co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
2	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0035884: arabinan biosynthetic process	0.00E+00
5	GO:0009606: tropism	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
9	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0031222: arabinan catabolic process	0.00E+00
12	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
13	GO:0042793: transcription from plastid promoter	3.93E-08
14	GO:0046620: regulation of organ growth	3.06E-07
15	GO:0009451: RNA modification	2.05E-05
16	GO:0009734: auxin-activated signaling pathway	3.67E-05
17	GO:0009658: chloroplast organization	6.94E-05
18	GO:0009926: auxin polar transport	7.26E-05
19	GO:2000038: regulation of stomatal complex development	1.12E-04
20	GO:0048437: floral organ development	4.25E-04
21	GO:0090558: plant epidermis development	4.40E-04
22	GO:1903866: palisade mesophyll development	4.40E-04
23	GO:0010063: positive regulation of trichoblast fate specification	4.40E-04
24	GO:0010480: microsporocyte differentiation	4.40E-04
25	GO:0035987: endodermal cell differentiation	4.40E-04
26	GO:0006436: tryptophanyl-tRNA aminoacylation	4.40E-04
27	GO:0015904: tetracycline transport	4.40E-04
28	GO:0034757: negative regulation of iron ion transport	4.40E-04
29	GO:0042659: regulation of cell fate specification	4.40E-04
30	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.40E-04
31	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.40E-04
32	GO:0009657: plastid organization	6.48E-04
33	GO:0007389: pattern specification process	6.48E-04
34	GO:0040008: regulation of growth	7.02E-04
35	GO:0000373: Group II intron splicing	7.77E-04
36	GO:0000902: cell morphogenesis	7.77E-04
37	GO:0009733: response to auxin	8.66E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.50E-04
39	GO:0010569: regulation of double-strand break repair via homologous recombination	9.50E-04
40	GO:0070981: L-asparagine biosynthetic process	9.50E-04
41	GO:0010271: regulation of chlorophyll catabolic process	9.50E-04
42	GO:0018026: peptidyl-lysine monomethylation	9.50E-04
43	GO:0009662: etioplast organization	9.50E-04
44	GO:1900033: negative regulation of trichome patterning	9.50E-04
45	GO:1904143: positive regulation of carotenoid biosynthetic process	9.50E-04
46	GO:0080009: mRNA methylation	9.50E-04
47	GO:0006529: asparagine biosynthetic process	9.50E-04
48	GO:2000123: positive regulation of stomatal complex development	9.50E-04
49	GO:0010252: auxin homeostasis	1.02E-03
50	GO:0009416: response to light stimulus	1.20E-03
51	GO:0045037: protein import into chloroplast stroma	1.40E-03
52	GO:0080117: secondary growth	1.55E-03
53	GO:0090391: granum assembly	1.55E-03
54	GO:0042780: tRNA 3'-end processing	1.55E-03
55	GO:0001578: microtubule bundle formation	1.55E-03
56	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.55E-03
57	GO:0045910: negative regulation of DNA recombination	1.55E-03
58	GO:0090708: specification of plant organ axis polarity	1.55E-03
59	GO:0048481: plant ovule development	1.78E-03
60	GO:0010306: rhamnogalacturonan II biosynthetic process	2.24E-03
61	GO:0046739: transport of virus in multicellular host	2.24E-03
62	GO:0016556: mRNA modification	2.24E-03
63	GO:0051289: protein homotetramerization	2.24E-03
64	GO:1902476: chloride transmembrane transport	2.24E-03
65	GO:0010071: root meristem specification	2.24E-03
66	GO:0051513: regulation of monopolar cell growth	2.24E-03
67	GO:0010239: chloroplast mRNA processing	2.24E-03
68	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.55E-03
69	GO:0030104: water homeostasis	3.01E-03
70	GO:0006021: inositol biosynthetic process	3.01E-03
71	GO:0006346: methylation-dependent chromatin silencing	3.01E-03
72	GO:0048629: trichome patterning	3.01E-03
73	GO:0042274: ribosomal small subunit biogenesis	3.01E-03
74	GO:0051322: anaphase	3.01E-03
75	GO:0016998: cell wall macromolecule catabolic process	3.03E-03
76	GO:0010082: regulation of root meristem growth	3.61E-03
