Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G19985

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0019685: photosynthesis, dark reaction0.00E+00
3GO:2000505: regulation of energy homeostasis0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0031054: pre-miRNA processing0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0042407: cristae formation0.00E+00
15GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
16GO:0009106: lipoate metabolic process0.00E+00
17GO:0090042: tubulin deacetylation0.00E+00
18GO:0071474: cellular hyperosmotic response0.00E+00
19GO:0006114: glycerol biosynthetic process0.00E+00
20GO:0018023: peptidyl-lysine trimethylation0.00E+00
21GO:0015995: chlorophyll biosynthetic process3.50E-10
22GO:0010207: photosystem II assembly5.87E-07
23GO:0010027: thylakoid membrane organization2.74E-06
24GO:0015979: photosynthesis2.82E-05
25GO:0071482: cellular response to light stimulus6.58E-05
26GO:0006783: heme biosynthetic process8.82E-05
27GO:2001141: regulation of RNA biosynthetic process1.16E-04
28GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.16E-04
29GO:0006782: protoporphyrinogen IX biosynthetic process1.46E-04
30GO:0045038: protein import into chloroplast thylakoid membrane2.99E-04
31GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.18E-04
32GO:0010190: cytochrome b6f complex assembly4.18E-04
33GO:0034337: RNA folding6.22E-04
34GO:0048363: mucilage pectin metabolic process6.22E-04
35GO:0000476: maturation of 4.5S rRNA6.22E-04
36GO:0009443: pyridoxal 5'-phosphate salvage6.22E-04
37GO:0000967: rRNA 5'-end processing6.22E-04
38GO:1902478: negative regulation of defense response to bacterium, incompatible interaction6.22E-04
39GO:0015671: oxygen transport6.22E-04
40GO:1904966: positive regulation of vitamin E biosynthetic process6.22E-04
41GO:0000481: maturation of 5S rRNA6.22E-04
42GO:0015801: aromatic amino acid transport6.22E-04
43GO:1904964: positive regulation of phytol biosynthetic process6.22E-04
44GO:0043686: co-translational protein modification6.22E-04
45GO:1902458: positive regulation of stomatal opening6.22E-04
46GO:0016559: peroxisome fission8.83E-04
47GO:0048564: photosystem I assembly8.83E-04
48GO:0006605: protein targeting8.83E-04
49GO:0009735: response to cytokinin1.02E-03
50GO:0032544: plastid translation1.07E-03
51GO:0009658: chloroplast organization1.10E-03
52GO:0019432: triglyceride biosynthetic process1.28E-03
53GO:0006729: tetrahydrobiopterin biosynthetic process1.34E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.34E-03
55GO:0051262: protein tetramerization1.34E-03
56GO:0034470: ncRNA processing1.34E-03
57GO:0010275: NAD(P)H dehydrogenase complex assembly1.34E-03
58GO:0010198: synergid death1.34E-03
59GO:1900871: chloroplast mRNA modification1.34E-03
60GO:1902326: positive regulation of chlorophyll biosynthetic process1.34E-03
61GO:0018026: peptidyl-lysine monomethylation1.34E-03
62GO:0000256: allantoin catabolic process1.34E-03
63GO:0090342: regulation of cell aging1.34E-03
64GO:0006423: cysteinyl-tRNA aminoacylation1.34E-03
65GO:0006435: threonyl-tRNA aminoacylation1.34E-03
66GO:0071668: plant-type cell wall assembly1.34E-03
67GO:0080183: response to photooxidative stress1.34E-03
68GO:0006779: porphyrin-containing compound biosynthetic process1.52E-03
69GO:0009089: lysine biosynthetic process via diaminopimelate2.05E-03
70GO:0009773: photosynthetic electron transport in photosystem I2.05E-03
71GO:0006352: DNA-templated transcription, initiation2.05E-03
72GO:0010136: ureide catabolic process2.20E-03
73GO:0010589: leaf proximal/distal pattern formation2.20E-03
74GO:0034051: negative regulation of plant-type hypersensitive response2.20E-03
75GO:0051604: protein maturation2.20E-03
76GO:0015940: pantothenate biosynthetic process2.20E-03
77GO:0044375: regulation of peroxisome size2.20E-03
78GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.20E-03
79GO:0005977: glycogen metabolic process2.20E-03
80GO:0016024: CDP-diacylglycerol biosynthetic process2.35E-03
81GO:0009266: response to temperature stimulus3.03E-03
82GO:0010371: regulation of gibberellin biosynthetic process3.20E-03
83GO:0006020: inositol metabolic process3.20E-03
84GO:0009102: biotin biosynthetic process3.20E-03
85GO:0009152: purine ribonucleotide biosynthetic process3.20E-03
86GO:0046653: tetrahydrofolate metabolic process3.20E-03
87GO:0009052: pentose-phosphate shunt, non-oxidative branch3.20E-03
88GO:0033014: tetrapyrrole biosynthetic process3.20E-03
89GO:0010731: protein glutathionylation3.20E-03
90GO:0006424: glutamyl-tRNA aminoacylation3.20E-03
91GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.20E-03
92GO:1901332: negative regulation of lateral root development3.20E-03
93GO:0006145: purine nucleobase catabolic process3.20E-03
94GO:0009817: defense response to fungus, incompatible interaction3.47E-03
95GO:0010109: regulation of photosynthesis4.32E-03
96GO:0009765: photosynthesis, light harvesting4.32E-03
97GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.32E-03
98GO:0022622: root system development4.32E-03
99GO:0006021: inositol biosynthetic process4.32E-03
100GO:0010021: amylopectin biosynthetic process4.32E-03
101GO:0048511: rhythmic process5.11E-03
102GO:0016123: xanthophyll biosynthetic process5.55E-03
103GO:0000304: response to singlet oxygen5.55E-03
104GO:0080110: sporopollenin biosynthetic process5.55E-03
105GO:0046907: intracellular transport5.55E-03
106GO:0032543: mitochondrial translation5.55E-03
107GO:0006564: L-serine biosynthetic process5.55E-03
108GO:0016120: carotene biosynthetic process5.55E-03
109GO:0031365: N-terminal protein amino acid modification5.55E-03
110GO:0009107: lipoate biosynthetic process5.55E-03
111GO:0042549: photosystem II stabilization6.88E-03
112GO:0006655: phosphatidylglycerol biosynthetic process6.88E-03
113GO:0016554: cytidine to uridine editing6.88E-03
114GO:0032973: amino acid export6.88E-03
115GO:0046855: inositol phosphate dephosphorylation6.88E-03
116GO:0010310: regulation of hydrogen peroxide metabolic process8.32E-03
117GO:0034389: lipid particle organization8.32E-03
118GO:0030488: tRNA methylation8.32E-03
119GO:1901259: chloroplast rRNA processing8.32E-03
120GO:0055114: oxidation-reduction process8.61E-03
121GO:0009395: phospholipid catabolic process9.86E-03
122GO:0043090: amino acid import9.86E-03
123GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.86E-03
124GO:0035196: production of miRNAs involved in gene silencing by miRNA9.86E-03
125GO:0032880: regulation of protein localization9.86E-03
126GO:0032508: DNA duplex unwinding1.15E-02
127GO:2000070: regulation of response to water deprivation1.15E-02
128GO:0000105: histidine biosynthetic process1.15E-02
129GO:0022900: electron transport chain1.32E-02
130GO:0015996: chlorophyll catabolic process1.32E-02
131GO:0007186: G-protein coupled receptor signaling pathway1.32E-02
132GO:0017004: cytochrome complex assembly1.32E-02
133GO:0009821: alkaloid biosynthetic process1.50E-02
134GO:0010206: photosystem II repair1.50E-02
135GO:0080144: amino acid homeostasis1.50E-02
136GO:0043067: regulation of programmed cell death1.69E-02
137GO:0010267: production of ta-siRNAs involved in RNA interference1.69E-02
138GO:1900865: chloroplast RNA modification1.69E-02
139GO:0048354: mucilage biosynthetic process involved in seed coat development1.69E-02
140GO:0031425: chloroplast RNA processing1.69E-02
141GO:0009627: systemic acquired resistance1.70E-02
142GO:0005975: carbohydrate metabolic process1.77E-02
143GO:0010629: negative regulation of gene expression1.89E-02
144GO:0016311: dephosphorylation1.89E-02
145GO:0006535: cysteine biosynthetic process from serine1.89E-02
146GO:0006412: translation1.91E-02
147GO:0018298: protein-chromophore linkage1.99E-02
148GO:0009684: indoleacetic acid biosynthetic process2.10E-02
149GO:0019684: photosynthesis, light reaction2.10E-02
150GO:0008285: negative regulation of cell proliferation2.10E-02
151GO:0006415: translational termination2.10E-02
152GO:0007568: aging2.30E-02
153GO:0006790: sulfur compound metabolic process2.31E-02
154GO:0005983: starch catabolic process2.31E-02
155GO:0045037: protein import into chloroplast stroma2.31E-02
156GO:0045087: innate immune response2.52E-02
157GO:0009725: response to hormone2.53E-02
158GO:2000012: regulation of auxin polar transport2.53E-02
159GO:0006633: fatty acid biosynthetic process2.66E-02
160GO:0006413: translational initiation2.75E-02
161GO:0010143: cutin biosynthetic process2.76E-02
162GO:0010020: chloroplast fission2.76E-02
163GO:0007031: peroxisome organization2.99E-02
164GO:0046854: phosphatidylinositol phosphorylation2.99E-02
165GO:0007623: circadian rhythm3.00E-02
166GO:0006631: fatty acid metabolic process3.00E-02
167GO:0006071: glycerol metabolic process3.23E-02
168GO:0000162: tryptophan biosynthetic process3.23E-02
169GO:0006636: unsaturated fatty acid biosynthetic process3.23E-02
170GO:0019344: cysteine biosynthetic process3.48E-02
171GO:0006289: nucleotide-excision repair3.48E-02
172GO:0016042: lipid catabolic process3.56E-02
173GO:0009636: response to toxic substance3.66E-02
174GO:0016575: histone deacetylation3.73E-02
