Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G17180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090615: mitochondrial mRNA processing0.00E+00
2GO:0000492: box C/D snoRNP assembly0.00E+00
3GO:0031222: arabinan catabolic process0.00E+00
4GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0009606: tropism0.00E+00
9GO:0090322: regulation of superoxide metabolic process0.00E+00
10GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
11GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
12GO:1903224: regulation of endodermal cell differentiation0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
15GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
16GO:0045184: establishment of protein localization0.00E+00
17GO:0009451: RNA modification4.49E-07
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.79E-06
19GO:0009658: chloroplast organization2.19E-05
20GO:0010569: regulation of double-strand break repair via homologous recombination2.36E-05
21GO:0006518: peptide metabolic process7.62E-05
22GO:0009657: plastid organization9.99E-05
23GO:1900865: chloroplast RNA modification1.71E-04
24GO:0051322: anaphase2.65E-04
25GO:2000038: regulation of stomatal complex development2.65E-04
26GO:0045037: protein import into chloroplast stroma3.22E-04
27GO:0009734: auxin-activated signaling pathway4.58E-04
28GO:0080188: RNA-directed DNA methylation5.26E-04
29GO:0009913: epidermal cell differentiation5.50E-04
30GO:0042793: transcription from plastid promoter5.50E-04
31GO:0009942: longitudinal axis specification7.28E-04
32GO:1901259: chloroplast rRNA processing7.28E-04
33GO:0009793: embryo development ending in seed dormancy7.44E-04
34GO:0006436: tryptophanyl-tRNA aminoacylation7.46E-04
35GO:0015904: tetracycline transport7.46E-04
36GO:0034757: negative regulation of iron ion transport7.46E-04
37GO:0042659: regulation of cell fate specification7.46E-04
38GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.46E-04
39GO:1905039: carboxylic acid transmembrane transport7.46E-04
40GO:1905200: gibberellic acid transmembrane transport7.46E-04
41GO:0070509: calcium ion import7.46E-04
42GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.46E-04
43GO:0080112: seed growth7.46E-04
44GO:0090558: plant epidermis development7.46E-04
45GO:0010063: positive regulation of trichoblast fate specification7.46E-04
46GO:0010480: microsporocyte differentiation7.46E-04
47GO:1903866: palisade mesophyll development7.46E-04
48GO:0035987: endodermal cell differentiation7.46E-04
49GO:0016998: cell wall macromolecule catabolic process8.89E-04
50GO:0006955: immune response9.27E-04
51GO:0048528: post-embryonic root development9.27E-04
52GO:0048437: floral organ development9.27E-04
53GO:0042127: regulation of cell proliferation1.24E-03
54GO:0007389: pattern specification process1.40E-03
55GO:2000123: positive regulation of stomatal complex development1.61E-03
56GO:1901529: positive regulation of anion channel activity1.61E-03
57GO:0048255: mRNA stabilization1.61E-03
58GO:1902326: positive regulation of chlorophyll biosynthetic process1.61E-03
59GO:0010271: regulation of chlorophyll catabolic process1.61E-03
60GO:0010541: acropetal auxin transport1.61E-03
61GO:0018026: peptidyl-lysine monomethylation1.61E-03
62GO:0009662: etioplast organization1.61E-03
63GO:1900033: negative regulation of trichome patterning1.61E-03
64GO:1904143: positive regulation of carotenoid biosynthetic process1.61E-03
65GO:0080009: mRNA methylation1.61E-03
66GO:0031425: chloroplast RNA processing2.00E-03
67GO:0006535: cysteine biosynthetic process from serine2.34E-03
68GO:0048829: root cap development2.34E-03
69GO:0009416: response to light stimulus2.48E-03
70GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.67E-03
