co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G19500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0009606: tropism	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0090322: regulation of superoxide metabolic process	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
10	GO:0043972: histone H3-K23 acetylation	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0033206: meiotic cytokinesis	0.00E+00
13	GO:0019988: charged-tRNA amino acid modification	0.00E+00
14	GO:0090615: mitochondrial mRNA processing	0.00E+00
15	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
16	GO:0042793: transcription from plastid promoter	4.43E-06
17	GO:0006518: peptide metabolic process	2.69E-05
18	GO:0010305: leaf vascular tissue pattern formation	4.74E-05
19	GO:0009102: biotin biosynthetic process	5.86E-05
20	GO:2000038: regulation of stomatal complex development	1.03E-04
21	GO:1900864: mitochondrial RNA modification	1.03E-04
22	GO:0010588: cotyledon vascular tissue pattern formation	1.14E-04
23	GO:0009913: epidermal cell differentiation	2.27E-04
24	GO:2000033: regulation of seed dormancy process	3.06E-04
25	GO:0009658: chloroplast organization	3.24E-04
26	GO:0034757: negative regulation of iron ion transport	4.18E-04
27	GO:0048016: inositol phosphate-mediated signaling	4.18E-04
28	GO:0034970: histone H3-R2 methylation	4.18E-04
29	GO:0034972: histone H3-R26 methylation	4.18E-04
30	GO:0043971: histone H3-K18 acetylation	4.18E-04
31	GO:1903866: palisade mesophyll development	4.18E-04
32	GO:0010063: positive regulation of trichoblast fate specification	4.18E-04
33	GO:0034971: histone H3-R17 methylation	4.18E-04
34	GO:0010342: endosperm cellularization	4.18E-04
35	GO:0006430: lysyl-tRNA aminoacylation	4.18E-04
36	GO:0006355: regulation of transcription, DNA-templated	4.34E-04
37	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	4.94E-04
38	GO:0042255: ribosome assembly	4.94E-04
39	GO:0006353: DNA-templated transcription, termination	4.94E-04
40	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.45E-04
41	GO:0009734: auxin-activated signaling pathway	6.11E-04
42	GO:0006351: transcription, DNA-templated	7.90E-04
43	GO:1900865: chloroplast RNA modification	8.52E-04
44	GO:1901529: positive regulation of anion channel activity	9.05E-04
45	GO:0010569: regulation of double-strand break repair via homologous recombination	9.05E-04
46	GO:0048731: system development	9.05E-04
47	GO:0010271: regulation of chlorophyll catabolic process	9.05E-04
48	GO:0010541: acropetal auxin transport	9.05E-04
49	GO:0009662: etioplast organization	9.05E-04
50	GO:1900033: negative regulation of trichome patterning	9.05E-04
51	GO:0080009: mRNA methylation	9.05E-04
52	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	9.05E-04
53	GO:2000123: positive regulation of stomatal complex development	9.05E-04
54	GO:0048829: root cap development	9.91E-04
55	GO:0009416: response to light stimulus	1.02E-03
56	GO:0010029: regulation of seed germination	1.24E-03
57	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.47E-03
58	GO:0080117: secondary growth	1.47E-03
59	GO:0090391: granum assembly	1.47E-03
60	GO:0030029: actin filament-based process	1.47E-03
61	GO:0048481: plant ovule development	1.61E-03
62	GO:0010540: basipetal auxin transport	1.67E-03
63	GO:0080188: RNA-directed DNA methylation	1.87E-03
64	GO:0007276: gamete generation	2.13E-03
65	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.13E-03
66	GO:1902290: positive regulation of defense response to oomycetes	2.13E-03
67	GO:0010371: regulation of gibberellin biosynthetic process	2.13E-03
68	GO:0010071: root meristem specification	2.13E-03
69	GO:0033169: histone H3-K9 demethylation	2.13E-03
70	GO:0009863: salicylic acid mediated signaling pathway	2.31E-03
71	GO:0010187: negative regulation of seed germination	2.31E-03
72	GO:2000377: regulation of reactive oxygen species metabolic process	2.31E-03
73	GO:0003333: amino acid transmembrane transport	2.80E-03
74	GO:0000914: phragmoplast assembly	2.86E-03
75	GO:0006221: pyrimidine nucleotide biosynthetic process	2.86E-03
76	GO:0009956: radial pattern formation	2.86E-03
77	GO:0006808: regulation of nitrogen utilization	2.86E-03
