GO Enrichment Analysis of Co-expressed Genes with
AT4G20820
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0015843: methylammonium transport | 0.00E+00 |
| 3 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 4 | GO:0009451: RNA modification | 4.91E-07 |
| 5 | GO:0042793: transcription from plastid promoter | 6.92E-07 |
| 6 | GO:0046620: regulation of organ growth | 3.03E-06 |
| 7 | GO:0009734: auxin-activated signaling pathway | 4.12E-05 |
| 8 | GO:0009926: auxin polar transport | 8.56E-05 |
| 9 | GO:0010583: response to cyclopentenone | 2.03E-04 |
| 10 | GO:0010480: microsporocyte differentiation | 2.04E-04 |
| 11 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.04E-04 |
| 12 | GO:0050801: ion homeostasis | 2.04E-04 |
| 13 | GO:0034757: negative regulation of iron ion transport | 2.04E-04 |
| 14 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 2.04E-04 |
| 15 | GO:0009658: chloroplast organization | 2.13E-04 |
| 16 | GO:0010271: regulation of chlorophyll catabolic process | 4.57E-04 |
| 17 | GO:0071497: cellular response to freezing | 4.57E-04 |
| 18 | GO:0009662: etioplast organization | 4.57E-04 |
| 19 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.57E-04 |
| 20 | GO:0048255: mRNA stabilization | 4.57E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.57E-04 |
| 22 | GO:0009733: response to auxin | 6.00E-04 |
| 23 | GO:0080117: secondary growth | 7.44E-04 |
| 24 | GO:0042780: tRNA 3'-end processing | 7.44E-04 |
| 25 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 7.44E-04 |
| 26 | GO:0010447: response to acidic pH | 7.44E-04 |
| 27 | GO:0015696: ammonium transport | 1.06E-03 |
| 28 | GO:0046739: transport of virus in multicellular host | 1.06E-03 |
| 29 | GO:2000904: regulation of starch metabolic process | 1.06E-03 |
| 30 | GO:0043572: plastid fission | 1.06E-03 |
| 31 | GO:2001141: regulation of RNA biosynthetic process | 1.06E-03 |
| 32 | GO:1902476: chloride transmembrane transport | 1.06E-03 |
| 33 | GO:0010239: chloroplast mRNA processing | 1.06E-03 |
| 34 | GO:0044211: CTP salvage | 1.06E-03 |
| 35 | GO:0044206: UMP salvage | 1.41E-03 |
| 36 | GO:0046656: folic acid biosynthetic process | 1.41E-03 |
| 37 | GO:0006021: inositol biosynthetic process | 1.41E-03 |
| 38 | GO:0006346: methylation-dependent chromatin silencing | 1.41E-03 |
| 39 | GO:1901141: regulation of lignin biosynthetic process | 1.41E-03 |
| 40 | GO:0072488: ammonium transmembrane transport | 1.41E-03 |
| 41 | GO:0006544: glycine metabolic process | 1.80E-03 |
| 42 | GO:0009904: chloroplast accumulation movement | 1.80E-03 |
| 43 | GO:0048497: maintenance of floral organ identity | 1.80E-03 |
| 44 | GO:0009107: lipoate biosynthetic process | 1.80E-03 |
| 45 | GO:0032502: developmental process | 2.14E-03 |
| 46 | GO:0006206: pyrimidine nucleobase metabolic process | 2.21E-03 |
| 47 | GO:0009228: thiamine biosynthetic process | 2.21E-03 |
| 48 | GO:0009913: epidermal cell differentiation | 2.21E-03 |
| 49 | GO:0048831: regulation of shoot system development | 2.21E-03 |
| 50 | GO:0006563: L-serine metabolic process | 2.21E-03 |
| 51 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.21E-03 |
| 52 | GO:0045962: positive regulation of development, heterochronic | 2.21E-03 |
| 53 | GO:0009828: plant-type cell wall loosening | 2.43E-03 |
| 54 | GO:1901259: chloroplast rRNA processing | 2.66E-03 |
| 55 | GO:0009942: longitudinal axis specification | 2.66E-03 |
| 56 | GO:0048509: regulation of meristem development | 2.66E-03 |
| 57 | GO:0046654: tetrahydrofolate biosynthetic process | 2.66E-03 |
| 58 | GO:0009903: chloroplast avoidance movement | 2.66E-03 |
| 59 | GO:0030488: tRNA methylation | 2.66E-03 |
| 60 | GO:2000067: regulation of root morphogenesis | 2.66E-03 |
| 61 | GO:0009955: adaxial/abaxial pattern specification | 2.66E-03 |
| 62 | GO:0009396: folic acid-containing compound biosynthetic process | 3.13E-03 |
| 63 | GO:0006821: chloride transport | 3.13E-03 |
| 64 | GO:0048437: floral organ development | 3.13E-03 |
| 65 | GO:0010411: xyloglucan metabolic process | 3.40E-03 |
| 66 | GO:0040008: regulation of growth | 3.44E-03 |
