co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	5.70E-11
10	GO:0055114: oxidation-reduction process	4.14E-07
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.18E-07
12	GO:0010207: photosystem II assembly	8.29E-06
13	GO:0006783: heme biosynthetic process	4.82E-05
14	GO:2001141: regulation of RNA biosynthetic process	7.39E-05
15	GO:0006782: protoporphyrinogen IX biosynthetic process	8.15E-05
16	GO:0010021: amylopectin biosynthetic process	1.29E-04
17	GO:0006633: fatty acid biosynthetic process	1.55E-04
18	GO:0010027: thylakoid membrane organization	2.00E-04
19	GO:0042549: photosystem II stabilization	2.80E-04
20	GO:0046167: glycerol-3-phosphate biosynthetic process	4.78E-04
21	GO:1902458: positive regulation of stomatal opening	4.78E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	4.78E-04
23	GO:0015969: guanosine tetraphosphate metabolic process	4.78E-04
24	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	4.78E-04
25	GO:0015671: oxygen transport	4.78E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	4.78E-04
27	GO:0043953: protein transport by the Tat complex	4.78E-04
28	GO:0000481: maturation of 5S rRNA	4.78E-04
29	GO:0015801: aromatic amino acid transport	4.78E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	4.78E-04
31	GO:0065002: intracellular protein transmembrane transport	4.78E-04
32	GO:0043686: co-translational protein modification	4.78E-04
33	GO:0043087: regulation of GTPase activity	4.78E-04
34	GO:0009395: phospholipid catabolic process	4.82E-04
35	GO:0016559: peroxisome fission	6.01E-04
36	GO:0048564: photosystem I assembly	6.01E-04
37	GO:0071482: cellular response to light stimulus	7.33E-04
38	GO:0019252: starch biosynthetic process	8.59E-04
39	GO:0015979: photosynthesis	9.95E-04
40	GO:0010155: regulation of proton transport	1.03E-03
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.03E-03
42	GO:0051262: protein tetramerization	1.03E-03
43	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.03E-03
44	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-03
45	GO:0035304: regulation of protein dephosphorylation	1.03E-03
46	GO:0010115: regulation of abscisic acid biosynthetic process	1.03E-03
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.03E-03
48	GO:0006432: phenylalanyl-tRNA aminoacylation	1.03E-03
49	GO:0000256: allantoin catabolic process	1.03E-03
50	GO:0006435: threonyl-tRNA aminoacylation	1.03E-03
51	GO:0006650: glycerophospholipid metabolic process	1.03E-03
52	GO:0009735: response to cytokinin	1.30E-03
53	GO:0019684: photosynthesis, light reaction	1.39E-03
54	GO:0009089: lysine biosynthetic process via diaminopimelate	1.39E-03
55	GO:0009773: photosynthetic electron transport in photosystem I	1.39E-03
56	GO:0006352: DNA-templated transcription, initiation	1.39E-03
57	GO:0016024: CDP-diacylglycerol biosynthetic process	1.59E-03
58	GO:0005977: glycogen metabolic process	1.68E-03
59	GO:0046168: glycerol-3-phosphate catabolic process	1.68E-03
60	GO:0010136: ureide catabolic process	1.68E-03
61	GO:0034051: negative regulation of plant-type hypersensitive response	1.68E-03
62	GO:0044375: regulation of peroxisome size	1.68E-03
63	GO:0010143: cutin biosynthetic process	2.04E-03
64	GO:0009658: chloroplast organization	2.05E-03
65	GO:0009817: defense response to fungus, incompatible interaction	2.09E-03
66	GO:0010371: regulation of gibberellin biosynthetic process	2.44E-03
67	GO:0009102: biotin biosynthetic process	2.44E-03
68	GO:0009152: purine ribonucleotide biosynthetic process	2.44E-03
69	GO:0046653: tetrahydrofolate metabolic process	2.44E-03
70	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.44E-03
71	GO:0033014: tetrapyrrole biosynthetic process	2.44E-03
72	GO:0006072: glycerol-3-phosphate metabolic process	2.44E-03
73	GO:0006424: glutamyl-tRNA aminoacylation	2.44E-03
74	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.44E-03
75	GO:0006145: purine nucleobase catabolic process	2.44E-03
76	GO:1901332: negative regulation of lateral root development	2.44E-03
77	GO:0019464: glycine decarboxylation via glycine cleavage system	3.28E-03
78	GO:0009765: photosynthesis, light harvesting	3.28E-03