71GO:0045910: negative regulation of DNA recombination2.67E-03
72GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.67E-03
73GO:0090708: specification of plant organ axis polarity2.67E-03
74GO:0080117: secondary growth2.67E-03
75GO:0044210: 'de novo' CTP biosynthetic process2.67E-03
76GO:0090391: granum assembly2.67E-03
77GO:0042780: tRNA 3'-end processing2.67E-03
78GO:0001578: microtubule bundle formation2.67E-03
79GO:0040008: regulation of growth2.90E-03
80GO:0010588: cotyledon vascular tissue pattern formation3.54E-03
81GO:0010371: regulation of gibberellin biosynthetic process3.88E-03
82GO:1902476: chloride transmembrane transport3.88E-03
83GO:0010071: root meristem specification3.88E-03
84GO:0051513: regulation of monopolar cell growth3.88E-03
85GO:0010239: chloroplast mRNA processing3.88E-03
86GO:0010306: rhamnogalacturonan II biosynthetic process3.88E-03
87GO:0007276: gamete generation3.88E-03
88GO:0019048: modulation by virus of host morphology or physiology3.88E-03
89GO:0046739: transport of virus in multicellular host3.88E-03
90GO:0051289: protein homotetramerization3.88E-03
91GO:0031048: chromatin silencing by small RNA3.88E-03
92GO:0016556: mRNA modification3.88E-03
93GO:0048481: plant ovule development4.97E-03
94GO:0006479: protein methylation5.24E-03
95GO:0048629: trichome patterning5.24E-03
96GO:1900864: mitochondrial RNA modification5.24E-03
97GO:0030104: water homeostasis5.24E-03
98GO:0006221: pyrimidine nucleotide biosynthetic process5.24E-03
99GO:0006021: inositol biosynthetic process5.24E-03
100GO:0051567: histone H3-K9 methylation5.24E-03
101GO:0006808: regulation of nitrogen utilization5.24E-03
102GO:0019344: cysteine biosynthetic process5.57E-03
103GO:0006418: tRNA aminoacylation for protein translation6.16E-03
104GO:0006865: amino acid transport6.36E-03
105GO:0009107: lipoate biosynthetic process6.75E-03
106GO:0016123: xanthophyll biosynthetic process6.75E-03
107GO:0080110: sporopollenin biosynthetic process6.75E-03
108GO:0032876: negative regulation of DNA endoreduplication6.75E-03
109GO:0030308: negative regulation of cell growth6.75E-03
110GO:0010375: stomatal complex patterning6.75E-03
111GO:0016120: carotene biosynthetic process6.75E-03
112GO:0048497: maintenance of floral organ identity6.75E-03
113GO:0003333: amino acid transmembrane transport6.78E-03
114GO:0010405: arabinogalactan protein metabolic process8.39E-03
115GO:0042549: photosystem II stabilization8.39E-03
116GO:0009959: negative gravitropism8.39E-03
117GO:0006655: phosphatidylglycerol biosynthetic process8.39E-03
118GO:0060918: auxin transport8.39E-03
119GO:1902456: regulation of stomatal opening8.39E-03
120GO:0048831: regulation of shoot system development8.39E-03
121GO:0016554: cytidine to uridine editing8.39E-03
122GO:0003006: developmental process involved in reproduction8.39E-03
123GO:0010315: auxin efflux8.39E-03
124GO:0016458: gene silencing8.39E-03
125GO:0009643: photosynthetic acclimation8.39E-03
126GO:0006014: D-ribose metabolic process8.39E-03
127GO:0018258: protein O-linked glycosylation via hydroxyproline8.39E-03
128GO:0009790: embryo development9.25E-03
129GO:2000037: regulation of stomatal complex patterning1.01E-02
130GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.01E-02
131GO:0010310: regulation of hydrogen peroxide metabolic process1.01E-02
132GO:2000067: regulation of root morphogenesis1.01E-02
133GO:0009955: adaxial/abaxial pattern specification1.01E-02
134GO:0009082: branched-chain amino acid biosynthetic process1.01E-02
135GO:0006458: 'de novo' protein folding1.01E-02
136GO:0042026: protein refolding1.01E-02
137GO:0048509: regulation of meristem development1.01E-02
138GO:0009099: valine biosynthetic process1.01E-02
139GO:0000226: microtubule cytoskeleton organization1.04E-02
