Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G22010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
2GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0006167: AMP biosynthetic process0.00E+00
6GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
7GO:0045184: establishment of protein localization0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0046040: IMP metabolic process0.00E+00
10GO:1905421: regulation of plant organ morphogenesis0.00E+00
11GO:0030155: regulation of cell adhesion0.00E+00
12GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
13GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
14GO:0009658: chloroplast organization1.54E-10
15GO:0042793: transcription from plastid promoter2.82E-08
16GO:0009657: plastid organization3.71E-07
17GO:0009451: RNA modification1.14E-06
18GO:1901259: chloroplast rRNA processing6.76E-06
19GO:0006353: DNA-templated transcription, termination1.61E-05
20GO:0010239: chloroplast mRNA processing5.41E-05
21GO:0010020: chloroplast fission1.24E-04
22GO:0009793: embryo development ending in seed dormancy1.77E-04
23GO:0042026: protein refolding2.85E-04
24GO:0048437: floral organ development3.69E-04
25GO:0070509: calcium ion import3.99E-04
26GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.99E-04
27GO:0090558: plant epidermis development3.99E-04
28GO:0010063: positive regulation of trichoblast fate specification3.99E-04
29GO:0010480: microsporocyte differentiation3.99E-04
30GO:0042371: vitamin K biosynthetic process3.99E-04
31GO:0035987: endodermal cell differentiation3.99E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation3.99E-04
33GO:0006747: FAD biosynthetic process3.99E-04
34GO:0006419: alanyl-tRNA aminoacylation3.99E-04
35GO:0042659: regulation of cell fate specification3.99E-04
36GO:0009790: embryo development4.35E-04
37GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.73E-04
38GO:0009664: plant-type cell wall organization6.37E-04
39GO:0032502: developmental process7.26E-04
40GO:0009828: plant-type cell wall loosening8.51E-04
41GO:1900871: chloroplast mRNA modification8.66E-04
42GO:0060359: response to ammonium ion8.66E-04
43GO:0048255: mRNA stabilization8.66E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.66E-04
45GO:0018026: peptidyl-lysine monomethylation8.66E-04
46GO:0009662: etioplast organization8.66E-04
47GO:0042325: regulation of phosphorylation8.66E-04
48GO:0015712: hexose phosphate transport8.66E-04
49GO:0009220: pyrimidine ribonucleotide biosynthetic process8.66E-04
50GO:0044208: 'de novo' AMP biosynthetic process8.66E-04
51GO:1904143: positive regulation of carotenoid biosynthetic process8.66E-04
52GO:0006949: syncytium formation9.28E-04
53GO:0010027: thylakoid membrane organization1.06E-03
54GO:0010411: xyloglucan metabolic process1.30E-03
55GO:0006954: inflammatory response1.40E-03
56GO:0035436: triose phosphate transmembrane transport1.40E-03
57GO:0042780: tRNA 3'-end processing1.40E-03
58GO:0001578: microtubule bundle formation1.40E-03
59GO:0043157: response to cation stress1.40E-03
60GO:0005977: glycogen metabolic process1.40E-03
61GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.40E-03
62GO:0045910: negative regulation of DNA recombination1.40E-03
63GO:0048281: inflorescence morphogenesis1.40E-03
64GO:0090708: specification of plant organ axis polarity1.40E-03
65GO:0044211: CTP salvage2.03E-03
66GO:0019048: modulation by virus of host morphology or physiology2.03E-03
67GO:0046739: transport of virus in multicellular host2.03E-03