77	GO:0048497: maintenance of floral organ identity	3.85E-03
78	GO:0032876: negative regulation of DNA endoreduplication	3.85E-03
79	GO:0030308: negative regulation of cell growth	3.85E-03
80	GO:0010375: stomatal complex patterning	3.85E-03
81	GO:0009913: epidermal cell differentiation	4.77E-03
82	GO:0006655: phosphatidylglycerol biosynthetic process	4.77E-03
83	GO:0010315: auxin efflux	4.77E-03
84	GO:1902456: regulation of stomatal opening	4.77E-03
85	GO:0048831: regulation of shoot system development	4.77E-03
86	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.77E-03
87	GO:0009228: thiamine biosynthetic process	4.77E-03
88	GO:0010405: arabinogalactan protein metabolic process	4.77E-03
89	GO:0016554: cytidine to uridine editing	4.77E-03
90	GO:0048868: pollen tube development	4.97E-03
91	GO:0009741: response to brassinosteroid	4.97E-03
92	GO:0009646: response to absence of light	5.34E-03
93	GO:0010067: procambium histogenesis	5.75E-03
94	GO:1901259: chloroplast rRNA processing	5.75E-03
95	GO:0009942: longitudinal axis specification	5.75E-03
96	GO:0048509: regulation of meristem development	5.75E-03
97	GO:0030488: tRNA methylation	5.75E-03
98	GO:2000037: regulation of stomatal complex patterning	5.75E-03
99	GO:2000067: regulation of root morphogenesis	5.75E-03
100	GO:0009955: adaxial/abaxial pattern specification	5.75E-03
101	GO:0080156: mitochondrial mRNA modification	6.14E-03
102	GO:0010583: response to cyclopentenone	6.56E-03
103	GO:0032502: developmental process	6.56E-03
104	GO:0006821: chloride transport	6.80E-03
105	GO:0010103: stomatal complex morphogenesis	6.80E-03
106	GO:0006955: immune response	6.80E-03
107	GO:0007050: cell cycle arrest	6.80E-03
108	GO:0009828: plant-type cell wall loosening	7.45E-03
109	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.91E-03
110	GO:0001522: pseudouridine synthesis	7.91E-03
111	GO:0048766: root hair initiation	7.91E-03
112	GO:0055075: potassium ion homeostasis	7.91E-03
113	GO:0000105: histidine biosynthetic process	7.91E-03
114	GO:0006102: isocitrate metabolic process	7.91E-03
115	GO:0009742: brassinosteroid mediated signaling pathway	8.24E-03
116	GO:0010027: thylakoid membrane organization	8.90E-03
117	GO:0010497: plasmodesmata-mediated intercellular transport	9.09E-03
118	GO:0032544: plastid translation	9.09E-03
119	GO:0009827: plant-type cell wall modification	9.09E-03
120	GO:0006974: cellular response to DNA damage stimulus	9.96E-03
121	GO:0042761: very long-chain fatty acid biosynthetic process	1.16E-02
122	GO:1900865: chloroplast RNA modification	1.16E-02
123	GO:2000280: regulation of root development	1.16E-02
124	GO:0031425: chloroplast RNA processing	1.16E-02
125	GO:0009638: phototropism	1.16E-02
126	GO:0000160: phosphorelay signal transduction system	1.22E-02
127	GO:0009790: embryo development	1.24E-02
128	GO:0006535: cysteine biosynthetic process from serine	1.30E-02
129	GO:0048829: root cap development	1.30E-02
130	GO:0045036: protein targeting to chloroplast	1.30E-02
131	GO:0009641: shade avoidance	1.30E-02
132	GO:0006298: mismatch repair	1.30E-02
133	GO:0006259: DNA metabolic process	1.30E-02
134	GO:0006265: DNA topological change	1.44E-02
135	GO:0048229: gametophyte development	1.44E-02
136	GO:0010015: root morphogenesis	1.44E-02
137	GO:0016024: CDP-diacylglycerol biosynthetic process	1.58E-02
138	GO:0008361: regulation of cell size	1.58E-02
139	GO:0006790: sulfur compound metabolic process	1.58E-02
140	GO:0009785: blue light signaling pathway	1.73E-02
141	GO:0009691: cytokinin biosynthetic process	1.73E-02
142	GO:0010075: regulation of meristem growth	1.73E-02
143	GO:0009767: photosynthetic electron transport chain	1.73E-02
144	GO:0010588: cotyledon vascular tissue pattern formation	1.73E-02
145	GO:0006541: glutamine metabolic process	1.89E-02
146	GO:0010207: photosystem II assembly	1.89E-02
147	GO:0010223: secondary shoot formation	1.89E-02