| 67 | GO:0001522: pseudouridine synthesis | 3.63E-03 |
| 68 | GO:0000105: histidine biosynthetic process | 3.63E-03 |
| 69 | GO:0000160: phosphorelay signal transduction system | 3.95E-03 |
| 70 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.15E-03 |
| 71 | GO:0010052: guard cell differentiation | 4.15E-03 |
| 72 | GO:0007389: pattern specification process | 4.15E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 4.15E-03 |
| 74 | GO:0071482: cellular response to light stimulus | 4.15E-03 |
| 75 | GO:0000373: Group II intron splicing | 4.70E-03 |
| 76 | GO:0009637: response to blue light | 4.76E-03 |
| 77 | GO:0042761: very long-chain fatty acid biosynthetic process | 5.27E-03 |
| 78 | GO:0035999: tetrahydrofolate interconversion | 5.27E-03 |
| 79 | GO:0009641: shade avoidance | 5.86E-03 |
| 80 | GO:0006949: syncytium formation | 5.86E-03 |
| 81 | GO:0010114: response to red light | 6.13E-03 |
| 82 | GO:0042546: cell wall biogenesis | 6.38E-03 |
| 83 | GO:0008285: negative regulation of cell proliferation | 6.48E-03 |
| 84 | GO:0006352: DNA-templated transcription, initiation | 6.48E-03 |
| 85 | GO:0048229: gametophyte development | 6.48E-03 |
| 86 | GO:0006790: sulfur compound metabolic process | 7.12E-03 |
| 87 | GO:0009664: plant-type cell wall organization | 7.70E-03 |
| 88 | GO:0010075: regulation of meristem growth | 7.78E-03 |
| 89 | GO:0009736: cytokinin-activated signaling pathway | 8.27E-03 |
| 90 | GO:0010020: chloroplast fission | 8.47E-03 |
| 91 | GO:0009934: regulation of meristem structural organization | 8.47E-03 |
| 92 | GO:0010039: response to iron ion | 9.17E-03 |
| 93 | GO:0046854: phosphatidylinositol phosphorylation | 9.17E-03 |
| 94 | GO:0006071: glycerol metabolic process | 9.90E-03 |
| 95 | GO:0000027: ribosomal large subunit assembly | 1.06E-02 |
| 96 | GO:0019953: sexual reproduction | 1.14E-02 |
| 97 | GO:0006418: tRNA aminoacylation for protein translation | 1.14E-02 |
| 98 | GO:0016998: cell wall macromolecule catabolic process | 1.22E-02 |
| 99 | GO:0006306: DNA methylation | 1.22E-02 |
| 100 | GO:0009742: brassinosteroid mediated signaling pathway | 1.25E-02 |
| 101 | GO:0080092: regulation of pollen tube growth | 1.30E-02 |
| 102 | GO:0071215: cellular response to abscisic acid stimulus | 1.38E-02 |
| 103 | GO:0010082: regulation of root meristem growth | 1.38E-02 |
| 104 | GO:0070417: cellular response to cold | 1.55E-02 |
| 105 | GO:0010087: phloem or xylem histogenesis | 1.64E-02 |
| 106 | GO:0048653: anther development | 1.64E-02 |
| 107 | GO:0048868: pollen tube development | 1.73E-02 |
| 108 | GO:0009741: response to brassinosteroid | 1.73E-02 |
| 109 | GO:0048544: recognition of pollen | 1.82E-02 |
| 110 | GO:0009646: response to absence of light | 1.82E-02 |
| 111 | GO:0048825: cotyledon development | 1.92E-02 |
| 112 | GO:0055072: iron ion homeostasis | 1.92E-02 |
| 113 | GO:0009851: auxin biosynthetic process | 1.92E-02 |
| 114 | GO:0007275: multicellular organism development | 1.97E-02 |
| 115 | GO:0031047: gene silencing by RNA | 2.11E-02 |
| 116 | GO:0009739: response to gibberellin | 2.29E-02 |
| 117 | GO:0010252: auxin homeostasis | 2.30E-02 |
| 118 | GO:0006464: cellular protein modification process | 2.30E-02 |
| 119 | GO:0009793: embryo development ending in seed dormancy | 2.59E-02 |
| 120 | GO:0001666: response to hypoxia | 2.61E-02 |
| 121 | GO:0010029: regulation of seed germination | 2.72E-02 |
| 122 | GO:0006974: cellular response to DNA damage stimulus | 2.83E-02 |
| 123 | GO:0009826: unidimensional cell growth | 3.05E-02 |
| 124 | GO:0048481: plant ovule development | 3.16E-02 |
| 125 | GO:0009631: cold acclimation | 3.50E-02 |
| 126 | GO:0010119: regulation of stomatal movement | 3.50E-02 |
| 127 | GO:0048366: leaf development | 3.72E-02 |
| 128 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.05E-02 |
| 129 | GO:0030001: metal ion transport | 4.10E-02 |
| 130 | GO:0006631: fatty acid metabolic process | 4.22E-02 |
| 131 | GO:0008283: cell proliferation | 4.47E-02 |
| 132 | GO:0009636: response to toxic substance | 4.86E-02 |
