Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G22290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2001294: malonyl-CoA catabolic process0.00E+00
2GO:0010412: mannan metabolic process0.00E+00
3GO:0015843: methylammonium transport0.00E+00
4GO:0070979: protein K11-linked ubiquitination0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0090706: specification of plant organ position0.00E+00
8GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
11GO:0010068: protoderm histogenesis0.00E+00
12GO:2000121: regulation of removal of superoxide radicals0.00E+00
13GO:0007037: vacuolar phosphate transport0.00E+00
14GO:0007638: mechanosensory behavior0.00E+00
15GO:0031129: inductive cell-cell signaling0.00E+00
16GO:0051322: anaphase1.27E-04
17GO:0009585: red, far-red light phototransduction1.75E-04
18GO:1902183: regulation of shoot apical meristem development1.96E-04
19GO:0010158: abaxial cell fate specification1.96E-04
20GO:0045038: protein import into chloroplast thylakoid membrane1.96E-04
21GO:0009082: branched-chain amino acid biosynthetic process3.72E-04
22GO:0009099: valine biosynthetic process3.72E-04
23GO:0006468: protein phosphorylation3.97E-04
24GO:0043087: regulation of GTPase activity4.76E-04
25GO:2000021: regulation of ion homeostasis4.76E-04
26GO:0006264: mitochondrial DNA replication4.76E-04
27GO:0033259: plastid DNA replication4.76E-04
28GO:1902458: positive regulation of stomatal opening4.76E-04
29GO:0048508: embryonic meristem development4.76E-04
30GO:0006177: GMP biosynthetic process4.76E-04
31GO:0010450: inflorescence meristem growth4.76E-04
32GO:0051171: regulation of nitrogen compound metabolic process4.76E-04
33GO:0010482: regulation of epidermal cell division4.76E-04
34GO:0071028: nuclear mRNA surveillance4.76E-04
35GO:0043266: regulation of potassium ion transport4.76E-04
36GO:0006659: phosphatidylserine biosynthetic process4.76E-04
37GO:0007155: cell adhesion5.96E-04
38GO:0009097: isoleucine biosynthetic process7.27E-04
39GO:2000024: regulation of leaf development8.70E-04
40GO:0031648: protein destabilization1.02E-03
41GO:0031125: rRNA 3'-end processing1.02E-03
42GO:1903426: regulation of reactive oxygen species biosynthetic process1.02E-03
43GO:0015804: neutral amino acid transport1.02E-03
44GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.02E-03
45GO:0009638: phototropism1.02E-03
46GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.02E-03
47GO:0010115: regulation of abscisic acid biosynthetic process1.02E-03
48GO:0034475: U4 snRNA 3'-end processing1.02E-03
49GO:1900871: chloroplast mRNA modification1.02E-03
50GO:1900865: chloroplast RNA modification1.02E-03
51GO:0007154: cell communication1.02E-03
52GO:2000039: regulation of trichome morphogenesis1.02E-03
53GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.02E-03
54GO:1900033: negative regulation of trichome patterning1.02E-03
55GO:0009945: radial axis specification1.02E-03
56GO:0080175: phragmoplast microtubule organization1.02E-03
57GO:0042814: monopolar cell growth1.02E-03
58GO:0007166: cell surface receptor signaling pathway1.18E-03
59GO:0001578: microtubule bundle formation1.67E-03
60GO:0045165: cell fate commitment1.67E-03
61GO:0016075: rRNA catabolic process1.67E-03
62GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.67E-03
63GO:0051127: positive regulation of actin nucleation1.67E-03
64GO:0019419: sulfate reduction1.67E-03
65GO:0031145: anaphase-promoting complex-dependent catabolic process1.67E-03
66GO:0070475: rRNA base methylation1.67E-03
67GO:0080055: low-affinity nitrate transport1.67E-03
68GO:0045604: regulation of epidermal cell differentiation1.67E-03
69GO:0006753: nucleoside phosphate metabolic process1.67E-03
70GO:0048573: photoperiodism, flowering1.81E-03
71GO:0009658: chloroplast organization2.02E-03
72GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.42E-03
73GO:0009067: aspartate family amino acid biosynthetic process2.42E-03