78	GO:0006479: protein methylation	2.86E-03
79	GO:0048629: trichome patterning	2.86E-03
80	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.35E-03
81	GO:0042127: regulation of cell proliferation	3.64E-03
82	GO:0032957: inositol trisphosphate metabolic process	3.66E-03
83	GO:0032876: negative regulation of DNA endoreduplication	3.66E-03
84	GO:0030308: negative regulation of cell growth	3.66E-03
85	GO:0010375: stomatal complex patterning	3.66E-03
86	GO:0080110: sporopollenin biosynthetic process	3.66E-03
87	GO:0016558: protein import into peroxisome matrix	3.66E-03
88	GO:0048497: maintenance of floral organ identity	3.66E-03
89	GO:0010087: phloem or xylem histogenesis	4.27E-03
90	GO:0009959: negative gravitropism	4.52E-03
91	GO:0016554: cytidine to uridine editing	4.52E-03
92	GO:0042176: regulation of protein catabolic process	4.52E-03
93	GO:0010315: auxin efflux	4.52E-03
94	GO:0048831: regulation of shoot system development	4.52E-03
95	GO:0003006: developmental process involved in reproduction	4.52E-03
96	GO:0046855: inositol phosphate dephosphorylation	4.52E-03
97	GO:0009643: photosynthetic acclimation	4.52E-03
98	GO:0007018: microtubule-based movement	4.95E-03
99	GO:0048825: cotyledon development	5.31E-03
100	GO:0000911: cytokinesis by cell plate formation	5.46E-03
101	GO:0010067: procambium histogenesis	5.46E-03
102	GO:0048509: regulation of meristem development	5.46E-03
103	GO:2000037: regulation of stomatal complex patterning	5.46E-03
104	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.46E-03
105	GO:0010310: regulation of hydrogen peroxide metabolic process	5.46E-03
106	GO:0080156: mitochondrial mRNA modification	5.69E-03
107	GO:0048367: shoot system development	5.71E-03
108	GO:0009740: gibberellic acid mediated signaling pathway	6.43E-03
109	GO:0048437: floral organ development	6.45E-03
110	GO:0010098: suspensor development	6.45E-03
111	GO:0010103: stomatal complex morphogenesis	6.45E-03
112	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.45E-03
113	GO:0010374: stomatal complex development	6.45E-03
114	GO:0006955: immune response	6.45E-03
115	GO:0010090: trichome morphogenesis	6.48E-03
116	GO:0009828: plant-type cell wall loosening	6.90E-03
117	GO:0009642: response to light intensity	7.50E-03
118	GO:0046620: regulation of organ growth	7.50E-03
119	GO:0048766: root hair initiation	7.50E-03
120	GO:0010492: maintenance of shoot apical meristem identity	7.50E-03
121	GO:0009827: plant-type cell wall modification	8.61E-03
122	GO:0019430: removal of superoxide radicals	8.61E-03
123	GO:0007186: G-protein coupled receptor signaling pathway	8.61E-03
124	GO:0001510: RNA methylation	8.61E-03
125	GO:0010233: phloem transport	8.61E-03
126	GO:0010052: guard cell differentiation	8.61E-03
127	GO:0048574: long-day photoperiodism, flowering	8.61E-03
128	GO:0010100: negative regulation of photomorphogenesis	8.61E-03
129	GO:0032544: plastid translation	8.61E-03
130	GO:0007389: pattern specification process	8.61E-03
131	GO:0044030: regulation of DNA methylation	8.61E-03
132	GO:0048507: meristem development	9.78E-03
133	GO:0000373: Group II intron splicing	9.78E-03
134	GO:0048589: developmental growth	9.78E-03
135	GO:0000902: cell morphogenesis	9.78E-03
136	GO:0006468: protein phosphorylation	1.01E-02
137	GO:0009845: seed germination	1.02E-02
138	GO:0006349: regulation of gene expression by genetic imprinting	1.10E-02
139	GO:0016571: histone methylation	1.10E-02
140	GO:0016573: histone acetylation	1.10E-02
141	GO:1900426: positive regulation of defense response to bacterium	1.10E-02
142	GO:0045892: negative regulation of transcription, DNA-templated	1.13E-02
143	GO:0009793: embryo development ending in seed dormancy	1.15E-02
144	GO:0010218: response to far red light	1.19E-02
145	GO:0010048: vernalization response	1.23E-02
146	GO:0006535: cysteine biosynthetic process from serine	1.23E-02
147	GO:0006949: syncytium formation	1.23E-02
148	GO:0006865: amino acid transport	1.31E-02
149	GO:0040008: regulation of growth	1.32E-02
150	GO:0009750: response to fructose	1.36E-02
151	GO:0048765: root hair cell differentiation	1.36E-02
152	GO:0046856: phosphatidylinositol dephosphorylation	1.36E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	1.37E-02