| 133 | GO:0009965: leaf morphogenesis | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 2 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 3 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 4 | GO:0004519: endonuclease activity | 1.91E-05 |
| 5 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 2.04E-04 |
| 6 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.04E-04 |
| 7 | GO:0004830: tryptophan-tRNA ligase activity | 2.04E-04 |
| 8 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.04E-04 |
| 9 | GO:0004156: dihydropteroate synthase activity | 2.04E-04 |
| 10 | GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | 2.04E-04 |
| 11 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.57E-04 |
| 12 | GO:0009884: cytokinin receptor activity | 4.57E-04 |
| 13 | GO:0017118: lipoyltransferase activity | 4.57E-04 |
| 14 | GO:0016415: octanoyltransferase activity | 4.57E-04 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.57E-04 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.57E-04 |
| 17 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 7.44E-04 |
| 18 | GO:0005034: osmosensor activity | 7.44E-04 |
| 19 | GO:0046524: sucrose-phosphate synthase activity | 7.44E-04 |
| 20 | GO:0070330: aromatase activity | 7.44E-04 |
| 21 | GO:0017150: tRNA dihydrouridine synthase activity | 7.44E-04 |
| 22 | GO:0001872: (1->3)-beta-D-glucan binding | 1.06E-03 |
| 23 | GO:0005253: anion channel activity | 1.41E-03 |
| 24 | GO:0001053: plastid sigma factor activity | 1.41E-03 |
| 25 | GO:0004845: uracil phosphoribosyltransferase activity | 1.41E-03 |
| 26 | GO:0016987: sigma factor activity | 1.41E-03 |
| 27 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.80E-03 |
| 28 | GO:0004372: glycine hydroxymethyltransferase activity | 1.80E-03 |
| 29 | GO:0018685: alkane 1-monooxygenase activity | 1.80E-03 |
| 30 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.01E-03 |
| 31 | GO:0008519: ammonium transmembrane transporter activity | 2.21E-03 |
| 32 | GO:0005247: voltage-gated chloride channel activity | 2.21E-03 |
| 33 | GO:0019843: rRNA binding | 2.42E-03 |
| 34 | GO:0003723: RNA binding | 2.60E-03 |
| 35 | GO:0004849: uridine kinase activity | 2.66E-03 |
| 36 | GO:0019900: kinase binding | 2.66E-03 |
| 37 | GO:0008195: phosphatidate phosphatase activity | 2.66E-03 |
| 38 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.66E-03 |
| 39 | GO:0003872: 6-phosphofructokinase activity | 3.13E-03 |
| 40 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.40E-03 |
| 41 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.70E-03 |
| 42 | GO:0003993: acid phosphatase activity | 4.98E-03 |
| 43 | GO:0009672: auxin:proton symporter activity | 5.27E-03 |
| 44 | GO:0004673: protein histidine kinase activity | 5.86E-03 |
| 45 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 6.48E-03 |
| 46 | GO:0010329: auxin efflux transmembrane transporter activity | 7.78E-03 |
| 47 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.78E-03 |
| 48 | GO:0031072: heat shock protein binding | 7.78E-03 |
| 49 | GO:0000155: phosphorelay sensor kinase activity | 7.78E-03 |
| 50 | GO:0009982: pseudouridine synthase activity | 7.78E-03 |
| 51 | GO:0043424: protein histidine kinase binding | 1.14E-02 |
| 52 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.14E-02 |
| 53 | GO:0004176: ATP-dependent peptidase activity | 1.22E-02 |
| 54 | GO:0033612: receptor serine/threonine kinase binding | 1.22E-02 |
| 55 | GO:0004812: aminoacyl-tRNA ligase activity | 1.55E-02 |
| 56 | GO:0003713: transcription coactivator activity | 1.73E-02 |
| 57 | GO:0019901: protein kinase binding | 1.92E-02 |
| 58 | GO:0000156: phosphorelay response regulator activity | 2.21E-02 |
| 59 | GO:0008237: metallopeptidase activity | 2.41E-02 |
| 60 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.41E-02 |
| 61 | GO:0042802: identical protein binding | 2.60E-02 |
| 62 | GO:0030247: polysaccharide binding | 2.94E-02 |
| 63 | GO:0004222: metalloendopeptidase activity | 3.38E-02 |
| 64 | GO:0046872: metal ion binding | 3.87E-02 |
| 65 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.98E-02 |
| 66 | GO:0042393: histone binding | 4.10E-02 |
| 67 | GO:0043621: protein self-association | 4.73E-02 |