Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G22756

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051924: regulation of calcium ion transport0.00E+00
2GO:0042407: cristae formation0.00E+00
3GO:0031116: positive regulation of microtubule polymerization0.00E+00
4GO:0010068: protoderm histogenesis0.00E+00
5GO:0042817: pyridoxal metabolic process0.00E+00
6GO:2001294: malonyl-CoA catabolic process0.00E+00
7GO:0008618: 7-methylguanosine metabolic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0010412: mannan metabolic process0.00E+00
10GO:0036265: RNA (guanine-N7)-methylation0.00E+00
11GO:0097275: cellular ammonia homeostasis0.00E+00
12GO:0090706: specification of plant organ position0.00E+00
13GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
14GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
15GO:0051322: anaphase5.21E-05
16GO:0009082: branched-chain amino acid biosynthetic process1.64E-04
17GO:0009099: valine biosynthetic process1.64E-04
18GO:0006400: tRNA modification2.16E-04
19GO:0007155: cell adhesion2.73E-04
20GO:0031426: polycistronic mRNA processing2.80E-04
21GO:0071028: nuclear mRNA surveillance2.80E-04
22GO:0043266: regulation of potassium ion transport2.80E-04
23GO:0006659: phosphatidylserine biosynthetic process2.80E-04
24GO:0043087: regulation of GTPase activity2.80E-04
25GO:2000021: regulation of ion homeostasis2.80E-04
26GO:0006264: mitochondrial DNA replication2.80E-04
27GO:0033259: plastid DNA replication2.80E-04
28GO:0048508: embryonic meristem development2.80E-04
29GO:0006177: GMP biosynthetic process2.80E-04
30GO:0010450: inflorescence meristem growth2.80E-04
31GO:0009097: isoleucine biosynthetic process3.35E-04
32GO:0010206: photosystem II repair4.05E-04
33GO:1900865: chloroplast RNA modification4.79E-04
34GO:0009658: chloroplast organization5.00E-04
35GO:0000910: cytokinesis5.11E-04
36GO:1900871: chloroplast mRNA modification6.14E-04
37GO:0009945: radial axis specification6.14E-04
38GO:0007154: cell communication6.14E-04
39GO:0006423: cysteinyl-tRNA aminoacylation6.14E-04
40GO:0031125: rRNA 3'-end processing6.14E-04
41GO:0071051: polyadenylation-dependent snoRNA 3'-end processing6.14E-04
42GO:0006739: NADP metabolic process6.14E-04
43GO:0034475: U4 snRNA 3'-end processing6.14E-04
44GO:0006753: nucleoside phosphate metabolic process9.96E-04
45GO:0080055: low-affinity nitrate transport9.96E-04
46GO:0001578: microtubule bundle formation9.96E-04
47GO:0045493: xylan catabolic process9.96E-04
48GO:0030261: chromosome condensation9.96E-04
49GO:0045165: cell fate commitment9.96E-04
50GO:0000913: preprophase band assembly9.96E-04
51GO:0016075: rRNA catabolic process9.96E-04
52GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'9.96E-04
53GO:0031022: nuclear migration along microfilament9.96E-04
54GO:0051127: positive regulation of actin nucleation9.96E-04
55GO:0019419: sulfate reduction9.96E-04
56GO:0080147: root hair cell development1.29E-03
57GO:0048645: animal organ formation1.42E-03
58GO:0008615: pyridoxine biosynthetic process1.42E-03
59GO:0006164: purine nucleotide biosynthetic process1.42E-03
60GO:0006168: adenine salvage1.42E-03
61GO:2001141: regulation of RNA biosynthetic process1.42E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.42E-03
63GO:0006166: purine ribonucleoside salvage1.42E-03
64GO:0010239: chloroplast mRNA processing1.42E-03
65GO:0007020: microtubule nucleation1.91E-03
66GO:0006021: inositol biosynthetic process1.91E-03
67GO:0006734: NADH metabolic process1.91E-03
68GO:0009902: chloroplast relocation1.91E-03
69GO:0009165: nucleotide biosynthetic process1.91E-03
70GO:0046355: mannan catabolic process1.91E-03
71GO:0010107: potassium ion import1.91E-03
72GO:0015846: polyamine transport1.91E-03
73GO:0046785: microtubule polymerization2.43E-03
74GO:0098719: sodium ion import across plasma membrane2.43E-03
75GO:0009904: chloroplast accumulation movement2.43E-03
76GO:1902183: regulation of shoot apical meristem development2.43E-03
