GO Enrichment Analysis of Co-expressed Genes with
AT4G20940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 3 | GO:0080127: fruit septum development | 0.00E+00 |
| 4 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 5 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 6 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 7 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 8 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 9 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 10 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 11 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 12 | GO:0009658: chloroplast organization | 6.25E-07 |
| 13 | GO:0042793: transcription from plastid promoter | 4.36E-06 |
| 14 | GO:0006364: rRNA processing | 1.09E-05 |
| 15 | GO:0006353: DNA-templated transcription, termination | 1.77E-05 |
| 16 | GO:0048497: maintenance of floral organ identity | 1.58E-04 |
| 17 | GO:0009913: epidermal cell differentiation | 2.25E-04 |
| 18 | GO:0006401: RNA catabolic process | 3.92E-04 |
| 19 | GO:0042127: regulation of cell proliferation | 4.05E-04 |
| 20 | GO:1905039: carboxylic acid transmembrane transport | 4.15E-04 |
| 21 | GO:1905200: gibberellic acid transmembrane transport | 4.15E-04 |
| 22 | GO:1903866: palisade mesophyll development | 4.15E-04 |
| 23 | GO:0090063: positive regulation of microtubule nucleation | 4.15E-04 |
| 24 | GO:0033206: meiotic cytokinesis | 4.15E-04 |
| 25 | GO:0006430: lysyl-tRNA aminoacylation | 4.15E-04 |
| 26 | GO:0034757: negative regulation of iron ion transport | 4.15E-04 |
| 27 | GO:0048598: embryonic morphogenesis | 4.15E-04 |
| 28 | GO:0080112: seed growth | 4.15E-04 |
| 29 | GO:0042255: ribosome assembly | 4.90E-04 |
| 30 | GO:0010501: RNA secondary structure unwinding | 4.98E-04 |
| 31 | GO:0010305: leaf vascular tissue pattern formation | 5.49E-04 |
| 32 | GO:0040008: regulation of growth | 6.03E-04 |
| 33 | GO:0080156: mitochondrial mRNA modification | 7.18E-04 |
| 34 | GO:1900865: chloroplast RNA modification | 8.44E-04 |
| 35 | GO:0048731: system development | 8.99E-04 |
| 36 | GO:0006650: glycerophospholipid metabolic process | 8.99E-04 |
| 37 | GO:0010271: regulation of chlorophyll catabolic process | 8.99E-04 |
| 38 | GO:2000071: regulation of defense response by callose deposition | 8.99E-04 |
| 39 | GO:0010541: acropetal auxin transport | 8.99E-04 |
| 40 | GO:0009662: etioplast organization | 8.99E-04 |
| 41 | GO:0080009: mRNA methylation | 8.99E-04 |
| 42 | GO:0033566: gamma-tubulin complex localization | 8.99E-04 |
| 43 | GO:0009967: positive regulation of signal transduction | 8.99E-04 |
| 44 | GO:0010569: regulation of double-strand break repair via homologous recombination | 8.99E-04 |
| 45 | GO:0009828: plant-type cell wall loosening | 9.15E-04 |
| 46 | GO:0048829: root cap development | 9.82E-04 |
| 47 | GO:0006949: syncytium formation | 9.82E-04 |
| 48 | GO:0045037: protein import into chloroplast stroma | 1.29E-03 |
| 49 | GO:0080117: secondary growth | 1.46E-03 |
| 50 | GO:0090391: granum assembly | 1.46E-03 |
| 51 | GO:0006518: peptide metabolic process | 1.46E-03 |
| 52 | GO:0046168: glycerol-3-phosphate catabolic process | 1.46E-03 |
| 53 | GO:0010588: cotyledon vascular tissue pattern formation | 1.47E-03 |
| 54 | GO:0010020: chloroplast fission | 1.65E-03 |
| 55 | GO:0010540: basipetal auxin transport | 1.65E-03 |
| 56 | GO:0009793: embryo development ending in seed dormancy | 1.70E-03 |
| 57 | GO:0045017: glycerolipid biosynthetic process | 2.11E-03 |
