Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G20870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0015670: carbon dioxide transport0.00E+00
5GO:0046471: phosphatidylglycerol metabolic process0.00E+00
6GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
7GO:0034337: RNA folding0.00E+00
8GO:0006982: response to lipid hydroperoxide0.00E+00
9GO:0010335: response to non-ionic osmotic stress0.00E+00
10GO:1901918: negative regulation of exoribonuclease activity0.00E+00
11GO:0010207: photosystem II assembly4.98E-08
12GO:0015995: chlorophyll biosynthetic process2.85E-07
13GO:0006094: gluconeogenesis2.08E-06
14GO:0055114: oxidation-reduction process2.45E-05
15GO:0015994: chlorophyll metabolic process7.23E-05
16GO:0010143: cutin biosynthetic process8.72E-05
17GO:0042549: photosystem II stabilization1.63E-04
18GO:0019722: calcium-mediated signaling2.73E-04
19GO:0010362: negative regulation of anion channel activity by blue light3.40E-04
20GO:0015969: guanosine tetraphosphate metabolic process3.40E-04
21GO:0046467: membrane lipid biosynthetic process3.40E-04
22GO:0043489: RNA stabilization3.40E-04
23GO:0010426: DNA methylation on cytosine within a CHH sequence3.40E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process3.40E-04
25GO:0071277: cellular response to calcium ion3.40E-04
26GO:0000481: maturation of 5S rRNA3.40E-04
27GO:1904964: positive regulation of phytol biosynthetic process3.40E-04
28GO:0043087: regulation of GTPase activity3.40E-04
29GO:0071461: cellular response to redox state3.40E-04
30GO:0046167: glycerol-3-phosphate biosynthetic process3.40E-04
31GO:0043007: maintenance of rDNA3.40E-04
32GO:1902458: positive regulation of stomatal opening3.40E-04
33GO:0009704: de-etiolation3.64E-04
34GO:0016559: peroxisome fission3.64E-04
35GO:0006098: pentose-phosphate shunt5.35E-04
36GO:0007267: cell-cell signaling6.78E-04
37GO:0042819: vitamin B6 biosynthetic process7.40E-04
38GO:0035304: regulation of protein dephosphorylation7.40E-04
39GO:0080005: photosystem stoichiometry adjustment7.40E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process7.40E-04
41GO:0006650: glycerophospholipid metabolic process7.40E-04
42GO:0010155: regulation of proton transport7.40E-04
43GO:0006729: tetrahydrobiopterin biosynthetic process7.40E-04
44GO:1903426: regulation of reactive oxygen species biosynthetic process7.40E-04
45GO:0015790: UDP-xylose transport7.40E-04
46GO:0030388: fructose 1,6-bisphosphate metabolic process7.40E-04
47GO:0009658: chloroplast organization8.32E-04
48GO:0016024: CDP-diacylglycerol biosynthetic process9.69E-04
49GO:0006000: fructose metabolic process1.20E-03
50GO:0046168: glycerol-3-phosphate catabolic process1.20E-03
51GO:0044375: regulation of peroxisome size1.20E-03
52GO:0046621: negative regulation of organ growth1.20E-03
53GO:0044550: secondary metabolite biosynthetic process1.40E-03
54GO:0015979: photosynthesis1.52E-03
55GO:0006636: unsaturated fatty acid biosynthetic process1.54E-03
56GO:0006833: water transport1.54E-03
57GO:0006072: glycerol-3-phosphate metabolic process1.72E-03
58GO:0008615: pyridoxine biosynthetic process1.72E-03
59GO:0010731: protein glutathionylation1.72E-03
60GO:0042823: pyridoxal phosphate biosynthetic process1.72E-03
61GO:2001141: regulation of RNA biosynthetic process1.72E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.72E-03
63GO:0009152: purine ribonucleotide biosynthetic process1.72E-03
64GO:0046653: tetrahydrofolate metabolic process1.72E-03
65GO:0016226: iron-sulfur cluster assembly2.26E-03
66GO:0010600: regulation of auxin biosynthetic process2.31E-03
67GO:0006021: inositol biosynthetic process2.31E-03
68GO:2000306: positive regulation of photomorphogenesis2.31E-03
69GO:0009904: chloroplast accumulation movement2.96E-03
70GO:0045038: protein import into chloroplast thylakoid membrane2.96E-03
71GO:0009107: lipoate biosynthetic process2.96E-03