148	GO:0009934: regulation of meristem structural organization	1.89E-02
149	GO:0080188: RNA-directed DNA methylation	2.05E-02
150	GO:0046854: phosphatidylinositol phosphorylation	2.05E-02
151	GO:0006071: glycerol metabolic process	2.21E-02
152	GO:0006833: water transport	2.21E-02
153	GO:0000027: ribosomal large subunit assembly	2.38E-02
154	GO:0080147: root hair cell development	2.38E-02
155	GO:0019344: cysteine biosynthetic process	2.38E-02
156	GO:0016567: protein ubiquitination	2.55E-02
157	GO:0010073: meristem maintenance	2.55E-02
158	GO:0051302: regulation of cell division	2.55E-02
159	GO:0006418: tRNA aminoacylation for protein translation	2.55E-02
160	GO:0009736: cytokinin-activated signaling pathway	2.58E-02
161	GO:0031408: oxylipin biosynthetic process	2.73E-02
162	GO:0003333: amino acid transmembrane transport	2.73E-02
163	GO:0006306: DNA methylation	2.73E-02
164	GO:0006730: one-carbon metabolic process	2.91E-02
165	GO:0031348: negative regulation of defense response	2.91E-02
166	GO:0071215: cellular response to abscisic acid stimulus	3.10E-02
167	GO:0001944: vasculature development	3.10E-02
168	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.10E-02
169	GO:0010091: trichome branching	3.29E-02
170	GO:0006284: base-excision repair	3.29E-02
171	GO:0042127: regulation of cell proliferation	3.29E-02
172	GO:0010089: xylem development	3.29E-02
173	GO:0070417: cellular response to cold	3.48E-02
174	GO:0080167: response to karrikin	3.49E-02
175	GO:0009553: embryo sac development	3.56E-02
176	GO:0008033: tRNA processing	3.68E-02
177	GO:0010087: phloem or xylem histogenesis	3.68E-02
178	GO:0010118: stomatal movement	3.68E-02
179	GO:0048653: anther development	3.68E-02
180	GO:0042631: cellular response to water deprivation	3.68E-02
181	GO:0000226: microtubule cytoskeleton organization	3.68E-02
182	GO:0009958: positive gravitropism	3.88E-02
183	GO:0010305: leaf vascular tissue pattern formation	3.88E-02
184	GO:0007018: microtubule-based movement	4.09E-02
185	GO:0006814: sodium ion transport	4.09E-02
186	GO:0007059: chromosome segregation	4.09E-02
187	GO:0048825: cotyledon development	4.30E-02
188	GO:0008654: phospholipid biosynthetic process	4.30E-02
189	GO:0009851: auxin biosynthetic process	4.30E-02
190	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.51E-02
191	GO:0071554: cell wall organization or biogenesis	4.51E-02
192	GO:0031047: gene silencing by RNA	4.73E-02
193	GO:0019761: glucosinolate biosynthetic process	4.73E-02
194	GO:0009630: gravitropism	4.73E-02
195	GO:0010090: trichome morphogenesis	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0070009: serine-type aminopeptidase activity	0.00E+00
4	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
5	GO:0004519: endonuclease activity	1.81E-08
6	GO:0003723: RNA binding	2.36E-06
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.40E-04
8	GO:0004071: aspartate-ammonia ligase activity	4.40E-04
9	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	4.40E-04
10	GO:0052381: tRNA dimethylallyltransferase activity	4.40E-04
11	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	4.40E-04
12	GO:0004830: tryptophan-tRNA ligase activity	4.40E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.40E-04
14	GO:0004016: adenylate cyclase activity	4.40E-04
15	GO:0042834: peptidoglycan binding	4.40E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.40E-04
17	GO:0009672: auxin:proton symporter activity	9.15E-04
18	GO:0008805: carbon-monoxide oxygenase activity	9.50E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	9.50E-04
20	GO:0008493: tetracycline transporter activity	9.50E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	9.50E-04
22	GO:0015929: hexosaminidase activity	9.50E-04
23	GO:0004563: beta-N-acetylhexosaminidase activity	9.50E-04
24	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.50E-04
25	GO:0003988: acetyl-CoA C-acyltransferase activity	9.50E-04
26	GO:0009884: cytokinin receptor activity	9.50E-04