74GO:0006166: purine ribonucleoside salvage2.42E-03
75GO:0007231: osmosensory signaling pathway2.42E-03
76GO:0030071: regulation of mitotic metaphase/anaphase transition2.42E-03
77GO:0051639: actin filament network formation2.42E-03
78GO:0009647: skotomorphogenesis2.42E-03
79GO:0048645: animal organ formation2.42E-03
80GO:0010255: glucose mediated signaling pathway2.42E-03
81GO:0015696: ammonium transport2.42E-03
82GO:0048530: fruit morphogenesis2.42E-03
83GO:0006168: adenine salvage2.42E-03
84GO:0006164: purine nucleotide biosynthetic process2.42E-03
85GO:0009963: positive regulation of flavonoid biosynthetic process2.42E-03
86GO:0010187: negative regulation of seed germination2.80E-03
87GO:0019344: cysteine biosynthetic process2.80E-03
88GO:0009944: polarity specification of adaxial/abaxial axis2.80E-03
89GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.13E-03
90GO:0009165: nucleotide biosynthetic process3.26E-03
91GO:0048629: trichome patterning3.26E-03
92GO:0051764: actin crosslink formation3.26E-03
93GO:0033500: carbohydrate homeostasis3.26E-03
94GO:0046355: mannan catabolic process3.26E-03
95GO:0072488: ammonium transmembrane transport3.26E-03
96GO:0006021: inositol biosynthetic process3.26E-03
97GO:0009649: entrainment of circadian clock3.26E-03
98GO:0007020: microtubule nucleation3.26E-03
99GO:0016310: phosphorylation3.53E-03
100GO:2000022: regulation of jasmonic acid mediated signaling pathway3.72E-03
101GO:0044209: AMP salvage4.18E-03
102GO:0051225: spindle assembly4.18E-03
103GO:0032876: negative regulation of DNA endoreduplication4.18E-03
104GO:0046785: microtubule polymerization4.18E-03
105GO:0034052: positive regulation of plant-type hypersensitive response4.18E-03
106GO:0046283: anthocyanin-containing compound metabolic process4.18E-03
107GO:0006544: glycine metabolic process4.18E-03
108GO:0000741: karyogamy5.18E-03
109GO:0006561: proline biosynthetic process5.18E-03
110GO:0006563: L-serine metabolic process5.18E-03
111GO:0010087: phloem or xylem histogenesis5.18E-03
112GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.18E-03
113GO:0009959: negative gravitropism5.18E-03
114GO:0006139: nucleobase-containing compound metabolic process5.18E-03
115GO:0016554: cytidine to uridine editing5.18E-03
116GO:0045962: positive regulation of development, heterochronic5.18E-03
117GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.18E-03
118GO:0009117: nucleotide metabolic process5.18E-03
119GO:0009635: response to herbicide5.18E-03
120GO:0010182: sugar mediated signaling pathway5.59E-03
121GO:0010154: fruit development5.59E-03
122GO:0009088: threonine biosynthetic process6.24E-03
123GO:0048444: floral organ morphogenesis6.24E-03
124GO:0080086: stamen filament development6.24E-03
125GO:0009648: photoperiodism6.24E-03
126GO:0042372: phylloquinone biosynthetic process6.24E-03
127GO:0009942: longitudinal axis specification6.24E-03
128GO:0048280: vesicle fusion with Golgi apparatus6.24E-03
129GO:0010189: vitamin E biosynthetic process6.24E-03
130GO:0008654: phospholipid biosynthetic process6.45E-03
131GO:0048367: shoot system development7.31E-03
132GO:0010161: red light signaling pathway7.39E-03
133GO:0009610: response to symbiotic fungus7.39E-03
134GO:0048528: post-embryonic root development7.39E-03
135GO:0010583: response to cyclopentenone7.39E-03
136GO:0015937: coenzyme A biosynthetic process7.39E-03
137GO:0009740: gibberellic acid mediated signaling pathway8.24E-03
138GO:0006402: mRNA catabolic process8.60E-03
139GO:0043068: positive regulation of programmed cell death8.60E-03
140GO:0010078: maintenance of root meristem identity8.60E-03
141GO:0009704: de-etiolation8.60E-03
142GO:0032875: regulation of DNA endoreduplication8.60E-03
143GO:2000070: regulation of response to water deprivation8.60E-03
144GO:0042255: ribosome assembly8.60E-03
145GO:0046620: regulation of organ growth8.60E-03