79	GO:0006546: glycine catabolic process	3.28E-03
80	GO:0006631: fatty acid metabolic process	3.53E-03
81	GO:0031365: N-terminal protein amino acid modification	4.21E-03
82	GO:0016123: xanthophyll biosynthetic process	4.21E-03
83	GO:0000304: response to singlet oxygen	4.21E-03
84	GO:0080110: sporopollenin biosynthetic process	4.21E-03
85	GO:0046907: intracellular transport	4.21E-03
86	GO:0032543: mitochondrial translation	4.21E-03
87	GO:0016120: carotene biosynthetic process	4.21E-03
88	GO:0006564: L-serine biosynthetic process	4.21E-03
89	GO:0009904: chloroplast accumulation movement	4.21E-03
90	GO:0045038: protein import into chloroplast thylakoid membrane	4.21E-03
91	GO:0006655: phosphatidylglycerol biosynthetic process	5.21E-03
92	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.21E-03
93	GO:0006014: D-ribose metabolic process	5.21E-03
94	GO:1901259: chloroplast rRNA processing	6.28E-03
95	GO:0009903: chloroplast avoidance movement	6.28E-03
96	GO:0030488: tRNA methylation	6.28E-03
97	GO:0006400: tRNA modification	7.43E-03
98	GO:0005978: glycogen biosynthetic process	8.65E-03
99	GO:0006605: protein targeting	8.65E-03
100	GO:0032508: DNA duplex unwinding	8.65E-03
101	GO:0042255: ribosome assembly	8.65E-03
102	GO:0006353: DNA-templated transcription, termination	8.65E-03
103	GO:2000070: regulation of response to water deprivation	8.65E-03
104	GO:0017004: cytochrome complex assembly	9.94E-03
105	GO:0022900: electron transport chain	9.94E-03
106	GO:0015996: chlorophyll catabolic process	9.94E-03
107	GO:0007186: G-protein coupled receptor signaling pathway	9.94E-03
108	GO:0006526: arginine biosynthetic process	9.94E-03
109	GO:0032544: plastid translation	9.94E-03
110	GO:0009821: alkaloid biosynthetic process	1.13E-02
111	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.13E-02
112	GO:0006098: pentose-phosphate shunt	1.13E-02
113	GO:0010206: photosystem II repair	1.13E-02
114	GO:0019432: triglyceride biosynthetic process	1.13E-02
115	GO:0005982: starch metabolic process	1.27E-02
116	GO:0010205: photoinhibition	1.27E-02
117	GO:0009638: phototropism	1.27E-02
118	GO:1900865: chloroplast RNA modification	1.27E-02
119	GO:0044550: secondary metabolite biosynthetic process	1.29E-02
120	GO:0018298: protein-chromophore linkage	1.32E-02
121	GO:0006535: cysteine biosynthetic process from serine	1.42E-02
122	GO:0043069: negative regulation of programmed cell death	1.42E-02
123	GO:0008285: negative regulation of cell proliferation	1.57E-02
124	GO:0006810: transport	1.68E-02
125	GO:0045037: protein import into chloroplast stroma	1.73E-02
126	GO:0005975: carbohydrate metabolic process	1.79E-02
127	GO:0009718: anthocyanin-containing compound biosynthetic process	1.90E-02
128	GO:0009725: response to hormone	1.90E-02
129	GO:0006094: gluconeogenesis	1.90E-02
130	GO:0009767: photosynthetic electron transport chain	1.90E-02
131	GO:0009785: blue light signaling pathway	1.90E-02
132	GO:0009266: response to temperature stimulus	2.07E-02
133	GO:0010020: chloroplast fission	2.07E-02
134	GO:0007031: peroxisome organization	2.24E-02
135	GO:0042343: indole glucosinolate metabolic process	2.24E-02
136	GO:0006833: water transport	2.42E-02
137	GO:0006636: unsaturated fatty acid biosynthetic process	2.42E-02
138	GO:0019344: cysteine biosynthetic process	2.61E-02
139	GO:0006289: nucleotide-excision repair	2.61E-02
140	GO:0006412: translation	2.64E-02
141	GO:0010073: meristem maintenance	2.80E-02
142	GO:0006418: tRNA aminoacylation for protein translation	2.80E-02
143	GO:0007017: microtubule-based process	2.80E-02
144	GO:0048511: rhythmic process	2.99E-02
145	GO:0098542: defense response to other organism	2.99E-02
146	GO:0010431: seed maturation	2.99E-02
147	GO:0061077: chaperone-mediated protein folding	2.99E-02
148	GO:0031408: oxylipin biosynthetic process	2.99E-02
149	GO:0003333: amino acid transmembrane transport	2.99E-02
150	GO:0016998: cell wall macromolecule catabolic process	2.99E-02
151	GO:0080092: regulation of pollen tube growth	3.19E-02
152	GO:0019748: secondary metabolic process	3.19E-02
153	GO:0016226: iron-sulfur cluster assembly	3.19E-02
154	GO:0035428: hexose transmembrane transport	3.19E-02