175GO:0007017: microtubule-based process3.73E-02
176GO:0010073: meristem maintenance3.73E-02
177GO:0061077: chaperone-mediated protein folding3.99E-02
178GO:0031408: oxylipin biosynthetic process3.99E-02
179GO:0016114: terpenoid biosynthetic process3.99E-02
180GO:0003333: amino acid transmembrane transport3.99E-02
181GO:0016226: iron-sulfur cluster assembly4.26E-02
182GO:0010017: red or far-red light signaling pathway4.26E-02
183GO:0031348: negative regulation of defense response4.26E-02
184GO:0080092: regulation of pollen tube growth4.26E-02
185GO:0019748: secondary metabolic process4.26E-02
186GO:0010227: floral organ abscission4.53E-02
187GO:0010584: pollen exine formation4.80E-02
188GO:0009306: protein secretion4.80E-02
189GO:0006457: protein folding4.86E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0019144: ADP-sugar diphosphatase activity0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
10GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
11GO:0043864: indoleacetamide hydrolase activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
14GO:0050613: delta14-sterol reductase activity0.00E+00
15GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0051721: protein phosphatase 2A binding0.00E+00
18GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
19GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
20GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
21GO:0042903: tubulin deacetylase activity0.00E+00
22GO:0045435: lycopene epsilon cyclase activity0.00E+00
23GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
24GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
25GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
26GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
27GO:0016851: magnesium chelatase activity1.06E-06
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.67E-05
29GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.88E-05
30GO:0030267: glyoxylate reductase (NADP) activity5.52E-05
31GO:0070402: NADPH binding5.52E-05
32GO:0001053: plastid sigma factor activity1.98E-04
33GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.98E-04
34GO:0016987: sigma factor activity1.98E-04
35GO:0016788: hydrolase activity, acting on ester bonds2.87E-04
36GO:0004040: amidase activity2.99E-04
37GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.18E-04
38GO:0005528: FK506 binding4.87E-04
39GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.54E-04
40GO:0005344: oxygen transporter activity6.22E-04
41GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.22E-04
42GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity6.22E-04
43GO:0005227: calcium activated cation channel activity6.22E-04
44GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity6.22E-04
45GO:0004856: xylulokinase activity6.22E-04
46GO:0009496: plastoquinol--plastocyanin reductase activity6.22E-04
47GO:0080042: ADP-glucose pyrophosphohydrolase activity6.22E-04
48GO:0050308: sugar-phosphatase activity6.22E-04
49GO:0019203: carbohydrate phosphatase activity6.22E-04
50GO:0005080: protein kinase C binding6.22E-04
51GO:0004325: ferrochelatase activity6.22E-04
52GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.22E-04
53GO:0042586: peptide deformylase activity6.22E-04
54GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity6.22E-04
55GO:0016784: 3-mercaptopyruvate sulfurtransferase activity6.22E-04
56GO:0016491: oxidoreductase activity7.56E-04
57GO:0004617: phosphoglycerate dehydrogenase activity1.34E-03
58GO:0016415: octanoyltransferase activity1.34E-03
59GO:0052832: inositol monophosphate 3-phosphatase activity1.34E-03
60GO:0015173: aromatic amino acid transmembrane transporter activity1.34E-03
61GO:0004817: cysteine-tRNA ligase activity1.34E-03
62GO:0016630: protochlorophyllide reductase activity1.34E-03
63GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.34E-03
64GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.34E-03
65GO:0004829: threonine-tRNA ligase activity1.34E-03
66GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.34E-03
67GO:0019156: isoamylase activity1.34E-03
68GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.34E-03
69GO:0008934: inositol monophosphate 1-phosphatase activity1.34E-03
70GO:0052833: inositol monophosphate 4-phosphatase activity1.34E-03
71GO:0050017: L-3-cyanoalanine synthase activity1.34E-03
72GO:0017118: lipoyltransferase activity1.34E-03
73GO:0042389: omega-3 fatty acid desaturase activity1.34E-03
74GO:0080041: ADP-ribose pyrophosphohydrolase activity1.34E-03
75GO:0048038: quinone binding1.54E-03
