01E-02 |
| 150 | GO:0009791: post-embryonic development | 2.23E-02 |
| 151 | GO:0048825: cotyledon development | 2.23E-02 |
| 152 | GO:0008654: phospholipid biosynthetic process | 2.23E-02 |
| 153 | GO:0009851: auxin biosynthetic process | 2.23E-02 |
| 154 | GO:0000302: response to reactive oxygen species | 2.34E-02 |
| 155 | GO:0010583: response to cyclopentenone | 2.45E-02 |
| 156 | GO:0016032: viral process | 2.45E-02 |
| 157 | GO:0007623: circadian rhythm | 2.53E-02 |
| 158 | GO:0045490: pectin catabolic process | 2.53E-02 |
| 159 | GO:0009639: response to red or far red light | 2.68E-02 |
| 160 | GO:0006464: cellular protein modification process | 2.68E-02 |
| 161 | GO:0048573: photoperiodism, flowering | 3.41E-02 |
| 162 | GO:0048481: plant ovule development | 3.67E-02 |
| 163 | GO:0009832: plant-type cell wall biogenesis | 3.80E-02 |
| 164 | GO:0009658: chloroplast organization | 3.90E-02 |
| 165 | GO:0016310: phosphorylation | 4.06E-02 |
| 166 | GO:0009910: negative regulation of flower development | 4.07E-02 |
| 167 | GO:0048527: lateral root development | 4.07E-02 |
| 168 | GO:0010119: regulation of stomatal movement | 4.07E-02 |
| 169 | GO:0006865: amino acid transport | 4.20E-02 |
| 170 | GO:0009853: photorespiration | 4.34E-02 |
| 171 | GO:0048366: leaf development | 4.58E-02 |
| 172 | GO:0006839: mitochondrial transport | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 2 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 3 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0008017: microtubule binding | 1.55E-05 |
| 6 | GO:0016788: hydrolase activity, acting on ester bonds | 4.67E-05 |
| 7 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.17E-04 |
| 8 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.36E-04 |
| 9 | GO:0004412: homoserine dehydrogenase activity | 5.24E-04 |
| 10 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 5.24E-04 |
| 11 | GO:0004512: inositol-3-phosphate synthase activity | 5.24E-04 |
| 12 | GO:0015172: acidic amino acid transmembrane transporter activity | 5.24E-04 |
| 13 | GO:0050017: L-3-cyanoalanine synthase activity | 5.24E-04 |
| 14 | GO:0017118: lipoyltransferase activity | 5.24E-04 |
| 15 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 5.24E-04 |
| 16 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.24E-04 |
| 17 | GO:0003938: IMP dehydrogenase activity | 5.24E-04 |
| 18 | GO:0002161: aminoacyl-tRNA editing activity | 8.52E-04 |
| 19 | GO:0004049: anthranilate synthase activity | 8.52E-04 |
| 20 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 1.21E-03 |
| 21 | GO:0004072: aspartate kinase activity | 1.21E-03 |
| 22 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.21E-03 |
| 23 | GO:0003999: adenine phosphoribosyltransferase activity | 1.21E-03 |
| 24 | GO:0052656: L-isoleucine transaminase activity | 1.21E-03 |
| 25 | GO:0047627: adenylylsulfatase activity | 1.21E-03 |
| 26 | GO:0052654: L-leucine transaminase activity | 1.21E-03 |
| 27 | GO:0052655: L-valine transaminase activity | 1.21E-03 |
| 28 | GO:0001872: (1->3)-beta-D-glucan binding | 1.21E-03 |
| 29 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.35E-03 |
| 30 | GO:0030570: pectate lyase activity | 1.47E-03 |
| 31 | GO:0080032: methyl jasmonate esterase activity | 1.62E-03 |
| 32 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.62E-03 |
| 33 | GO:0003777: microtubule motor activity | 1.73E-03 |
| 34 | GO:0016846: carbon-sulfur lyase activity | 2.07E-03 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.07E-03 |
| 36 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.55E-03 |
| 37 | GO:0042578: phosphoric ester hydrolase activity | 2.55E-03 |
| 38 | GO:0016208: AMP binding | 2.55E-03 |
| 39 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.55E-03 |
| 40 | GO:2001070: starch binding | 2.55E-03 |
| 41 | GO:0052689: carboxylic ester hydrolase activity | 2.70E-03 |
| 42 | GO:0016791: phosphatase activity | 2.99E-03 |
| 43 | GO:0003730: mRNA 3'-UTR binding | 3.06E-03 |
| 44 | GO:0004124: cysteine synthase activity | 3.06E-03 |
| 45 | GO:0030247: polysaccharide binding | 4.19E-03 |
| 46 | GO:0008173: RNA methyltransferase activity | 4.79E-03 |
| 47 | GO:0003747: translation release factor activity | 5.43E-03 |
| 48 | GO:0005381: iron ion transmembrane transporter activity | 6.09E-03 |
| 49 | GO:0003993: acid phosphatase activity | 6.14E-03 |
| 50 | GO:0042802: identical protein binding | 6.46E-03 |
| 51 | GO:0047372: acylglycerol lipase activity | 7.50E-03 |
| 52 | GO:0004185: serine-type carboxypeptidase activity | 7.57E-03 |
| 53 | GO:0000049: tRNA binding | 8.25E-03 |
| 54 | GO:0000175: 3'-5'-exoribonuclease activity | 9.02E-03 |
| 55 | GO:0005524: ATP binding | 9.55E-03 |
| 56 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.82E-03 |
| 57 | GO:0005528: FK506 binding | 1.24E-02 |
| 58 | GO:0003714: transcription corepressor activity | 1.24E-02 |
| 59 | GO:0005385: zinc ion transmembrane transporter activity | 1.24E-02 |
| 60 | GO:0008324: cation transmembrane transporter activity | 1.32E-02 |
| 61 | GO:0016874: ligase activity | 1.37E-02 |
| 62 | GO:0004176: ATP-dependent peptidase activity | 1.42E-02 |
| 63 | GO:0008408: 3'-5' exonuclease activity | 1.42E-02 |
| 64 | GO:0003727: single-stranded RNA binding | 1.70E-02 |
| 65 | GO:0004812: aminoacyl-tRNA ligase activity | 1.80E-02 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.88E-02 |
| 67 | GO:0016829: lyase activity | 1.98E-02 |
| 68 | GO:0001085: RNA polymerase II transcription factor binding | 2.01E-02 |
| 69 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.80E-02 |
| 70 | GO:0008237: metallopeptidase activity | 2.80E-02 |
| 71 | GO:0016597: amino acid binding | 2.92E-02 |
| 72 | GO:0015250: water channel activity | 3.04E-02 |
| 73 | GO:0016887: ATPase activity | 3.10E-02 |
| 74 | GO:0004721: phosphoprotein phosphatase activity | 3.41E-02 |
| 75 | GO:0015238: drug transmembrane transporter activity | 3.80E-02 |
| 76 | GO:0004222: metalloendopeptidase activity | 3.93E-02 |
| 77 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.07E-02 |
| 78 | GO:0050661: NADP binding | 4.76E-02 |
| 79 | GO:0004497: monooxygenase activity | 4.82E-02 |