140GO:0008033: tRNA processing1.04E-02
141GO:0010087: phloem or xylem histogenesis1.04E-02
142GO:0010305: leaf vascular tissue pattern formation1.12E-02
143GO:0048868: pollen tube development1.12E-02
144GO:0006468: protein phosphorylation1.17E-02
145GO:0006401: RNA catabolic process1.20E-02
146GO:0006821: chloride transport1.20E-02
147GO:0015937: coenzyme A biosynthetic process1.20E-02
148GO:0010103: stomatal complex morphogenesis1.20E-02
149GO:0048544: recognition of pollen1.21E-02
150GO:0048825: cotyledon development1.30E-02
151GO:0009736: cytokinin-activated signaling pathway1.37E-02
152GO:0006364: rRNA processing1.37E-02
153GO:0080156: mitochondrial mRNA modification1.39E-02
154GO:0000105: histidine biosynthetic process1.40E-02
155GO:0052543: callose deposition in cell wall1.40E-02
156GO:0006402: mRNA catabolic process1.40E-02
157GO:0001522: pseudouridine synthesis1.40E-02
158GO:0009642: response to light intensity1.40E-02
159GO:0042255: ribosome assembly1.40E-02
160GO:0046620: regulation of organ growth1.40E-02
161GO:0006353: DNA-templated transcription, termination1.40E-02
162GO:0048766: root hair initiation1.40E-02
163GO:0010492: maintenance of shoot apical meristem identity1.40E-02
164GO:0055075: potassium ion homeostasis1.40E-02
165GO:0010583: response to cyclopentenone1.49E-02
166GO:0019430: removal of superoxide radicals1.62E-02
167GO:0009097: isoleucine biosynthetic process1.62E-02
168GO:0010497: plasmodesmata-mediated intercellular transport1.62E-02
169GO:0032544: plastid translation1.62E-02
170GO:0010252: auxin homeostasis1.69E-02
171GO:0009828: plant-type cell wall loosening1.69E-02
172GO:0009733: response to auxin1.70E-02
173GO:0048367: shoot system development1.77E-02
174GO:0048316: seed development1.77E-02
175GO:0000902: cell morphogenesis1.84E-02
176GO:0006098: pentose-phosphate shunt1.84E-02
177GO:0048507: meristem development1.84E-02
178GO:0000373: Group II intron splicing1.84E-02
179GO:0048589: developmental growth1.84E-02
180GO:0016567: protein ubiquitination1.90E-02
181GO:0000910: cytokinesis1.91E-02
182GO:0009555: pollen development1.95E-02
183GO:0001666: response to hypoxia2.02E-02
184GO:0010027: thylakoid membrane organization2.02E-02
185GO:0042761: very long-chain fatty acid biosynthetic process2.07E-02
186GO:2000280: regulation of root development2.07E-02
187GO:0006349: regulation of gene expression by genetic imprinting2.07E-02
188GO:0009553: embryo sac development2.07E-02
189GO:0048364: root development2.10E-02
190GO:0006396: RNA processing2.23E-02
191GO:0045036: protein targeting to chloroplast2.31E-02
192GO:0006298: mismatch repair2.31E-02
193GO:0006949: syncytium formation2.31E-02
194GO:0006259: DNA metabolic process2.31E-02
195GO:0010048: vernalization response2.31E-02
196GO:0030422: production of siRNA involved in RNA interference2.31E-02
197GO:0010411: xyloglucan metabolic process2.38E-02
198GO:0006265: DNA topological change2.57E-02
199GO:0008285: negative regulation of cell proliferation2.57E-02
200GO:1903507: negative regulation of nucleic acid-templated transcription2.57E-02
201GO:0009750: response to fructose2.57E-02
202GO:0015770: sucrose transport2.57E-02
203GO:0048229: gametophyte development2.57E-02
204GO:0000160: phosphorelay signal transduction system2.77E-02
205GO:0008361: regulation of cell size2.83E-02
206GO:0006790: sulfur compound metabolic process2.83E-02
207GO:0012501: programmed cell death2.83E-02
208GO:0010152: pollen maturation2.83E-02
209GO:0016024: CDP-diacylglycerol biosynthetic process2.83E-02
210GO:0010582: floral meristem determinacy2.83E-02
211GO:0048366: leaf development2.94E-02
212GO:0010075: regulation of meristem growth3.10E-02
213GO:0006094: gluconeogenesis3.10E-02