| 58 | GO:0010371: regulation of gibberellin biosynthetic process | 2.11E-03 |
| 59 | GO:0009102: biotin biosynthetic process | 2.11E-03 |
| 60 | GO:0007276: gamete generation | 2.11E-03 |
| 61 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 2.11E-03 |
| 62 | GO:0006072: glycerol-3-phosphate metabolic process | 2.11E-03 |
| 63 | GO:0009734: auxin-activated signaling pathway | 2.14E-03 |
| 64 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.19E-03 |
| 65 | GO:2000377: regulation of reactive oxygen species metabolic process | 2.29E-03 |
| 66 | GO:0003333: amino acid transmembrane transport | 2.78E-03 |
| 67 | GO:0009956: radial pattern formation | 2.84E-03 |
| 68 | GO:0006808: regulation of nitrogen utilization | 2.84E-03 |
| 69 | GO:0006479: protein methylation | 2.84E-03 |
| 70 | GO:1900864: mitochondrial RNA modification | 2.84E-03 |
| 71 | GO:0006221: pyrimidine nucleotide biosynthetic process | 2.84E-03 |
| 72 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 3.04E-03 |
| 73 | GO:0071215: cellular response to abscisic acid stimulus | 3.32E-03 |
| 74 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.32E-03 |
| 75 | GO:0016558: protein import into peroxisome matrix | 3.63E-03 |
| 76 | GO:0016120: carotene biosynthetic process | 3.63E-03 |
| 77 | GO:0016123: xanthophyll biosynthetic process | 3.63E-03 |
| 78 | GO:0009664: plant-type cell wall organization | 3.99E-03 |
| 79 | GO:0008033: tRNA processing | 4.23E-03 |
| 80 | GO:0010087: phloem or xylem histogenesis | 4.23E-03 |
| 81 | GO:0060918: auxin transport | 4.49E-03 |
| 82 | GO:0048831: regulation of shoot system development | 4.49E-03 |
| 83 | GO:0003006: developmental process involved in reproduction | 4.49E-03 |
| 84 | GO:0009643: photosynthetic acclimation | 4.49E-03 |
| 85 | GO:0016554: cytidine to uridine editing | 4.49E-03 |
| 86 | GO:0048825: cotyledon development | 5.26E-03 |
| 87 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.42E-03 |
| 88 | GO:2000033: regulation of seed dormancy process | 5.42E-03 |
| 89 | GO:0009942: longitudinal axis specification | 5.42E-03 |
| 90 | GO:0048509: regulation of meristem development | 5.42E-03 |
| 91 | GO:0010019: chloroplast-nucleus signaling pathway | 5.42E-03 |
| 92 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 5.42E-03 |
| 93 | GO:0010310: regulation of hydrogen peroxide metabolic process | 5.42E-03 |
| 94 | GO:0048367: shoot system development | 5.64E-03 |
| 95 | GO:0009733: response to auxin | 5.99E-03 |
| 96 | GO:0010583: response to cyclopentenone | 6.02E-03 |
| 97 | GO:0032502: developmental process | 6.02E-03 |
| 98 | GO:0006355: regulation of transcription, DNA-templated | 6.31E-03 |
| 99 | GO:0010098: suspensor development | 6.41E-03 |
| 100 | GO:0000082: G1/S transition of mitotic cell cycle | 6.41E-03 |
| 101 | GO:0010444: guard mother cell differentiation | 6.41E-03 |
| 102 | GO:0010103: stomatal complex morphogenesis | 6.41E-03 |
| 103 | GO:0010374: stomatal complex development | 6.41E-03 |
| 104 | GO:0006955: immune response | 6.41E-03 |
| 105 | GO:1900056: negative regulation of leaf senescence | 6.41E-03 |
| 106 | GO:0006351: transcription, DNA-templated | 7.42E-03 |
| 107 | GO:0006402: mRNA catabolic process | 7.45E-03 |
| 108 | GO:0009642: response to light intensity | 7.45E-03 |
| 109 | GO:0046620: regulation of organ growth | 7.45E-03 |
| 110 | GO:0010492: maintenance of shoot apical meristem identity | 7.45E-03 |
| 111 | GO:0052543: callose deposition in cell wall | 7.45E-03 |
| 112 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 7.45E-03 |