68GO:2000904: regulation of starch metabolic process2.03E-03
69GO:0006164: purine nucleotide biosynthetic process2.03E-03
70GO:0031048: chromatin silencing by small RNA2.03E-03
71GO:0010148: transpiration2.03E-03
72GO:0043572: plastid fission2.03E-03
73GO:2001141: regulation of RNA biosynthetic process2.03E-03
74GO:0016556: mRNA modification2.03E-03
75GO:1902476: chloride transmembrane transport2.03E-03
76GO:0010071: root meristem specification2.03E-03
77GO:0051513: regulation of monopolar cell growth2.03E-03
78GO:0051085: chaperone mediated protein folding requiring cofactor2.03E-03
79GO:0009152: purine ribonucleotide biosynthetic process2.03E-03
80GO:0006418: tRNA aminoacylation for protein translation2.38E-03
81GO:0051302: regulation of cell division2.38E-03
82GO:0016998: cell wall macromolecule catabolic process2.62E-03
83GO:0044205: 'de novo' UMP biosynthetic process2.73E-03
84GO:0051567: histone H3-K9 methylation2.73E-03
85GO:0015713: phosphoglycerate transport2.73E-03
86GO:0044206: UMP salvage2.73E-03
87GO:0010021: amylopectin biosynthetic process2.73E-03
88GO:0051322: anaphase2.73E-03
89GO:0030104: water homeostasis2.73E-03
90GO:0007005: mitochondrion organization2.87E-03
91GO:0042546: cell wall biogenesis2.91E-03
92GO:0010236: plastoquinone biosynthetic process3.49E-03
93GO:0010158: abaxial cell fate specification3.49E-03
94GO:0016131: brassinosteroid metabolic process3.49E-03
95GO:0016458: gene silencing4.32E-03
96GO:0006206: pyrimidine nucleobase metabolic process4.32E-03
97GO:0018258: protein O-linked glycosylation via hydroxyproline4.32E-03
98GO:0009228: thiamine biosynthetic process4.32E-03
99GO:0010405: arabinogalactan protein metabolic process4.32E-03
100GO:0009959: negative gravitropism4.32E-03
101GO:0006655: phosphatidylglycerol biosynthetic process4.32E-03
102GO:0009646: response to absence of light4.62E-03
103GO:0009851: auxin biosynthetic process4.96E-03
104GO:0009082: branched-chain amino acid biosynthetic process5.20E-03
105GO:0006458: 'de novo' protein folding5.20E-03
106GO:0017148: negative regulation of translation5.20E-03
107GO:0009942: longitudinal axis specification5.20E-03
108GO:0009099: valine biosynthetic process5.20E-03
109GO:0030488: tRNA methylation5.20E-03
110GO:2000067: regulation of root morphogenesis5.20E-03
111GO:0009955: adaxial/abaxial pattern specification5.20E-03
112GO:0042372: phylloquinone biosynthetic process5.20E-03
113GO:0042254: ribosome biogenesis5.59E-03
114GO:0010583: response to cyclopentenone5.67E-03
115GO:0070370: cellular heat acclimation6.15E-03
116GO:0010050: vegetative phase change6.15E-03
117GO:0010444: guard mother cell differentiation6.15E-03
118GO:0006400: tRNA modification6.15E-03
119GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.15E-03
120GO:0010103: stomatal complex morphogenesis6.15E-03
121GO:0006955: immune response6.15E-03
122GO:0048528: post-embryonic root development6.15E-03
123GO:0009772: photosynthetic electron transport in photosystem II6.15E-03
124GO:0006821: chloride transport6.15E-03
125GO:0009742: brassinosteroid mediated signaling pathway6.85E-03
126GO:0009850: auxin metabolic process7.15E-03
127GO:0009704: de-etiolation7.15E-03
128GO:0042255: ribosome assembly7.15E-03
129GO:0070413: trehalose metabolism in response to stress7.15E-03
130GO:0055075: potassium ion homeostasis7.15E-03
131GO:0009231: riboflavin biosynthetic process7.15E-03
132GO:0048564: photosystem I assembly7.15E-03
133GO:0001522: pseudouridine synthesis7.15E-03
134GO:0006508: proteolysis7.81E-03
135GO:0009827: plant-type cell wall modification8.21E-03