155	GO:0042254: ribosome biogenesis	3.20E-02
156	GO:0010227: floral organ abscission	3.40E-02
157	GO:0006096: glycolytic process	3.47E-02
158	GO:0043086: negative regulation of catalytic activity	3.47E-02
159	GO:0010584: pollen exine formation	3.60E-02
160	GO:0019722: calcium-mediated signaling	3.60E-02
161	GO:0009306: protein secretion	3.60E-02
162	GO:0016117: carotenoid biosynthetic process	3.82E-02
163	GO:0051028: mRNA transport	3.82E-02
164	GO:0042335: cuticle development	4.03E-02
165	GO:0034220: ion transmembrane transport	4.03E-02
166	GO:0010182: sugar mediated signaling pathway	4.25E-02
167	GO:0046323: glucose import	4.25E-02
168	GO:0006520: cellular amino acid metabolic process	4.25E-02
169	GO:0007018: microtubule-based movement	4.48E-02
170	GO:0042752: regulation of circadian rhythm	4.48E-02
171	GO:0010183: pollen tube guidance	4.71E-02
172	GO:0008654: phospholipid biosynthetic process	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0036033: mediator complex binding	0.00E+00
4	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
10	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
11	GO:0050613: delta14-sterol reductase activity	0.00E+00
12	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
13	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
14	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
15	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
16	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
17	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
18	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
19	GO:0016851: magnesium chelatase activity	5.18E-07
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.49E-06
21	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.01E-05
22	GO:0016491: oxidoreductase activity	1.29E-05
23	GO:0003993: acid phosphatase activity	6.00E-05
24	GO:0019843: rRNA binding	9.00E-05
25	GO:0048038: quinone binding	1.03E-04
26	GO:0001053: plastid sigma factor activity	1.29E-04
27	GO:0016987: sigma factor activity	1.29E-04
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.32E-04
29	GO:0008266: poly(U) RNA binding	1.82E-04
30	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.80E-04
31	GO:0005528: FK506 binding	2.90E-04
32	GO:0005344: oxygen transporter activity	4.78E-04
33	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.78E-04
34	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	4.78E-04
35	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.78E-04
36	GO:0005227: calcium activated cation channel activity	4.78E-04
37	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.78E-04
38	GO:0004856: xylulokinase activity	4.78E-04
39	GO:0009496: plastoquinol--plastocyanin reductase activity	4.78E-04
40	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.78E-04
41	GO:0080132: fatty acid alpha-hydroxylase activity	4.78E-04
42	GO:0010242: oxygen evolving activity	4.78E-04
43	GO:0005080: protein kinase C binding	4.78E-04
44	GO:0004325: ferrochelatase activity	4.78E-04
45	GO:0042586: peptide deformylase activity	4.78E-04
46	GO:0016788: hydrolase activity, acting on ester bonds	5.15E-04
47	GO:0051287: NAD binding	9.08E-04
48	GO:0042389: omega-3 fatty acid desaturase activity	1.03E-03
49	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.03E-03
50	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.03E-03
51	GO:0004617: phosphoglycerate dehydrogenase activity	1.03E-03
52	GO:0015173: aromatic amino acid transmembrane transporter activity	1.03E-03
53	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.03E-03
54	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	1.03E-03
55	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	1.03E-03
56	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.03E-03
57	GO:0004829: threonine-tRNA ligase activity	1.03E-03
58	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.03E-03
59	GO:0019156: isoamylase activity	1.03E-03
60	GO:0004826: phenylalanine-tRNA ligase activity	1.03E-03
61	GO:0008728: GTP diphosphokinase activity	1.03E-03
62	GO:0050017: L-3-cyanoalanine synthase activity	1.03E-03
63	GO:0000049: tRNA binding	1.59E-03