72GO:0016123: xanthophyll biosynthetic process2.96E-03
73GO:0006465: signal peptide processing2.96E-03
74GO:0034220: ion transmembrane transport3.13E-03
75GO:0006520: cellular amino acid metabolic process3.38E-03
76GO:0010182: sugar mediated signaling pathway3.38E-03
77GO:0009741: response to brassinosteroid3.38E-03
78GO:0006655: phosphatidylglycerol biosynthetic process3.65E-03
79GO:0045962: positive regulation of development, heterochronic3.65E-03
80GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.65E-03
81GO:0046855: inositol phosphate dephosphorylation3.65E-03
82GO:0006096: glycolytic process3.68E-03
83GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.40E-03
84GO:0045926: negative regulation of growth4.40E-03
85GO:1901259: chloroplast rRNA processing4.40E-03
86GO:0000054: ribosomal subunit export from nucleus4.40E-03
87GO:0009903: chloroplast avoidance movement4.40E-03
88GO:0010189: vitamin E biosynthetic process4.40E-03
89GO:0032502: developmental process4.45E-03
90GO:0048437: floral organ development5.19E-03
91GO:1900057: positive regulation of leaf senescence5.19E-03
92GO:0006400: tRNA modification5.19E-03
93GO:0010161: red light signaling pathway5.19E-03
94GO:0006810: transport5.53E-03
95GO:0010928: regulation of auxin mediated signaling pathway6.03E-03
96GO:0009690: cytokinin metabolic process6.03E-03
97GO:0042255: ribosome assembly6.03E-03
98GO:0006353: DNA-templated transcription, termination6.03E-03
99GO:0032508: DNA duplex unwinding6.03E-03
100GO:0010027: thylakoid membrane organization6.03E-03
101GO:2000070: regulation of response to water deprivation6.03E-03
102GO:0007155: cell adhesion6.03E-03
103GO:0048564: photosystem I assembly6.03E-03
104GO:0007186: G-protein coupled receptor signaling pathway6.92E-03
105GO:0009657: plastid organization6.92E-03
106GO:0006526: arginine biosynthetic process6.92E-03
107GO:0009932: cell tip growth6.92E-03
108GO:0006002: fructose 6-phosphate metabolic process6.92E-03
109GO:0071482: cellular response to light stimulus6.92E-03
110GO:0015996: chlorophyll catabolic process6.92E-03
111GO:0010411: xyloglucan metabolic process7.10E-03
112GO:0009821: alkaloid biosynthetic process7.85E-03
113GO:0051865: protein autoubiquitination7.85E-03
114GO:0090305: nucleic acid phosphodiester bond hydrolysis7.85E-03
115GO:0090333: regulation of stomatal closure7.85E-03
116GO:0018298: protein-chromophore linkage7.88E-03
117GO:0032259: methylation8.81E-03
118GO:0010205: photoinhibition8.82E-03
119GO:0009638: phototropism8.82E-03
120GO:0007568: aging9.11E-03
121GO:0006535: cysteine biosynthetic process from serine9.84E-03
122GO:0009688: abscisic acid biosynthetic process9.84E-03
123GO:0009641: shade avoidance9.84E-03
124GO:0016051: carbohydrate biosynthetic process1.00E-02
125GO:0009637: response to blue light1.00E-02
126GO:0019684: photosynthesis, light reaction1.09E-02
127GO:0009773: photosynthetic electron transport in photosystem I1.09E-02
128GO:0006352: DNA-templated transcription, initiation1.09E-02
129GO:0006415: translational termination1.09E-02
130GO:0006631: fatty acid metabolic process1.19E-02
131GO:0045037: protein import into chloroplast stroma1.20E-02
132GO:0006790: sulfur compound metabolic process1.20E-02
133GO:0010114: response to red light1.29E-02
134GO:0009785: blue light signaling pathway1.31E-02
135GO:0018107: peptidyl-threonine phosphorylation1.31E-02
136GO:0009718: anthocyanin-containing compound biosynthetic process1.31E-02
137GO:0009725: response to hormone1.31E-02
138GO:0005986: sucrose biosynthetic process1.31E-02
139GO:0042546: cell wall biogenesis1.34E-02
140GO:0034605: cellular response to heat1.43E-02
141GO:0010020: chloroplast fission1.43E-02
142GO:0019253: reductive pentose-phosphate cycle1.43E-02
143GO:0010223: secondary shoot formation1.43E-02
144GO:0009266: response to temperature stimulus1.43E-02