136GO:0010052: guard cell differentiation8.21E-03
137GO:0009097: isoleucine biosynthetic process8.21E-03
138GO:0010497: plasmodesmata-mediated intercellular transport8.21E-03
139GO:0007389: pattern specification process8.21E-03
140GO:0009932: cell tip growth8.21E-03
141GO:0071482: cellular response to light stimulus8.21E-03
142GO:0001558: regulation of cell growth8.21E-03
143GO:0006098: pentose-phosphate shunt9.31E-03
144GO:0000373: Group II intron splicing9.31E-03
145GO:0000902: cell morphogenesis9.31E-03
146GO:0009416: response to light stimulus1.01E-02
147GO:0048481: plant ovule development1.01E-02
148GO:0009098: leucine biosynthetic process1.05E-02
149GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.05E-02
150GO:0031425: chloroplast RNA processing1.05E-02
151GO:0009638: phototropism1.05E-02
152GO:2000280: regulation of root development1.05E-02
153GO:0006535: cysteine biosynthetic process from serine1.17E-02
154GO:0009688: abscisic acid biosynthetic process1.17E-02
155GO:0030422: production of siRNA involved in RNA interference1.17E-02
156GO:0045036: protein targeting to chloroplast1.17E-02
157GO:0009641: shade avoidance1.17E-02
158GO:0006298: mismatch repair1.17E-02
159GO:0006259: DNA metabolic process1.17E-02
160GO:0006265: DNA topological change1.29E-02
161GO:0009089: lysine biosynthetic process via diaminopimelate1.29E-02
162GO:0006352: DNA-templated transcription, initiation1.29E-02
163GO:0018119: peptidyl-cysteine S-nitrosylation1.29E-02
164GO:0048229: gametophyte development1.29E-02
165GO:0010015: root morphogenesis1.29E-02
166GO:0016024: CDP-diacylglycerol biosynthetic process1.43E-02
167GO:0045037: protein import into chloroplast stroma1.43E-02
168GO:0010582: floral meristem determinacy1.43E-02
169GO:0009785: blue light signaling pathway1.56E-02
170GO:0050826: response to freezing1.56E-02
171GO:0010075: regulation of meristem growth1.56E-02
172GO:0006094: gluconeogenesis1.56E-02
173GO:0009767: photosynthetic electron transport chain1.56E-02
174GO:0010114: response to red light1.65E-02
175GO:0010207: photosystem II assembly1.70E-02
176GO:0009934: regulation of meristem structural organization1.70E-02
177GO:0090351: seedling development1.84E-02
178GO:0070588: calcium ion transmembrane transport1.84E-02
179GO:0006833: water transport1.99E-02
180GO:0009826: unidimensional cell growth2.12E-02
181GO:0000027: ribosomal large subunit assembly2.14E-02
182GO:0005992: trehalose biosynthetic process2.14E-02
183GO:0019344: cysteine biosynthetic process2.14E-02
184GO:0009116: nucleoside metabolic process2.14E-02
185GO:0009944: polarity specification of adaxial/abaxial axis2.14E-02
186GO:0006364: rRNA processing2.23E-02
187GO:0009734: auxin-activated signaling pathway2.27E-02
188GO:0006825: copper ion transport2.30E-02
189GO:0019953: sexual reproduction2.30E-02
190GO:0051603: proteolysis involved in cellular protein catabolic process2.31E-02
191GO:0006306: DNA methylation2.46E-02
192GO:0015992: proton transport2.46E-02
193GO:0061077: chaperone-mediated protein folding2.46E-02
194GO:0006417: regulation of translation2.47E-02
195GO:0006730: one-carbon metabolic process2.63E-02
196GO:0048316: seed development2.73E-02
197GO:0048367: shoot system development2.73E-02
198GO:0010082: regulation of root meristem growth2.79E-02
199GO:0001944: vasculature development2.79E-02
200GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.79E-02
201GO:0080167: response to karrikin2.91E-02
202GO:0042127: regulation of cell proliferation2.96E-02
203GO:0009553: embryo sac development3.08E-02