64	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.68E-03
65	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.68E-03
66	GO:0070402: NADPH binding	1.68E-03
67	GO:0008864: formyltetrahydrofolate deformylase activity	1.68E-03
68	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.68E-03
69	GO:0004180: carboxypeptidase activity	1.68E-03
70	GO:0043169: cation binding	1.68E-03
71	GO:0005504: fatty acid binding	1.68E-03
72	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.68E-03
73	GO:0002161: aminoacyl-tRNA editing activity	1.68E-03
74	GO:0004148: dihydrolipoyl dehydrogenase activity	1.68E-03
75	GO:0004751: ribose-5-phosphate isomerase activity	1.68E-03
76	GO:0030267: glyoxylate reductase (NADP) activity	1.68E-03
77	GO:0043023: ribosomal large subunit binding	2.44E-03
78	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.44E-03
79	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.44E-03
80	GO:0009882: blue light photoreceptor activity	2.44E-03
81	GO:0070628: proteasome binding	3.28E-03
82	GO:0045430: chalcone isomerase activity	3.28E-03
83	GO:0043495: protein anchor	3.28E-03
84	GO:0005275: amine transmembrane transporter activity	4.21E-03
85	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.21E-03
86	GO:0051537: 2 iron, 2 sulfur cluster binding	4.33E-03
87	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.21E-03
88	GO:0004332: fructose-bisphosphate aldolase activity	5.21E-03
89	GO:0031593: polyubiquitin binding	5.21E-03
90	GO:0004556: alpha-amylase activity	5.21E-03
91	GO:0000293: ferric-chelate reductase activity	5.21E-03
92	GO:0042802: identical protein binding	6.09E-03
93	GO:0004124: cysteine synthase activity	6.28E-03
94	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.28E-03
95	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.28E-03
96	GO:0004747: ribokinase activity	6.28E-03
97	GO:0005261: cation channel activity	6.28E-03
98	GO:0003729: mRNA binding	6.67E-03
99	GO:0019899: enzyme binding	7.43E-03
100	GO:0008865: fructokinase activity	8.65E-03
101	GO:0003723: RNA binding	9.29E-03
102	GO:0008173: RNA methyltransferase activity	9.94E-03
103	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.94E-03
104	GO:0071949: FAD binding	1.13E-02
105	GO:0008236: serine-type peptidase activity	1.26E-02
106	GO:0030955: potassium ion binding	1.27E-02
107	GO:0016844: strictosidine synthase activity	1.27E-02
108	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.27E-02
109	GO:0004743: pyruvate kinase activity	1.27E-02
110	GO:0003735: structural constituent of ribosome	1.31E-02
111	GO:0016787: hydrolase activity	1.55E-02
112	GO:0047372: acylglycerol lipase activity	1.57E-02
113	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.57E-02
114	GO:0003746: translation elongation factor activity	1.68E-02
115	GO:0005509: calcium ion binding	1.74E-02
116	GO:0031072: heat shock protein binding	1.90E-02
117	GO:0000155: phosphorelay sensor kinase activity	1.90E-02
118	GO:0004565: beta-galactosidase activity	1.90E-02
119	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.07E-02
120	GO:0004185: serine-type carboxypeptidase activity	2.17E-02
121	GO:0016740: transferase activity	2.26E-02
122	GO:0035091: phosphatidylinositol binding	2.35E-02
123	GO:0051536: iron-sulfur cluster binding	2.61E-02
124	GO:0004857: enzyme inhibitor activity	2.61E-02
125	GO:0043130: ubiquitin binding	2.61E-02
126	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.93E-02
127	GO:0022891: substrate-specific transmembrane transporter activity	3.40E-02
128	GO:0030570: pectate lyase activity	3.40E-02
129	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.58E-02
130	GO:0003727: single-stranded RNA binding	3.60E-02
131	GO:0003756: protein disulfide isomerase activity	3.60E-02
132	GO:0005525: GTP binding	3.72E-02
133	GO:0004812: aminoacyl-tRNA ligase activity	3.82E-02
134	GO:0016887: ATPase activity	3.90E-02
135	GO:0008080: N-acetyltransferase activity	4.25E-02
136	GO:0005355: glucose transmembrane transporter activity	4.48E-02
137	GO:0050662: coenzyme binding	4.48E-02
138	GO:0010181: FMN binding	4.48E-02
139	GO:0052689: carboxylic ester hydrolase activity	4.61E-02
140	GO:0004872: receptor activity	4.71E-02