146GO:0006353: DNA-templated transcription, termination8.60E-03
147GO:0009733: response to auxin9.31E-03
148GO:0000910: cytokinesis9.47E-03
149GO:0043562: cellular response to nitrogen levels9.88E-03
150GO:0009808: lignin metabolic process9.88E-03
151GO:0010093: specification of floral organ identity9.88E-03
152GO:0010099: regulation of photomorphogenesis9.88E-03
153GO:0006002: fructose 6-phosphate metabolic process9.88E-03
154GO:0010100: negative regulation of photomorphogenesis9.88E-03
155GO:0006997: nucleus organization9.88E-03
156GO:0009627: systemic acquired resistance1.12E-02
157GO:0051865: protein autoubiquitination1.12E-02
158GO:0009051: pentose-phosphate shunt, oxidative branch1.12E-02
159GO:0010206: photosystem II repair1.12E-02
160GO:0006783: heme biosynthetic process1.12E-02
161GO:0000373: Group II intron splicing1.12E-02
162GO:0006189: 'de novo' IMP biosynthetic process1.12E-02
163GO:0071577: zinc II ion transmembrane transport1.26E-02
164GO:0042761: very long-chain fatty acid biosynthetic process1.26E-02
165GO:0009098: leucine biosynthetic process1.26E-02
166GO:0010018: far-red light signaling pathway1.26E-02
167GO:0048354: mucilage biosynthetic process involved in seed coat development1.26E-02
168GO:0010380: regulation of chlorophyll biosynthetic process1.26E-02
169GO:0030244: cellulose biosynthetic process1.31E-02
170GO:0009688: abscisic acid biosynthetic process1.41E-02
171GO:0045036: protein targeting to chloroplast1.41E-02
172GO:0009641: shade avoidance1.41E-02
173GO:0010192: mucilage biosynthetic process1.41E-02
174GO:0009299: mRNA transcription1.41E-02
175GO:0006535: cysteine biosynthetic process from serine1.41E-02
176GO:0006896: Golgi to vacuole transport1.41E-02
177GO:0000103: sulfate assimilation1.41E-02
178GO:0006415: translational termination1.56E-02
179GO:0009684: indoleacetic acid biosynthetic process1.56E-02
180GO:0009089: lysine biosynthetic process via diaminopimelate1.56E-02
181GO:0006816: calcium ion transport1.56E-02
182GO:0009773: photosynthetic electron transport in photosystem I1.56E-02
183GO:1903507: negative regulation of nucleic acid-templated transcription1.56E-02
184GO:0009750: response to fructose1.56E-02
185GO:0040008: regulation of growth1.68E-02
186GO:0010152: pollen maturation1.72E-02
187GO:0007623: circadian rhythm1.79E-02
188GO:0030036: actin cytoskeleton organization1.88E-02
189GO:0009725: response to hormone1.88E-02
190GO:0010588: cotyledon vascular tissue pattern formation1.88E-02
191GO:0010628: positive regulation of gene expression1.88E-02
192GO:0006006: glucose metabolic process1.88E-02
193GO:0006839: mitochondrial transport1.90E-02
194GO:0006631: fatty acid metabolic process1.99E-02
195GO:0048467: gynoecium development2.05E-02
196GO:0006541: glutamine metabolic process2.05E-02
197GO:0009933: meristem structural organization2.05E-02
198GO:0008283: cell proliferation2.16E-02
199GO:0009825: multidimensional cell growth2.23E-02
200GO:0090351: seedling development2.23E-02
201GO:0010030: positive regulation of seed germination2.23E-02
202GO:0070588: calcium ion transmembrane transport2.23E-02
203GO:0055114: oxidation-reduction process2.24E-02
204GO:0009833: plant-type primary cell wall biogenesis2.41E-02
205GO:0000162: tryptophan biosynthetic process2.41E-02
206GO:0010025: wax biosynthetic process2.41E-02
207GO:0042753: positive regulation of circadian rhythm2.41E-02
208GO:0009965: leaf morphogenesis2.42E-02
209GO:0006855: drug transmembrane transport2.52E-02
210GO:0005992: trehalose biosynthetic process2.59E-02
211GO:0000027: ribosomal large subunit assembly2.59E-02
212GO:0051017: actin filament bundle assembly2.59E-02
213GO:0007010: cytoskeleton organization2.59E-02
214GO:0010073: meristem maintenance2.78E-02
215GO:0043622: cortical microtubule organization2.78E-02
216GO:0051260: protein homooligomerization2.97E-02
217GO:0003333: amino acid transmembrane transport2.97E-02