204GO:0000226: microtubule cytoskeleton organization3.32E-02
205GO:0008033: tRNA processing3.32E-02
206GO:0048653: anther development3.32E-02
207GO:0006662: glycerol ether metabolic process3.50E-02
208GO:0010305: leaf vascular tissue pattern formation3.50E-02
209GO:0048868: pollen tube development3.50E-02
210GO:0006342: chromatin silencing3.50E-02
211GO:0009741: response to brassinosteroid3.50E-02
212GO:0006468: protein phosphorylation3.54E-02
213GO:0006814: sodium ion transport3.69E-02
214GO:0007059: chromosome segregation3.69E-02
215GO:0019252: starch biosynthetic process3.87E-02
216GO:0008654: phospholipid biosynthetic process3.87E-02
217GO:0000302: response to reactive oxygen species4.07E-02
218GO:0016132: brassinosteroid biosynthetic process4.07E-02
219GO:0016567: protein ubiquitination4.21E-02
220GO:0009630: gravitropism4.26E-02
221GO:0010252: auxin homeostasis4.66E-02
222GO:0071805: potassium ion transmembrane transport4.86E-02
223GO:0048364: root development4.95E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004056: argininosuccinate lyase activity0.00E+00
6GO:0004019: adenylosuccinate synthase activity0.00E+00
7GO:0003937: IMP cyclohydrolase activity0.00E+00
8GO:0004519: endonuclease activity9.44E-07
9GO:0003723: RNA binding3.16E-06
10GO:0019843: rRNA binding4.56E-05
11GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.55E-04
12GO:0004176: ATP-dependent peptidase activity2.63E-04
13GO:0042834: peptidoglycan binding3.99E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity3.99E-04
15GO:0004813: alanine-tRNA ligase activity3.99E-04
16GO:0004008: copper-exporting ATPase activity3.99E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.99E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.99E-04
19GO:0004830: tryptophan-tRNA ligase activity3.99E-04
20GO:0010285: L,L-diaminopimelate aminotransferase activity3.99E-04
21GO:0004160: dihydroxy-acid dehydratase activity3.99E-04
22GO:0005227: calcium activated cation channel activity3.99E-04
23GO:0043621: protein self-association5.06E-04
24GO:0016762: xyloglucan:xyloglucosyl transferase activity6.67E-04
25GO:0005525: GTP binding8.23E-04
26GO:0019156: isoamylase activity8.66E-04
27GO:0003919: FMN adenylyltransferase activity8.66E-04
28GO:0003852: 2-isopropylmalate synthase activity8.66E-04
29GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.66E-04
30GO:0008237: metallopeptidase activity9.17E-04
31GO:0044183: protein binding involved in protein folding1.07E-03
32GO:0016798: hydrolase activity, acting on glycosyl bonds1.30E-03
33GO:0070330: aromatase activity1.40E-03
34GO:0017150: tRNA dihydrouridine synthase activity1.40E-03
35GO:0042781: 3'-tRNA processing endoribonuclease activity1.40E-03
36GO:0071917: triose-phosphate transmembrane transporter activity1.40E-03
37GO:0046524: sucrose-phosphate synthase activity1.40E-03
38GO:0004222: metalloendopeptidase activity1.68E-03
39GO:0003746: translation elongation factor activity2.00E-03
40GO:0009678: hydrogen-translocating pyrophosphatase activity2.03E-03
41GO:0035197: siRNA binding2.03E-03
42GO:0043023: ribosomal large subunit binding2.03E-03
43GO:0008508: bile acid:sodium symporter activity2.03E-03
44GO:0016987: sigma factor activity2.73E-03
45GO:0004031: aldehyde oxidase activity2.73E-03
46GO:0050302: indole-3-acetaldehyde oxidase activity2.73E-03
47GO:0005253: anion channel activity2.73E-03
48GO:0019199: transmembrane receptor protein kinase activity2.73E-03
49GO:0042277: peptide binding2.73E-03
50GO:0015120: phosphoglycerate transmembrane transporter activity2.73E-03