145GO:0009636: response to toxic substance1.45E-02
146GO:0042343: indole glucosinolate metabolic process1.55E-02
147GO:0019853: L-ascorbic acid biosynthetic process1.55E-02
148GO:0046854: phosphatidylinositol phosphorylation1.55E-02
149GO:0007031: peroxisome organization1.55E-02
150GO:0010025: wax biosynthetic process1.67E-02
151GO:0019762: glucosinolate catabolic process1.67E-02
152GO:0019344: cysteine biosynthetic process1.80E-02
153GO:0006857: oligopeptide transport1.87E-02
154GO:0009735: response to cytokinin1.95E-02
155GO:0043086: negative regulation of catalytic activity2.07E-02
156GO:0006306: DNA methylation2.07E-02
157GO:0048511: rhythmic process2.07E-02
158GO:0098542: defense response to other organism2.07E-02
159GO:0010017: red or far-red light signaling pathway2.21E-02
160GO:0030433: ubiquitin-dependent ERAD pathway2.21E-02
161GO:0080092: regulation of pollen tube growth2.21E-02
162GO:0006817: phosphate ion transport2.49E-02
163GO:0009561: megagametogenesis2.49E-02
164GO:0009306: protein secretion2.49E-02
165GO:0006396: RNA processing2.56E-02
166GO:0009742: brassinosteroid mediated signaling pathway2.64E-02
167GO:0045489: pectin biosynthetic process2.94E-02
168GO:0009646: response to absence of light3.10E-02
169GO:0009791: post-embryonic development3.25E-02
170GO:0019252: starch biosynthetic process3.25E-02
171GO:0008654: phospholipid biosynthetic process3.25E-02
172GO:0009058: biosynthetic process3.28E-02
173GO:0016042: lipid catabolic process3.36E-02
174GO:0007264: small GTPase mediated signal transduction3.58E-02
175GO:0030163: protein catabolic process3.75E-02
176GO:0006633: fatty acid biosynthetic process3.91E-02
177GO:0007623: circadian rhythm4.29E-02
178GO:0005975: carbohydrate metabolic process4.43E-02
179GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.62E-02
180GO:0042128: nitrate assimilation4.80E-02
RankGO TermAdjusted P value
1GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
2GO:0045550: geranylgeranyl reductase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0004332: fructose-bisphosphate aldolase activity2.58E-06
9GO:0018708: thiol S-methyltransferase activity5.21E-06
10GO:0016491: oxidoreductase activity2.96E-05
11GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.63E-04
12GO:0010242: oxygen evolving activity3.40E-04
13GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.40E-04
14GO:0031957: very long-chain fatty acid-CoA ligase activity3.40E-04
15GO:0004328: formamidase activity3.40E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity3.40E-04
17GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.40E-04
18GO:0071949: FAD binding5.35E-04
19GO:0042802: identical protein binding5.87E-04
20GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity7.40E-04
21GO:0043024: ribosomal small subunit binding7.40E-04
22GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity7.40E-04
23GO:0008934: inositol monophosphate 1-phosphatase activity7.40E-04
24GO:0052833: inositol monophosphate 4-phosphatase activity7.40E-04
25GO:0005464: UDP-xylose transmembrane transporter activity7.40E-04
26GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity7.40E-04
27GO:0008728: GTP diphosphokinase activity7.40E-04
28GO:0050017: L-3-cyanoalanine synthase activity7.40E-04
29GO:0047746: chlorophyllase activity7.40E-04
30GO:0042389: omega-3 fatty acid desaturase activity7.40E-04
31GO:0052832: inositol monophosphate 3-phosphatase activity7.40E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.40E-04
33GO:0004565: beta-galactosidase activity1.10E-03
34GO:0031072: heat shock protein binding1.10E-03
35GO:0019843: rRNA binding1.18E-03
36GO:0050734: hydroxycinnamoyltransferase activity1.20E-03
37GO:0016992: lipoate synthase activity1.20E-03
38GO:0005504: fatty acid binding1.20E-03
39GO:0032947: protein complex scaffold1.20E-03
40GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.20E-03