218GO:0006730: one-carbon metabolic process3.17E-02
219GO:0009814: defense response, incompatible interaction3.17E-02
220GO:0010017: red or far-red light signaling pathway3.17E-02
221GO:0035428: hexose transmembrane transport3.17E-02
222GO:0010082: regulation of root meristem growth3.37E-02
223GO:0009686: gibberellin biosynthetic process3.37E-02
224GO:0010214: seed coat development3.58E-02
225GO:0010091: trichome branching3.58E-02
226GO:0009306: protein secretion3.58E-02
227GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.79E-02
228GO:0042147: retrograde transport, endosome to Golgi3.79E-02
229GO:0048653: anther development4.01E-02
230GO:0042631: cellular response to water deprivation4.01E-02
231GO:0000226: microtubule cytoskeleton organization4.01E-02
232GO:0000271: polysaccharide biosynthetic process4.01E-02
233GO:0080022: primary root development4.01E-02
234GO:0042335: cuticle development4.01E-02
235GO:0008033: tRNA processing4.01E-02
236GO:0009624: response to nematode4.13E-02
237GO:0010197: polar nucleus fusion4.23E-02
238GO:0046323: glucose import4.23E-02
239GO:0008360: regulation of cell shape4.23E-02
240GO:0009958: positive gravitropism4.23E-02
241GO:0045489: pectin biosynthetic process4.23E-02
242GO:0046777: protein autophosphorylation4.38E-02
243GO:0007018: microtubule-based movement4.45E-02
244GO:0009851: auxin biosynthetic process4.68E-02
245GO:0048825: cotyledon development4.68E-02
246GO:0006623: protein targeting to vacuole4.68E-02
247GO:0009791: post-embryonic development4.68E-02
248GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.91E-02
249GO:0006891: intra-Golgi vesicle-mediated transport4.91E-02
RankGO TermAdjusted P value
1GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity0.00E+00
2GO:1990534: thermospermine oxidase activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0010276: phytol kinase activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
8GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
9GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.61E-04
10GO:0010313: phytochrome binding4.76E-04
11GO:0050139: nicotinate-N-glucosyltransferase activity4.76E-04
12GO:0010945: CoA pyrophosphatase activity4.76E-04
13GO:0003984: acetolactate synthase activity4.76E-04
14GO:0016301: kinase activity5.27E-04
15GO:0008017: microtubule binding1.01E-03
16GO:0050017: L-3-cyanoalanine synthase activity1.02E-03
17GO:0017118: lipoyltransferase activity1.02E-03
18GO:0043425: bHLH transcription factor binding1.02E-03
19GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.02E-03
20GO:0009977: proton motive force dependent protein transmembrane transporter activity1.02E-03
21GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.02E-03
22GO:0003938: IMP dehydrogenase activity1.02E-03
23GO:0009973: adenylyl-sulfate reductase activity1.02E-03
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.02E-03
25GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.02E-03
26GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.02E-03
27GO:0015172: acidic amino acid transmembrane transporter activity1.02E-03
28GO:0004512: inositol-3-phosphate synthase activity1.02E-03
29GO:0004049: anthranilate synthase activity1.67E-03
30GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.67E-03
31GO:0080054: low-affinity nitrate transmembrane transporter activity1.67E-03
32GO:0070330: aromatase activity1.67E-03
33GO:0003913: DNA photolyase activity1.67E-03
34GO:0004148: dihydrolipoyl dehydrogenase activity1.67E-03
35GO:0004674: protein serine/threonine kinase activity2.08E-03
36GO:0052654: L-leucine transaminase activity2.42E-03
37GO:0052655: L-valine transaminase activity2.42E-03
38GO:0035529: NADH pyrophosphatase activity2.42E-03
39GO:0004072: aspartate kinase activity2.42E-03
40GO:0000254: C-4 methylsterol oxidase activity2.42E-03
41GO:0015175: neutral amino acid transmembrane transporter activity2.42E-03