76GO:0015462: ATPase-coupled protein transmembrane transporter activity2.20E-03
77GO:0005504: fatty acid binding2.20E-03
78GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.20E-03
79GO:0003913: DNA photolyase activity2.20E-03
80GO:0004751: ribose-5-phosphate isomerase activity2.20E-03
81GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.20E-03
82GO:0008864: formyltetrahydrofolate deformylase activity2.20E-03
83GO:0031072: heat shock protein binding2.68E-03
84GO:0008266: poly(U) RNA binding3.03E-03
85GO:0016787: hydrolase activity3.16E-03
86GO:0035198: miRNA binding3.20E-03
87GO:0048487: beta-tubulin binding3.20E-03
88GO:0004792: thiosulfate sulfurtransferase activity3.20E-03
89GO:0016149: translation release factor activity, codon specific3.20E-03
90GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.20E-03
91GO:0043023: ribosomal large subunit binding3.20E-03
92GO:0004045: aminoacyl-tRNA hydrolase activity4.32E-03
93GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.32E-03
94GO:0070628: proteasome binding4.32E-03
95GO:0045430: chalcone isomerase activity4.32E-03
96GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity4.32E-03
97GO:0043495: protein anchor4.32E-03
98GO:0016279: protein-lysine N-methyltransferase activity4.32E-03
99GO:0019843: rRNA binding4.76E-03
100GO:0003993: acid phosphatase activity4.99E-03
101GO:0008374: O-acyltransferase activity5.55E-03
102GO:0003959: NADPH dehydrogenase activity5.55E-03
103GO:0005275: amine transmembrane transporter activity5.55E-03
104GO:0016773: phosphotransferase activity, alcohol group as acceptor5.55E-03
105GO:2001070: starch binding6.88E-03
106GO:0031593: polyubiquitin binding6.88E-03
107GO:0004556: alpha-amylase activity6.88E-03
108GO:0042578: phosphoric ester hydrolase activity6.88E-03
109GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.88E-03
110GO:0004124: cysteine synthase activity8.32E-03
111GO:0051920: peroxiredoxin activity8.32E-03
112GO:0004017: adenylate kinase activity8.32E-03
113GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.32E-03
114GO:0004144: diacylglycerol O-acyltransferase activity8.32E-03
115GO:0005261: cation channel activity8.32E-03
116GO:0004723: calcium-dependent protein serine/threonine phosphatase activity8.32E-03
117GO:0009927: histidine phosphotransfer kinase activity8.32E-03
118GO:0009881: photoreceptor activity9.86E-03
119GO:0019899: enzyme binding9.86E-03
120GO:0042802: identical protein binding1.12E-02
121GO:0005525: GTP binding1.13E-02
122GO:0016209: antioxidant activity1.15E-02
123GO:0008312: 7S RNA binding1.15E-02
124GO:0043022: ribosome binding1.15E-02
125GO:0004033: aldo-keto reductase (NADP) activity1.15E-02
126GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.32E-02
127GO:0008173: RNA methyltransferase activity1.32E-02
128GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.32E-02
129GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.50E-02
130GO:0003747: translation release factor activity1.50E-02
131GO:0016844: strictosidine synthase activity1.69E-02
132GO:0008236: serine-type peptidase activity1.89E-02
133GO:0047372: acylglycerol lipase activity2.10E-02
134GO:0005089: Rho guanyl-nucleotide exchange factor activity2.10E-02
135GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.30E-02
136GO:0052689: carboxylic ester hydrolase activity2.42E-02
137GO:0003746: translation elongation factor activity2.52E-02
138GO:0003725: double-stranded RNA binding2.53E-02
139GO:0004565: beta-galactosidase activity2.53E-02
140GO:0008083: growth factor activity2.76E-02
141GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.76E-02
142GO:0004364: glutathione transferase activity3.13E-02
143GO:0003723: RNA binding3.16E-02
144GO:0003735: structural constituent of ribosome3.23E-02
145GO:0004857: enzyme inhibitor activity3.48E-02
146GO:0004407: histone deacetylase activity3.48E-02
147GO:0043130: ubiquitin binding3.48E-02
148GO:0051536: iron-sulfur cluster binding3.48E-02
149GO:0051537: 2 iron, 2 sulfur cluster binding3.52E-02
150GO:0003743: translation initiation factor activity3.63E-02
151GO:0005509: calcium ion binding3.69E-02
152GO:0051087: chaperone binding3.73E-02
153GO:0051287: NAD binding3.93E-02
154GO:0009055: electron carrier activity4.10E-02
155GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.26E-02
156GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.38E-02
157GO:0022891: substrate-specific transmembrane transporter activity4.53E-02
158GO:0030570: pectate lyase activity4.53E-02
159GO:0003756: protein disulfide isomerase activity4.80E-02
<
Gene type



Gene DE type