77GO:0044209: AMP salvage2.43E-03
78GO:0010158: abaxial cell fate specification2.43E-03
79GO:0007018: microtubule-based movement2.73E-03
80GO:0009791: post-embryonic development2.93E-03
81GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.00E-03
82GO:0018258: protein O-linked glycosylation via hydroxyproline3.00E-03
83GO:0009635: response to herbicide3.00E-03
84GO:0010405: arabinogalactan protein metabolic process3.00E-03
85GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.00E-03
86GO:0006139: nucleobase-containing compound metabolic process3.00E-03
87GO:0016554: cytidine to uridine editing3.00E-03
88GO:0016032: viral process3.35E-03
89GO:0010583: response to cyclopentenone3.35E-03
90GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.54E-03
91GO:0030163: protein catabolic process3.57E-03
92GO:0009942: longitudinal axis specification3.62E-03
93GO:0048280: vesicle fusion with Golgi apparatus3.62E-03
94GO:0009903: chloroplast avoidance movement3.62E-03
95GO:0030488: tRNA methylation3.62E-03
96GO:0042372: phylloquinone biosynthetic process3.62E-03
97GO:0015937: coenzyme A biosynthetic process4.26E-03
98GO:0048528: post-embryonic root development4.26E-03
99GO:0010078: maintenance of root meristem identity4.95E-03
100GO:0009704: de-etiolation4.95E-03
101GO:0055075: potassium ion homeostasis4.95E-03
102GO:0043562: cellular response to nitrogen levels5.67E-03
103GO:0009808: lignin metabolic process5.67E-03
104GO:0010093: specification of floral organ identity5.67E-03
105GO:0006002: fructose 6-phosphate metabolic process5.67E-03
106GO:0071482: cellular response to light stimulus5.67E-03
107GO:2000024: regulation of leaf development6.43E-03
108GO:0090333: regulation of stomatal closure6.43E-03
109GO:0048507: meristem development6.43E-03
110GO:0000373: Group II intron splicing6.43E-03
111GO:0006189: 'de novo' IMP biosynthetic process6.43E-03
112GO:0006811: ion transport6.51E-03
113GO:0010018: far-red light signaling pathway7.22E-03
114GO:0048354: mucilage biosynthetic process involved in seed coat development7.22E-03
115GO:0051453: regulation of intracellular pH7.22E-03
116GO:0009638: phototropism7.22E-03
117GO:0043067: regulation of programmed cell death7.22E-03
118GO:0042761: very long-chain fatty acid biosynthetic process7.22E-03
119GO:0009098: leucine biosynthetic process7.22E-03
120GO:0006896: Golgi to vacuole transport8.04E-03
121GO:0000103: sulfate assimilation8.04E-03
122GO:0045036: protein targeting to chloroplast8.04E-03
123GO:0010192: mucilage biosynthetic process8.04E-03
124GO:0009299: mRNA transcription8.04E-03
125GO:0006468: protein phosphorylation8.87E-03
126GO:1903507: negative regulation of nucleic acid-templated transcription8.90E-03
127GO:0006352: DNA-templated transcription, initiation8.90E-03
128GO:0009684: indoleacetic acid biosynthetic process8.90E-03
129GO:0010152: pollen maturation9.79E-03
130GO:0045037: protein import into chloroplast stroma9.79E-03
131GO:0030036: actin cytoskeleton organization1.07E-02
132GO:0050826: response to freezing1.07E-02
133GO:0009725: response to hormone1.07E-02
134GO:0009767: photosynthetic electron transport chain1.07E-02
135GO:0010588: cotyledon vascular tissue pattern formation1.07E-02
136GO:0010020: chloroplast fission1.17E-02
137GO:0009933: meristem structural organization1.17E-02
138GO:0048467: gynoecium development1.17E-02
139GO:0009825: multidimensional cell growth1.26E-02
140GO:0090351: seedling development1.26E-02
141GO:0010030: positive regulation of seed germination1.26E-02
142GO:0009585: red, far-red light phototransduction1.31E-02
143GO:0010025: wax biosynthetic process1.37E-02
144GO:0042753: positive regulation of circadian rhythm1.37E-02
145GO:0007010: cytoskeleton organization1.47E-02
146GO:0005992: trehalose biosynthetic process1.47E-02
147GO:0019344: cysteine biosynthetic process1.47E-02
148GO:0009944: polarity specification of adaxial/abaxial axis1.47E-02
149GO:0043622: cortical microtubule organization1.58E-02
150GO:0007017: microtubule-based process1.58E-02