214GO:0010102: lateral root morphogenesis3.10E-02
215GO:0009691: cytokinin biosynthetic process3.10E-02
216GO:0009887: animal organ morphogenesis3.37E-02
217GO:0010540: basipetal auxin transport3.37E-02
218GO:0009934: regulation of meristem structural organization3.37E-02
219GO:0048467: gynoecium development3.37E-02
220GO:0010207: photosystem II assembly3.37E-02
221GO:0010020: chloroplast fission3.37E-02
222GO:0046854: phosphatidylinositol phosphorylation3.66E-02
223GO:0009901: anther dehiscence3.66E-02
224GO:0070588: calcium ion transmembrane transport3.66E-02
225GO:0006508: proteolysis3.92E-02
226GO:0006833: water transport3.95E-02
227GO:0080147: root hair cell development4.26E-02
228GO:0000027: ribosomal large subunit assembly4.26E-02
229GO:0009926: auxin polar transport4.31E-02
230GO:0008283: cell proliferation4.31E-02
231GO:0042546: cell wall biogenesis4.48E-02
232GO:0010073: meristem maintenance4.57E-02
233GO:0051302: regulation of cell division4.57E-02
234GO:0019953: sexual reproduction4.57E-02
235GO:0010431: seed maturation4.88E-02
236GO:0061077: chaperone-mediated protein folding4.88E-02
237GO:0006306: DNA methylation4.88E-02
238GO:0015992: proton transport4.88E-02
RankGO TermAdjusted P value
1GO:0016018: cyclosporin A binding0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0042834: peptidoglycan binding0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0004519: endonuclease activity2.35E-09
9GO:0003723: RNA binding3.04E-06
10GO:0017150: tRNA dihydrouridine synthase activity7.62E-05
11GO:0008173: RNA methyltransferase activity9.99E-05
12GO:0001872: (1->3)-beta-D-glucan binding1.57E-04
13GO:0019843: rRNA binding4.18E-04
14GO:0004124: cysteine synthase activity7.28E-04
15GO:0004654: polyribonucleotide nucleotidyltransferase activity7.46E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity7.46E-04
17GO:0004016: adenylate cyclase activity7.46E-04
18GO:1905201: gibberellin transmembrane transporter activity7.46E-04
19GO:0004632: phosphopantothenate--cysteine ligase activity7.46E-04
20GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.46E-04
21GO:0016274: protein-arginine N-methyltransferase activity7.46E-04
22GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.46E-04
23GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.46E-04
24GO:0004830: tryptophan-tRNA ligase activity7.46E-04
25GO:0052381: tRNA dimethylallyltransferase activity7.46E-04
26GO:0004160: dihydroxy-acid dehydratase activity7.46E-04
27GO:0004222: metalloendopeptidase activity1.04E-03
28GO:0016415: octanoyltransferase activity1.61E-03
29GO:0052832: inositol monophosphate 3-phosphatase activity1.61E-03
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.61E-03
31GO:0008805: carbon-monoxide oxygenase activity1.61E-03
32GO:0008934: inositol monophosphate 1-phosphatase activity1.61E-03
33GO:0008493: tetracycline transporter activity1.61E-03
34GO:0052833: inositol monophosphate 4-phosphatase activity1.61E-03
35GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.61E-03
36GO:0009884: cytokinin receptor activity1.61E-03
37GO:0017118: lipoyltransferase activity1.61E-03
38GO:0009672: auxin:proton symporter activity2.00E-03
39GO:0019901: protein kinase binding2.01E-03
40GO:0042781: 3'-tRNA processing endoribonuclease activity2.67E-03
41GO:0016805: dipeptidase activity2.67E-03
42GO:0005034: osmosensor activity2.67E-03
43GO:0003725: double-stranded RNA binding3.54E-03
44GO:0010329: auxin efflux transmembrane transporter activity3.54E-03
45GO:0008508: bile acid:sodium symporter activity3.88E-03
46GO:0009678: hydrogen-translocating pyrophosphatase activity3.88E-03
47GO:0003883: CTP synthase activity3.88E-03
48GO:0009041: uridylate kinase activity3.88E-03
49GO:0035197: siRNA binding3.88E-03
50GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.00E-03
51GO:0016279: protein-lysine N-methyltransferase activity5.24E-03
52GO:0010011: auxin binding5.24E-03
53GO:0016836: hydro-lyase activity5.24E-03
54GO:0010328: auxin influx transmembrane transporter activity5.24E-03
55GO:0005253: anion channel activity5.24E-03
56GO:0046556: alpha-L-arabinofuranosidase activity5.24E-03
57GO:0004930: G-protein coupled receptor activity5.24E-03
58GO:0008725: DNA-3-methyladenine glycosylase activity6.75E-03
59GO:0004888: transmembrane signaling receptor activity6.75E-03
60GO:0005275: amine transmembrane transporter activity6.75E-03
61GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.75E-03
62GO:0030570: pectate lyase activity8.12E-03
63GO:0005247: voltage-gated chloride channel activity8.39E-03
64GO:0030983: mismatched DNA binding8.39E-03
65GO:0004605: phosphatidate cytidylyltransferase activity8.39E-03
66GO:1990714: hydroxyproline O-galactosyltransferase activity8.39E-03
67GO:0004332: fructose-bisphosphate aldolase activity8.39E-03
68GO:0004784: superoxide dismutase activity8.39E-03
69GO:0003727: single-stranded RNA binding8.84E-03
70GO:0004674: protein serine/threonine kinase activity9.57E-03
71GO:0004812: aminoacyl-tRNA ligase activity9.59E-03
72GO:0008195: phosphatidate phosphatase activity1.01E-02
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.01E-02
74GO:0016832: aldehyde-lyase activity1.01E-02
75GO:0004747: ribokinase activity1.01E-02
76GO:0019900: kinase binding1.01E-02
77GO:0004427: inorganic diphosphatase activity1.20E-02
78GO:0030515: snoRNA binding1.20E-02
79GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.28E-02
80GO:0016762: xyloglucan:xyloglucosyl transferase activity1.39E-02
81GO:0008865: fructokinase activity1.40E-02
82GO:0015171: amino acid transmembrane transporter activity1.56E-02
83GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.62E-02
84GO:0008237: metallopeptidase activity1.79E-02
85GO:0005524: ATP binding2.09E-02
86GO:0008168: methyltransferase activity2.18E-02
87GO:0004673: protein histidine kinase activity2.31E-02
88GO:0016798: hydrolase activity, acting on glycosyl bonds2.38E-02
89GO:0030247: polysaccharide binding2.38E-02
90GO:0044183: protein binding involved in protein folding2.57E-02
91GO:0008515: sucrose transmembrane transporter activity2.57E-02
92GO:0004521: endoribonuclease activity2.83E-02
93GO:0004672: protein kinase activity3.09E-02
94GO:0031072: heat shock protein binding3.10E-02
95GO:0000155: phosphorelay sensor kinase activity3.10E-02
96GO:0005262: calcium channel activity3.10E-02
97GO:0009982: pseudouridine synthase activity3.10E-02
98GO:0000175: 3'-5'-exoribonuclease activity3.10E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity3.10E-02
100GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.35E-02
101GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.35E-02
102GO:0004190: aspartic-type endopeptidase activity3.66E-02
103GO:0051119: sugar transmembrane transporter activity3.66E-02
104GO:0051539: 4 iron, 4 sulfur cluster binding3.81E-02
105GO:0005215: transporter activity3.82E-02
106GO:0016887: ATPase activity4.06E-02
107GO:0003714: transcription corepressor activity4.26E-02
108GO:0004185: serine-type carboxypeptidase activity4.31E-02
109GO:0004871: signal transducer activity4.40E-02
110GO:0008017: microtubule binding4.49E-02
111GO:0043424: protein histidine kinase binding4.57E-02
112GO:0043621: protein self-association4.65E-02
113GO:0015293: symporter activity4.83E-02
114GO:0008408: 3'-5' exonuclease activity4.88E-02
115GO:0004176: ATP-dependent peptidase activity4.88E-02
116GO:0033612: receptor serine/threonine kinase binding4.88E-02
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Gene type



Gene DE type