41GO:0030267: glyoxylate reductase (NADP) activity1.20E-03
42GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.20E-03
43GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.20E-03
44GO:0008864: formyltetrahydrofolate deformylase activity1.20E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.20E-03
46GO:0010277: chlorophyllide a oxygenase [overall] activity1.20E-03
47GO:0008266: poly(U) RNA binding1.23E-03
48GO:0051536: iron-sulfur cluster binding1.70E-03
49GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.72E-03
50GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.72E-03
51GO:0016851: magnesium chelatase activity1.72E-03
52GO:0009882: blue light photoreceptor activity1.72E-03
53GO:0016987: sigma factor activity2.31E-03
54GO:0045430: chalcone isomerase activity2.31E-03
55GO:0043495: protein anchor2.31E-03
56GO:0001053: plastid sigma factor activity2.31E-03
57GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.31E-03
58GO:0003727: single-stranded RNA binding2.68E-03
59GO:0000293: ferric-chelate reductase activity3.65E-03
60GO:0035673: oligopeptide transmembrane transporter activity3.65E-03
61GO:0042578: phosphoric ester hydrolase activity3.65E-03
62GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.65E-03
63GO:0016788: hydrolase activity, acting on ester bonds3.86E-03
64GO:0016762: xyloglucan:xyloglucosyl transferase activity4.17E-03
65GO:0048038: quinone binding4.17E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.40E-03
67GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.40E-03
68GO:0102391: decanoate--CoA ligase activity4.40E-03
69GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.40E-03
70GO:0004124: cysteine synthase activity4.40E-03
71GO:0051920: peroxiredoxin activity4.40E-03
72GO:0019899: enzyme binding5.19E-03
73GO:0004467: long-chain fatty acid-CoA ligase activity5.19E-03
74GO:0003729: mRNA binding5.69E-03
75GO:0015250: water channel activity6.03E-03
76GO:0016209: antioxidant activity6.03E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.92E-03
78GO:0008135: translation factor activity, RNA binding6.92E-03
79GO:0016798: hydrolase activity, acting on glycosyl bonds7.10E-03
80GO:0005506: iron ion binding7.22E-03
81GO:0016844: strictosidine synthase activity8.82E-03
82GO:0005089: Rho guanyl-nucleotide exchange factor activity1.09E-02
83GO:0015198: oligopeptide transporter activity1.20E-02
84GO:0004364: glutathione transferase activity1.24E-02
85GO:0005315: inorganic phosphate transmembrane transporter activity1.31E-02
86GO:0000155: phosphorelay sensor kinase activity1.31E-02
87GO:0035091: phosphatidylinositol binding1.40E-02
88GO:0051537: 2 iron, 2 sulfur cluster binding1.40E-02
89GO:0031624: ubiquitin conjugating enzyme binding1.43E-02
90GO:0008168: methyltransferase activity1.56E-02
91GO:0051287: NAD binding1.57E-02
92GO:0003690: double-stranded DNA binding1.81E-02
93GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.21E-02
94GO:0022891: substrate-specific transmembrane transporter activity2.35E-02
95GO:0052689: carboxylic ester hydrolase activity2.43E-02
96GO:0051082: unfolded protein binding2.49E-02
97GO:0005215: transporter activity2.63E-02
98GO:0004871: signal transducer activity2.85E-02
99GO:0008080: N-acetyltransferase activity2.94E-02
100GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.96E-02
101GO:0010181: FMN binding3.10E-02
102GO:0004872: receptor activity3.25E-02
103GO:0030170: pyridoxal phosphate binding3.46E-02
104GO:0003924: GTPase activity3.49E-02
105GO:0004518: nuclease activity3.58E-02
106GO:0016791: phosphatase activity3.92E-02
107GO:0046910: pectinesterase inhibitor activity4.00E-02
108GO:0016722: oxidoreductase activity, oxidizing metal ions4.09E-02
109GO:0005525: GTP binding4.60E-02
110GO:0016168: chlorophyll binding4.62E-02
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Gene type



Gene DE type