151GO:0010073: meristem maintenance1.58E-02
152GO:0048367: shoot system development1.60E-02
153GO:0046777: protein autophosphorylation1.62E-02
154GO:0051260: protein homooligomerization1.68E-02
155GO:2000022: regulation of jasmonic acid mediated signaling pathway1.80E-02
156GO:0035428: hexose transmembrane transport1.80E-02
157GO:0045454: cell redox homeostasis1.87E-02
158GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.15E-02
159GO:0042147: retrograde transport, endosome to Golgi2.15E-02
160GO:0042335: cuticle development2.27E-02
161GO:0080022: primary root development2.27E-02
162GO:0010087: phloem or xylem histogenesis2.27E-02
163GO:0048653: anther development2.27E-02
164GO:0042631: cellular response to water deprivation2.27E-02
165GO:0045489: pectin biosynthetic process2.39E-02
166GO:0010154: fruit development2.39E-02
167GO:0010197: polar nucleus fusion2.39E-02
168GO:0010182: sugar mediated signaling pathway2.39E-02
169GO:0046323: glucose import2.39E-02
170GO:0009958: positive gravitropism2.39E-02
171GO:0006885: regulation of pH2.39E-02
172GO:0006814: sodium ion transport2.52E-02
173GO:0055114: oxidation-reduction process2.56E-02
174GO:0048825: cotyledon development2.65E-02
175GO:0008654: phospholipid biosynthetic process2.65E-02
176GO:0009851: auxin biosynthetic process2.65E-02
177GO:0006623: protein targeting to vacuole2.65E-02
178GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.78E-02
179GO:0006891: intra-Golgi vesicle-mediated transport2.78E-02
180GO:0006413: translational initiation3.01E-02
181GO:1901657: glycosyl compound metabolic process3.05E-02
182GO:0009639: response to red or far red light3.19E-02
183GO:0006464: cellular protein modification process3.19E-02
184GO:0045490: pectin catabolic process3.22E-02
185GO:0006508: proteolysis3.62E-02
186GO:0007166: cell surface receptor signaling pathway3.68E-02
187GO:0009627: systemic acquired resistance3.91E-02
188GO:0010411: xyloglucan metabolic process4.06E-02
189GO:0006888: ER to Golgi vesicle-mediated transport4.06E-02
190GO:0071555: cell wall organization4.10E-02
191GO:0009651: response to salt stress4.25E-02
192GO:0030244: cellulose biosynthetic process4.37E-02
193GO:0009735: response to cytokinin4.43E-02
194GO:0006499: N-terminal protein myristoylation4.68E-02
195GO:0009826: unidimensional cell growth4.78E-02
196GO:0048527: lateral root development4.84E-02
197GO:0009416: response to light stimulus4.94E-02
198GO:0006865: amino acid transport5.00E-02
RankGO TermAdjusted P value
1GO:0019808: polyamine binding0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:1990534: thermospermine oxidase activity0.00E+00
6GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
7GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
8GO:0019136: deoxynucleoside kinase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0008017: microtubule binding3.01E-05
11GO:0000293: ferric-chelate reductase activity1.20E-04
12GO:0003984: acetolactate synthase activity2.80E-04
13GO:0052856: NADHX epimerase activity2.80E-04
14GO:0052857: NADPHX epimerase activity2.80E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity2.80E-04
16GO:0004733: pyridoxamine-phosphate oxidase activity2.80E-04
17GO:0010945: CoA pyrophosphatase activity2.80E-04
18GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity6.14E-04
19GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding6.14E-04
20GO:0004512: inositol-3-phosphate synthase activity6.14E-04
21GO:0048531: beta-1,3-galactosyltransferase activity6.14E-04
22GO:0017118: lipoyltransferase activity6.14E-04
23GO:0043425: bHLH transcription factor binding6.14E-04
24GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.14E-04
25GO:0033741: adenylyl-sulfate reductase (glutathione) activity6.14E-04
26GO:0003938: IMP dehydrogenase activity6.14E-04
27GO:0004817: cysteine-tRNA ligase activity6.14E-04
28GO:0009973: adenylyl-sulfate reductase activity6.14E-04
29GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.14E-04