42GO:0003999: adenine phosphoribosyltransferase activity2.42E-03
43GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.42E-03
44GO:0017172: cysteine dioxygenase activity2.42E-03
45GO:0052656: L-isoleucine transaminase activity2.42E-03
46GO:0004737: pyruvate decarboxylase activity3.26E-03
47GO:0004345: glucose-6-phosphate dehydrogenase activity3.26E-03
48GO:0008409: 5'-3' exonuclease activity3.26E-03
49GO:0016985: mannan endo-1,4-beta-mannosidase activity3.26E-03
50GO:0080032: methyl jasmonate esterase activity3.26E-03
51GO:0004084: branched-chain-amino-acid transaminase activity3.26E-03
52GO:0030570: pectate lyase activity4.06E-03
53GO:0004372: glycine hydroxymethyltransferase activity4.18E-03
54GO:0016846: carbon-sulfur lyase activity4.18E-03
55GO:0018685: alkane 1-monooxygenase activity4.18E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor4.18E-03
57GO:0003727: single-stranded RNA binding4.42E-03
58GO:0042578: phosphoric ester hydrolase activity5.18E-03
59GO:0008519: ammonium transmembrane transporter activity5.18E-03
60GO:0030976: thiamine pyrophosphate binding5.18E-03
61GO:0004605: phosphatidate cytidylyltransferase activity5.18E-03
62GO:0004709: MAP kinase kinase kinase activity5.18E-03
63GO:0000210: NAD+ diphosphatase activity5.18E-03
64GO:0016208: AMP binding5.18E-03
65GO:0016462: pyrophosphatase activity5.18E-03
66GO:0042802: identical protein binding6.01E-03
67GO:0004124: cysteine synthase activity6.24E-03
68GO:0003730: mRNA 3'-UTR binding6.24E-03
69GO:0016832: aldehyde-lyase activity6.24E-03
70GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.24E-03
71GO:0003872: 6-phosphofructokinase activity7.39E-03
72GO:0016788: hydrolase activity, acting on ester bonds8.35E-03
73GO:0043022: ribosome binding8.60E-03
74GO:0005524: ATP binding1.06E-02
75GO:0003747: translation release factor activity1.12E-02
76GO:0030247: polysaccharide binding1.18E-02
77GO:0052689: carboxylic ester hydrolase activity1.31E-02
78GO:0016829: lyase activity1.31E-02
79GO:0015238: drug transmembrane transporter activity1.38E-02
80GO:0004713: protein tyrosine kinase activity1.41E-02
81GO:0004805: trehalose-phosphatase activity1.41E-02
82GO:0050897: cobalt ion binding1.52E-02
83GO:0047372: acylglycerol lipase activity1.56E-02
84GO:0008794: arsenate reductase (glutaredoxin) activity1.56E-02
85GO:0004672: protein kinase activity1.64E-02
86GO:0004089: carbonate dehydratase activity1.88E-02
87GO:0031072: heat shock protein binding1.88E-02
88GO:0005262: calcium channel activity1.88E-02
89GO:0000175: 3'-5'-exoribonuclease activity1.88E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity1.88E-02
91GO:0005506: iron ion binding1.93E-02
92GO:0008131: primary amine oxidase activity2.05E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.05E-02
94GO:0035091: phosphatidylinositol binding2.33E-02
95GO:0003887: DNA-directed DNA polymerase activity2.41E-02
96GO:0005385: zinc ion transmembrane transporter activity2.59E-02
97GO:0005528: FK506 binding2.59E-02
98GO:0003714: transcription corepressor activity2.59E-02
99GO:0015079: potassium ion transmembrane transporter activity2.78E-02
100GO:0008324: cation transmembrane transporter activity2.78E-02
101GO:0019825: oxygen binding2.89E-02
102GO:0019706: protein-cysteine S-palmitoyltransferase activity2.97E-02
103GO:0008408: 3'-5' exonuclease activity2.97E-02
104GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.17E-02
105GO:0003777: microtubule motor activity3.22E-02
106GO:0016760: cellulose synthase (UDP-forming) activity3.37E-02
107GO:0050660: flavin adenine dinucleotide binding3.71E-02
108GO:0046872: metal ion binding4.22E-02
109GO:0001085: RNA polymerase II transcription factor binding4.23E-02
110GO:0005355: glucose transmembrane transporter activity4.45E-02
111GO:0010181: FMN binding4.45E-02
112GO:0020037: heme binding4.62E-02
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Gene type



Gene DE type