154	GO:0008361: regulation of cell size	1.50E-02
155	GO:0012501: programmed cell death	1.50E-02
156	GO:0010152: pollen maturation	1.50E-02
157	GO:0010582: floral meristem determinacy	1.50E-02
158	GO:0030001: metal ion transport	1.56E-02
159	GO:0010102: lateral root morphogenesis	1.64E-02
160	GO:0009733: response to auxin	1.71E-02
161	GO:0009926: auxin polar transport	1.77E-02
162	GO:0048768: root hair cell tip growth	1.79E-02
163	GO:0048467: gynoecium development	1.79E-02
164	GO:0010020: chloroplast fission	1.79E-02
165	GO:0009933: meristem structural organization	1.79E-02
166	GO:0006270: DNA replication initiation	1.79E-02
167	GO:0009887: animal organ morphogenesis	1.79E-02
168	GO:0009266: response to temperature stimulus	1.79E-02
169	GO:0009825: multidimensional cell growth	1.94E-02
170	GO:0009965: leaf morphogenesis	1.99E-02
171	GO:0006636: unsaturated fatty acid biosynthetic process	2.09E-02
172	GO:0006260: DNA replication	2.15E-02
173	GO:0042538: hyperosmotic salinity response	2.23E-02
174	GO:0009664: plant-type cell wall organization	2.23E-02
175	GO:0019344: cysteine biosynthetic process	2.25E-02
176	GO:0080147: root hair cell development	2.25E-02
177	GO:0006338: chromatin remodeling	2.25E-02
178	GO:0006364: rRNA processing	2.39E-02
179	GO:0009736: cytokinin-activated signaling pathway	2.39E-02
180	GO:0006418: tRNA aminoacylation for protein translation	2.42E-02
181	GO:0006874: cellular calcium ion homeostasis	2.42E-02
182	GO:0016998: cell wall macromolecule catabolic process	2.59E-02
183	GO:0010431: seed maturation	2.59E-02
184	GO:0009909: regulation of flower development	2.65E-02
185	GO:0006970: response to osmotic stress	2.66E-02
186	GO:0071215: cellular response to abscisic acid stimulus	2.94E-02
187	GO:0010082: regulation of root meristem growth	2.94E-02
188	GO:0010584: pollen exine formation	3.11E-02
189	GO:0048443: stamen development	3.11E-02
190	GO:0006284: base-excision repair	3.11E-02
191	GO:0016569: covalent chromatin modification	3.21E-02
192	GO:0070417: cellular response to cold	3.30E-02
193	GO:0042631: cellular response to water deprivation	3.49E-02
194	GO:0042335: cuticle development	3.49E-02
195	GO:0080022: primary root development	3.49E-02
196	GO:0008033: tRNA processing	3.49E-02
197	GO:0010501: RNA secondary structure unwinding	3.49E-02
198	GO:0010051: xylem and phloem pattern formation	3.49E-02
199	GO:0009960: endosperm development	3.68E-02
200	GO:0009958: positive gravitropism	3.68E-02
201	GO:0048544: recognition of pollen	3.87E-02
202	GO:0009749: response to glucose	4.07E-02
203	GO:0006635: fatty acid beta-oxidation	4.27E-02
204	GO:0045893: positive regulation of transcription, DNA-templated	4.31E-02
205	GO:0010583: response to cyclopentenone	4.48E-02
206	GO:0009058: biosynthetic process	4.48E-02
207	GO:0032502: developmental process	4.48E-02
208	GO:0009630: gravitropism	4.48E-02
209	GO:0030163: protein catabolic process	4.68E-02
210	GO:0016567: protein ubiquitination	4.83E-02
211	GO:0019760: glucosinolate metabolic process	4.89E-02
212	GO:0009639: response to red or far red light	4.89E-02
213	GO:0010252: auxin homeostasis	4.89E-02
214	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0004141: dethiobiotin synthase activity	0.00E+00
4	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
5	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
6	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
7	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
8	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
9	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.66E-04
10	GO:0003727: single-stranded RNA binding	4.10E-04
11	GO:0004824: lysine-tRNA ligase activity	4.18E-04
12	GO:0042834: peptidoglycan binding	4.18E-04
13	GO:0046030: inositol trisphosphate phosphatase activity	4.18E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.18E-04
15	GO:0016274: protein-arginine N-methyltransferase activity	4.18E-04
16	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	4.18E-04
17	GO:0004016: adenylate cyclase activity	4.18E-04
18	GO:0000989: transcription factor activity, transcription factor binding	7.22E-04