27	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	9.50E-04
28	GO:0004450: isocitrate dehydrogenase (NADP+) activity	9.50E-04
29	GO:0052832: inositol monophosphate 3-phosphatase activity	9.50E-04
30	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.55E-03
31	GO:0016805: dipeptidase activity	1.55E-03
32	GO:0005034: osmosensor activity	1.55E-03
33	GO:0017150: tRNA dihydrouridine synthase activity	1.55E-03
34	GO:0010329: auxin efflux transmembrane transporter activity	1.59E-03
35	GO:0009982: pseudouridine synthase activity	1.59E-03
36	GO:0019843: rRNA binding	2.12E-03
37	GO:0008508: bile acid:sodium symporter activity	2.24E-03
38	GO:0001872: (1->3)-beta-D-glucan binding	2.24E-03
39	GO:0004930: G-protein coupled receptor activity	3.01E-03
40	GO:0005253: anion channel activity	3.01E-03
41	GO:0046556: alpha-L-arabinofuranosidase activity	3.01E-03
42	GO:0016279: protein-lysine N-methyltransferase activity	3.01E-03
43	GO:0004888: transmembrane signaling receptor activity	3.85E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.85E-03
45	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.85E-03
46	GO:0008725: DNA-3-methyladenine glycosylase activity	3.85E-03
47	GO:0005247: voltage-gated chloride channel activity	4.77E-03
48	GO:0030983: mismatched DNA binding	4.77E-03
49	GO:0004605: phosphatidate cytidylyltransferase activity	4.77E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.77E-03
51	GO:0003777: microtubule motor activity	5.55E-03
52	GO:0004656: procollagen-proline 4-dioxygenase activity	5.75E-03
53	GO:0019900: kinase binding	5.75E-03
54	GO:0004124: cysteine synthase activity	5.75E-03
55	GO:0008195: phosphatidate phosphatase activity	5.75E-03
56	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.75E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.75E-03
58	GO:0008173: RNA methyltransferase activity	9.09E-03
59	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.09E-03
60	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.03E-02
61	GO:0004673: protein histidine kinase activity	1.30E-02
62	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.44E-02
63	GO:0008559: xenobiotic-transporting ATPase activity	1.44E-02
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.48E-02
65	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.58E-02
66	GO:0003725: double-stranded RNA binding	1.73E-02
67	GO:0004022: alcohol dehydrogenase (NAD) activity	1.73E-02
68	GO:0004089: carbonate dehydratase activity	1.73E-02
69	GO:0031072: heat shock protein binding	1.73E-02
70	GO:0000155: phosphorelay sensor kinase activity	1.73E-02
71	GO:0005215: transporter activity	1.92E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.08E-02
73	GO:0031418: L-ascorbic acid binding	2.38E-02
74	GO:0043424: protein histidine kinase binding	2.55E-02
75	GO:0005345: purine nucleobase transmembrane transporter activity	2.55E-02
76	GO:0033612: receptor serine/threonine kinase binding	2.73E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	2.73E-02
78	GO:0035251: UDP-glucosyltransferase activity	2.73E-02
79	GO:0046983: protein dimerization activity	2.74E-02
80	GO:0030570: pectate lyase activity	3.10E-02
81	GO:0004650: polygalacturonase activity	3.35E-02
82	GO:0004812: aminoacyl-tRNA ligase activity	3.48E-02
83	GO:0004674: protein serine/threonine kinase activity	3.49E-02
84	GO:0003713: transcription coactivator activity	3.88E-02
85	GO:0001085: RNA polymerase II transcription factor binding	3.88E-02
86	GO:0052689: carboxylic ester hydrolase activity	3.94E-02
87	GO:0019901: protein kinase binding	4.30E-02
88	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.35E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.51E-02
90	GO:0042803: protein homodimerization activity	4.60E-02
91	GO:0004871: signal transducer activity	4.60E-02
92	GO:0004518: nuclease activity	4.73E-02
93	GO:0000156: phosphorelay response regulator activity	4.94E-02
94	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.96E-02