51GO:0004659: prenyltransferase activity2.73E-03
52GO:0016279: protein-lysine N-methyltransferase activity2.73E-03
53GO:0001053: plastid sigma factor activity2.73E-03
54GO:0004845: uracil phosphoribosyltransferase activity2.73E-03
55GO:0016836: hydro-lyase activity2.73E-03
56GO:0005275: amine transmembrane transporter activity3.49E-03
57GO:0018685: alkane 1-monooxygenase activity3.49E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor3.49E-03
59GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.49E-03
60GO:0004812: aminoacyl-tRNA ligase activity3.69E-03
61GO:0004556: alpha-amylase activity4.32E-03
62GO:0005247: voltage-gated chloride channel activity4.32E-03
63GO:0030983: mismatched DNA binding4.32E-03
64GO:0004605: phosphatidate cytidylyltransferase activity4.32E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity4.32E-03
66GO:0004332: fructose-bisphosphate aldolase activity4.32E-03
67GO:0004849: uridine kinase activity5.20E-03
68GO:0004124: cysteine synthase activity5.20E-03
69GO:0008195: phosphatidate phosphatase activity5.20E-03
70GO:0004427: inorganic diphosphatase activity6.15E-03
71GO:0050660: flavin adenine dinucleotide binding6.78E-03
72GO:0003735: structural constituent of ribosome6.92E-03
73GO:0043022: ribosome binding7.15E-03
74GO:0016597: amino acid binding7.26E-03
75GO:0016887: ATPase activity7.94E-03
76GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.21E-03
77GO:0005375: copper ion transmembrane transporter activity8.21E-03
78GO:0009672: auxin:proton symporter activity1.05E-02
79GO:0004805: trehalose-phosphatase activity1.17E-02
80GO:0005524: ATP binding1.23E-02
81GO:0003924: GTPase activity1.36E-02
82GO:0000049: tRNA binding1.43E-02
83GO:0004521: endoribonuclease activity1.43E-02
84GO:0051539: 4 iron, 4 sulfur cluster binding1.46E-02
85GO:0009055: electron carrier activity1.51E-02
86GO:0004565: beta-galactosidase activity1.56E-02
87GO:0010329: auxin efflux transmembrane transporter activity1.56E-02
88GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.56E-02
89GO:0005262: calcium channel activity1.56E-02
90GO:0019888: protein phosphatase regulator activity1.56E-02
91GO:0009982: pseudouridine synthase activity1.56E-02
92GO:0004185: serine-type carboxypeptidase activity1.65E-02
93GO:0015079: potassium ion transmembrane transporter activity2.30E-02
94GO:0005345: purine nucleobase transmembrane transporter activity2.30E-02
95GO:0033612: receptor serine/threonine kinase binding2.46E-02
96GO:0008408: 3'-5' exonuclease activity2.46E-02
97GO:0003727: single-stranded RNA binding2.96E-02
98GO:0047134: protein-disulfide reductase activity3.14E-02
99GO:0051082: unfolded protein binding3.18E-02
100GO:0004527: exonuclease activity3.50E-02
101GO:0003713: transcription coactivator activity3.50E-02
102GO:0008536: Ran GTPase binding3.50E-02
103GO:0050662: coenzyme binding3.69E-02
104GO:0004791: thioredoxin-disulfide reductase activity3.69E-02
105GO:0005355: glucose transmembrane transporter activity3.69E-02
106GO:0019901: protein kinase binding3.87E-02
107GO:0016829: lyase activity4.29E-02
108GO:0000156: phosphorelay response regulator activity4.46E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.46E-02
110GO:0003684: damaged DNA binding4.66E-02
111GO:0016791: phosphatase activity4.66E-02
112GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.76E-02
113GO:0008483: transaminase activity4.86E-02
114GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.86E-02
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Gene type



Gene DE type