30GO:0004148: dihydrolipoyl dehydrogenase activity9.96E-04
31GO:0080054: low-affinity nitrate transmembrane transporter activity9.96E-04
32GO:0003999: adenine phosphoribosyltransferase activity1.42E-03
33GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.42E-03
34GO:0052656: L-isoleucine transaminase activity1.42E-03
35GO:0052654: L-leucine transaminase activity1.42E-03
36GO:0052655: L-valine transaminase activity1.42E-03
37GO:0048027: mRNA 5'-UTR binding1.42E-03
38GO:0030570: pectate lyase activity1.86E-03
39GO:0009044: xylan 1,4-beta-xylosidase activity1.91E-03
40GO:0004084: branched-chain-amino-acid transaminase activity1.91E-03
41GO:0046556: alpha-L-arabinofuranosidase activity1.91E-03
42GO:0001053: plastid sigma factor activity1.91E-03
43GO:0004737: pyruvate decarboxylase activity1.91E-03
44GO:0008409: 5'-3' exonuclease activity1.91E-03
45GO:0016985: mannan endo-1,4-beta-mannosidase activity1.91E-03
46GO:0016987: sigma factor activity1.91E-03
47GO:0003777: microtubule motor activity2.35E-03
48GO:0016773: phosphotransferase activity, alcohol group as acceptor2.43E-03
49GO:0016846: carbon-sulfur lyase activity2.43E-03
50GO:0005524: ATP binding2.69E-03
51GO:0010181: FMN binding2.73E-03
52GO:0000210: NAD+ diphosphatase activity3.00E-03
53GO:0016208: AMP binding3.00E-03
54GO:0042578: phosphoric ester hydrolase activity3.00E-03
55GO:0015081: sodium ion transmembrane transporter activity3.00E-03
56GO:0030976: thiamine pyrophosphate binding3.00E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity3.00E-03
58GO:0004709: MAP kinase kinase kinase activity3.00E-03
59GO:0016832: aldehyde-lyase activity3.62E-03
60GO:0009927: histidine phosphotransfer kinase activity3.62E-03
61GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.62E-03
62GO:0003872: 6-phosphofructokinase activity4.26E-03
63GO:0004252: serine-type endopeptidase activity4.92E-03
64GO:0043022: ribosome binding4.95E-03
65GO:0030247: polysaccharide binding5.33E-03
66GO:0008236: serine-type peptidase activity5.62E-03
67GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.94E-03
68GO:0004805: trehalose-phosphatase activity8.04E-03
69GO:0015386: potassium:proton antiporter activity8.90E-03
70GO:0008794: arsenate reductase (glutaredoxin) activity8.90E-03
71GO:0008559: xenobiotic-transporting ATPase activity8.90E-03
72GO:0000175: 3'-5'-exoribonuclease activity1.07E-02
73GO:0008131: primary amine oxidase activity1.17E-02
74GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.17E-02
75GO:0050660: flavin adenine dinucleotide binding1.36E-02
76GO:0003887: DNA-directed DNA polymerase activity1.37E-02
77GO:0003714: transcription corepressor activity1.47E-02
78GO:0005528: FK506 binding1.47E-02
79GO:0019706: protein-cysteine S-palmitoyltransferase activity1.68E-02
80GO:0008408: 3'-5' exonuclease activity1.68E-02
81GO:0004871: signal transducer activity1.99E-02
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.19E-02
83GO:0046872: metal ion binding2.42E-02
84GO:0003924: GTPase activity2.44E-02
85GO:0005355: glucose transmembrane transporter activity2.52E-02
86GO:0016829: lyase activity2.53E-02
87GO:0008565: protein transporter activity2.80E-02
88GO:0005525: GTP binding3.03E-02
89GO:0015385: sodium:proton antiporter activity3.05E-02
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.05E-02
91GO:0016301: kinase activity3.24E-02
92GO:0016722: oxidoreductase activity, oxidizing metal ions3.33E-02
93GO:0005200: structural constituent of cytoskeleton3.33E-02
94GO:0003743: translation initiation factor activity3.76E-02
95GO:0004674: protein serine/threonine kinase activity3.78E-02
96GO:0004721: phosphoprotein phosphatase activity4.06E-02
97GO:0102483: scopolin beta-glucosidase activity4.06E-02
98GO:0005096: GTPase activator activity4.52E-02
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.84E-02
100GO:0016787: hydrolase activity4.84E-02
101GO:0050897: cobalt ion binding4.84E-02
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Gene type



Gene DE type