| 113 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 7.45E-03 |
| 114 | GO:0010233: phloem transport | 8.55E-03 |
| 115 | GO:0010497: plasmodesmata-mediated intercellular transport | 8.55E-03 |
| 116 | GO:0010052: guard cell differentiation | 8.55E-03 |
| 117 | GO:0032544: plastid translation | 8.55E-03 |
| 118 | GO:0007389: pattern specification process | 8.55E-03 |
| 119 | GO:0009827: plant-type cell wall modification | 8.55E-03 |
| 120 | GO:0019430: removal of superoxide radicals | 8.55E-03 |
| 121 | GO:0010029: regulation of seed germination | 8.64E-03 |
| 122 | GO:0048507: meristem development | 9.71E-03 |
| 123 | GO:0000373: Group II intron splicing | 9.71E-03 |
| 124 | GO:0048589: developmental growth | 9.71E-03 |
| 125 | GO:0009845: seed germination | 1.01E-02 |
| 126 | GO:0048481: plant ovule development | 1.07E-02 |
| 127 | GO:0006349: regulation of gene expression by genetic imprinting | 1.09E-02 |
| 128 | GO:0031425: chloroplast RNA processing | 1.09E-02 |
| 129 | GO:0010218: response to far red light | 1.18E-02 |
| 130 | GO:0006535: cysteine biosynthetic process from serine | 1.22E-02 |
| 131 | GO:0045036: protein targeting to chloroplast | 1.22E-02 |
| 132 | GO:0009641: shade avoidance | 1.22E-02 |
| 133 | GO:0016441: posttranscriptional gene silencing | 1.22E-02 |
| 134 | GO:0006259: DNA metabolic process | 1.22E-02 |
| 135 | GO:0010048: vernalization response | 1.22E-02 |
| 136 | GO:0006865: amino acid transport | 1.30E-02 |
| 137 | GO:0009682: induced systemic resistance | 1.35E-02 |
| 138 | GO:0006265: DNA topological change | 1.35E-02 |
| 139 | GO:0015770: sucrose transport | 1.35E-02 |
| 140 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.35E-02 |
| 141 | GO:0009750: response to fructose | 1.35E-02 |
| 142 | GO:0048229: gametophyte development | 1.35E-02 |
| 143 | GO:0048765: root hair cell differentiation | 1.35E-02 |
| 144 | GO:0046856: phosphatidylinositol dephosphorylation | 1.35E-02 |
| 145 | GO:0009867: jasmonic acid mediated signaling pathway | 1.36E-02 |
| 146 | GO:0009451: RNA modification | 1.42E-02 |
| 147 | GO:0045893: positive regulation of transcription, DNA-templated | 1.42E-02 |
| 148 | GO:0010152: pollen maturation | 1.49E-02 |
| 149 | GO:0010582: floral meristem determinacy | 1.49E-02 |
| 150 | GO:0012501: programmed cell death | 1.49E-02 |
| 151 | GO:0006397: mRNA processing | 1.59E-02 |
| 152 | GO:0010102: lateral root morphogenesis | 1.63E-02 |
| 153 | GO:0009744: response to sucrose | 1.75E-02 |
| 154 | GO:0009933: meristem structural organization | 1.77E-02 |
| 155 | GO:0006270: DNA replication initiation | 1.77E-02 |
| 156 | GO:0009887: animal organ morphogenesis | 1.77E-02 |
| 157 | GO:0048768: root hair cell tip growth | 1.77E-02 |
| 158 | GO:0048467: gynoecium development | 1.77E-02 |
| 159 | GO:0009901: anther dehiscence | 1.92E-02 |
| 160 | GO:0009825: multidimensional cell growth | 1.92E-02 |
| 161 | GO:0080188: RNA-directed DNA methylation | 1.92E-02 |
| 162 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.08E-02 |
| 163 | GO:0006260: DNA replication | 2.13E-02 |
| 164 | GO:0031347: regulation of defense response | 2.13E-02 |
| 165 | GO:0009863: salicylic acid mediated signaling pathway | 2.24E-02 |
| 166 | GO:0010187: negative regulation of seed germination | 2.24E-02 |
| 167 | GO:0019344: cysteine biosynthetic process | 2.24E-02 |
| 168 | GO:0009826: unidimensional cell growth | 2.28E-02 |
| 169 | GO:0009736: cytokinin-activated signaling pathway | 2.37E-02 |
| 170 | GO:0019953: sexual reproduction | 2.40E-02 |