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.05E-04
20	GO:0009884: cytokinin receptor activity	9.05E-04
21	GO:0035241: protein-arginine omega-N monomethyltransferase activity	9.05E-04
22	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	9.05E-04
23	GO:0032454: histone demethylase activity (H3-K9 specific)	9.05E-04
24	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	9.05E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	9.05E-04
26	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	9.05E-04
27	GO:0003777: microtubule motor activity	9.19E-04
28	GO:0003723: RNA binding	9.90E-04
29	GO:0043565: sequence-specific DNA binding	1.23E-03
30	GO:0017150: tRNA dihydrouridine synthase activity	1.47E-03
31	GO:0070181: small ribosomal subunit rRNA binding	1.47E-03
32	GO:0005034: osmosensor activity	1.47E-03
33	GO:0008469: histone-arginine N-methyltransferase activity	1.47E-03
34	GO:0004222: metalloendopeptidase activity	1.83E-03
35	GO:0009041: uridylate kinase activity	2.13E-03
36	GO:0003697: single-stranded DNA binding	2.19E-03
37	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.86E-03
38	GO:0010328: auxin influx transmembrane transporter activity	2.86E-03
39	GO:0010385: double-stranded methylated DNA binding	2.86E-03
40	GO:0004930: G-protein coupled receptor activity	2.86E-03
41	GO:0010011: auxin binding	2.86E-03
42	GO:0042803: protein homodimerization activity	3.13E-03
43	GO:0030570: pectate lyase activity	3.35E-03
44	GO:0008725: DNA-3-methyladenine glycosylase activity	3.66E-03
45	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.52E-03
46	GO:0004784: superoxide dismutase activity	4.52E-03
47	GO:0003688: DNA replication origin binding	4.52E-03
48	GO:0003690: double-stranded DNA binding	4.62E-03
49	GO:0003677: DNA binding	4.80E-03
50	GO:0019901: protein kinase binding	5.31E-03
51	GO:0019900: kinase binding	5.46E-03
52	GO:0004124: cysteine synthase activity	5.46E-03
53	GO:0008168: methyltransferase activity	5.69E-03
54	GO:0004674: protein serine/threonine kinase activity	5.97E-03
55	GO:0005200: structural constituent of cytoskeleton	7.34E-03
56	GO:0008289: lipid binding	7.43E-03
57	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.61E-03
58	GO:0019843: rRNA binding	9.25E-03
59	GO:0030170: pyridoxal phosphate binding	1.06E-02
60	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.09E-02
61	GO:0009672: auxin:proton symporter activity	1.10E-02
62	GO:0031490: chromatin DNA binding	1.10E-02
63	GO:0004871: signal transducer activity	1.18E-02
64	GO:0004673: protein histidine kinase activity	1.23E-02
65	GO:0008017: microtubule binding	1.48E-02
66	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.50E-02
67	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.50E-02
68	GO:0009982: pseudouridine synthase activity	1.64E-02
69	GO:0003725: double-stranded RNA binding	1.64E-02
70	GO:0010329: auxin efflux transmembrane transporter activity	1.64E-02
71	GO:0000155: phosphorelay sensor kinase activity	1.64E-02
72	GO:0005524: ATP binding	1.70E-02
73	GO:0004519: endonuclease activity	1.71E-02
74	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.79E-02
75	GO:0004970: ionotropic glutamate receptor activity	1.94E-02
76	GO:0005217: intracellular ligand-gated ion channel activity	1.94E-02
77	GO:0004190: aspartic-type endopeptidase activity	1.94E-02
78	GO:0015293: symporter activity	1.99E-02
79	GO:0043424: protein histidine kinase binding	2.42E-02
80	GO:0015079: potassium ion transmembrane transporter activity	2.42E-02
81	GO:0015171: amino acid transmembrane transporter activity	2.65E-02
82	GO:0004650: polygalacturonase activity	3.11E-02
83	GO:0005102: receptor binding	3.30E-02
84	GO:0018024: histone-lysine N-methyltransferase activity	3.30E-02
85	GO:0003779: actin binding	3.30E-02
86	GO:0004812: aminoacyl-tRNA ligase activity	3.30E-02
87	GO:0004402: histone acetyltransferase activity	3.49E-02
88	GO:0008026: ATP-dependent helicase activity	3.61E-02
89	GO:0001085: RNA polymerase II transcription factor binding	3.68E-02
90	GO:0050662: coenzyme binding	3.87E-02
91	GO:0005515: protein binding	3.88E-02
92	GO:0048038: quinone binding	4.27E-02
93	GO:0005215: transporter activity	4.41E-02
94	GO:0016829: lyase activity	4.59E-02