| 171 | GO:0006418: tRNA aminoacylation for protein translation | 2.40E-02 |
| 172 | GO:0016998: cell wall macromolecule catabolic process | 2.57E-02 |
| 173 | GO:0010431: seed maturation | 2.57E-02 |
| 174 | GO:0030245: cellulose catabolic process | 2.74E-02 |
| 175 | GO:0010091: trichome branching | 3.09E-02 |
| 176 | GO:0048443: stamen development | 3.09E-02 |
| 177 | GO:0009740: gibberellic acid mediated signaling pathway | 3.17E-02 |
| 178 | GO:0070417: cellular response to cold | 3.28E-02 |
| 179 | GO:0009624: response to nematode | 3.37E-02 |
| 180 | GO:0042335: cuticle development | 3.46E-02 |
| 181 | GO:0080022: primary root development | 3.46E-02 |
| 182 | GO:0010118: stomatal movement | 3.46E-02 |
| 183 | GO:0006396: RNA processing | 3.47E-02 |
| 184 | GO:0051726: regulation of cell cycle | 3.57E-02 |
| 185 | GO:0071472: cellular response to salt stress | 3.65E-02 |
| 186 | GO:0009741: response to brassinosteroid | 3.65E-02 |
| 187 | GO:0009960: endosperm development | 3.65E-02 |
| 188 | GO:0007018: microtubule-based movement | 3.85E-02 |
| 189 | GO:0007059: chromosome segregation | 3.85E-02 |
| 190 | GO:0051301: cell division | 3.94E-02 |
| 191 | GO:0009749: response to glucose | 4.04E-02 |
| 192 | GO:0008654: phospholipid biosynthetic process | 4.04E-02 |
| 193 | GO:0006468: protein phosphorylation | 4.09E-02 |
| 194 | GO:0002229: defense response to oomycetes | 4.24E-02 |
| 195 | GO:0006635: fatty acid beta-oxidation | 4.24E-02 |
| 196 | GO:0031047: gene silencing by RNA | 4.44E-02 |
| 197 | GO:0030163: protein catabolic process | 4.65E-02 |
| 198 | GO:0032259: methylation | 4.80E-02 |
| 199 | GO:0006464: cellular protein modification process | 4.86E-02 |
| 200 | GO:0019760: glucosinolate metabolic process | 4.86E-02 |
| 201 | GO:0009790: embryo development | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 2 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 3 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 4 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 5 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 6 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 7 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 8 | GO:0003723: RNA binding | 2.79E-07 |
| 9 | GO:0003727: single-stranded RNA binding | 4.05E-04 |
| 10 | GO:0016274: protein-arginine N-methyltransferase activity | 4.15E-04 |
| 11 | GO:0034335: DNA supercoiling activity | 4.15E-04 |
| 12 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 4.15E-04 |
| 13 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 4.15E-04 |
| 14 | GO:0004016: adenylate cyclase activity | 4.15E-04 |
| 15 | GO:1905201: gibberellin transmembrane transporter activity | 4.15E-04 |
| 16 | GO:0004824: lysine-tRNA ligase activity | 4.15E-04 |
| 17 | GO:0042834: peptidoglycan binding | 4.15E-04 |
| 18 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.15E-04 |
| 19 | GO:0008173: RNA methyltransferase activity | 5.98E-04 |
| 20 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 8.99E-04 |
| 21 | GO:0005078: MAP-kinase scaffold activity | 8.99E-04 |
| 22 | GO:0009884: cytokinin receptor activity | 8.99E-04 |
| 23 | GO:0042389: omega-3 fatty acid desaturase activity | 8.99E-04 |
| 24 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 8.99E-04 |
| 25 | GO:0004519: endonuclease activity | 1.28E-03 |
| 26 | GO:0004004: ATP-dependent RNA helicase activity | 1.40E-03 |
| 27 | GO:0008026: ATP-dependent helicase activity | 1.44E-03 |
| 28 | GO:0005034: osmosensor activity | 1.46E-03 |
| 29 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 1.46E-03 |
| 30 | GO:0000175: 3'-5'-exoribonuclease activity | 1.47E-03 |
| 31 | GO:0019843: rRNA binding | 1.86E-03 |
| 32 | GO:0008289: lipid binding | 2.09E-03 |
| 33 | GO:0009041: uridylate kinase activity | 2.11E-03 |
| 34 | GO:0003916: DNA topoisomerase activity | 2.11E-03 |
| 35 | GO:0043565: sequence-specific DNA binding | 2.81E-03 |
| 36 | GO:0010011: auxin binding | 2.84E-03 |
| 37 | GO:0010328: auxin influx transmembrane transporter activity | 2.84E-03 |
| 38 | GO:0042803: protein homodimerization activity | 3.07E-03 |
| 39 | GO:0030570: pectate lyase activity | 3.32E-03 |
| 40 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 3.78E-03 |
| 41 | GO:0004784: superoxide dismutase activity | 4.49E-03 |
| 42 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 4.49E-03 |
| 43 | GO:0003688: DNA replication origin binding | 4.49E-03 |
| 44 | GO:0003690: double-stranded DNA binding | 4.56E-03 |
| 45 | GO:0019900: kinase binding | 5.42E-03 |
| 46 | GO:0004124: cysteine synthase activity | 5.42E-03 |
| 47 | GO:0008168: methyltransferase activity | 5.61E-03 |
| 48 | GO:0030515: snoRNA binding | 6.41E-03 |
| 49 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 7.45E-03 |
| 50 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 8.55E-03 |
| 51 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 8.55E-03 |
| 52 | GO:0003724: RNA helicase activity | 8.55E-03 |
| 53 | GO:0005515: protein binding | 9.56E-03 |
| 54 | GO:0000989: transcription factor activity, transcription factor binding | 9.71E-03 |
| 55 | GO:0004673: protein histidine kinase activity | 1.22E-02 |
| 56 | GO:0008515: sucrose transmembrane transporter activity | 1.35E-02 |
| 57 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.49E-02 |
| 58 | GO:0005524: ATP binding | 1.63E-02 |
| 59 | GO:0000155: phosphorelay sensor kinase activity | 1.63E-02 |
| 60 | GO:0009982: pseudouridine synthase activity | 1.63E-02 |
| 61 | GO:0003725: double-stranded RNA binding | 1.63E-02 |
| 62 | GO:0003712: transcription cofactor activity | 1.92E-02 |
| 63 | GO:0051119: sugar transmembrane transporter activity | 1.92E-02 |
| 64 | GO:0004190: aspartic-type endopeptidase activity | 1.92E-02 |
| 65 | GO:0015293: symporter activity | 1.97E-02 |
| 66 | GO:0003677: DNA binding | 2.19E-02 |
| 67 | GO:0003714: transcription corepressor activity | 2.24E-02 |
| 68 | GO:0043424: protein histidine kinase binding | 2.40E-02 |
| 69 | GO:0016298: lipase activity | 2.45E-02 |
| 70 | GO:0004540: ribonuclease activity | 2.57E-02 |
| 71 | GO:0015171: amino acid transmembrane transporter activity | 2.62E-02 |
| 72 | GO:0003777: microtubule motor activity | 2.62E-02 |
| 73 | GO:0004674: protein serine/threonine kinase activity | 2.85E-02 |
| 74 | GO:0016887: ATPase activity | 2.86E-02 |
| 75 | GO:0008810: cellulase activity | 2.91E-02 |
| 76 | GO:0016874: ligase activity | 3.17E-02 |
| 77 | GO:0003779: actin binding | 3.27E-02 |
| 78 | GO:0018024: histone-lysine N-methyltransferase activity | 3.28E-02 |
| 79 | GO:0004812: aminoacyl-tRNA ligase activity | 3.28E-02 |
| 80 | GO:0005102: receptor binding | 3.28E-02 |
| 81 | GO:0052689: carboxylic ester hydrolase activity | 3.55E-02 |
| 82 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 3.65E-02 |
| 83 | GO:0004386: helicase activity | 3.67E-02 |
| 84 | GO:0019901: protein kinase binding | 4.04E-02 |
| 85 | GO:0048038: quinone binding | 4.24E-02 |
| 86 | GO:0030170: pyridoxal phosphate binding | 4.67E-02 |
| 87 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.78E-02 |
| 88 | GO:0016791: phosphatase activity | 4.86E-02 |