co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	1.82E-12
3	GO:0015979: photosynthesis	1.27E-09
4	GO:0010207: photosystem II assembly	2.61E-08
5	GO:0009768: photosynthesis, light harvesting in photosystem I	4.42E-06
6	GO:0009645: response to low light intensity stimulus	4.76E-06
7	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.07E-05
8	GO:0009773: photosynthetic electron transport in photosystem I	3.26E-05
9	GO:0009735: response to cytokinin	4.34E-05
10	GO:0006094: gluconeogenesis	5.03E-05
11	GO:0010021: amylopectin biosynthetic process	5.52E-05
12	GO:0018298: protein-chromophore linkage	8.63E-05
13	GO:0042549: photosystem II stabilization	1.27E-04
14	GO:0010189: vitamin E biosynthetic process	1.74E-04
15	GO:0048564: photosystem I assembly	2.87E-04
16	GO:0043953: protein transport by the Tat complex	2.89E-04
17	GO:0015801: aromatic amino acid transport	2.89E-04
18	GO:0065002: intracellular protein transmembrane transport	2.89E-04
19	GO:0043087: regulation of GTPase activity	2.89E-04
20	GO:0034337: RNA folding	2.89E-04
21	GO:0019252: starch biosynthetic process	3.32E-04
22	GO:0032259: methylation	3.33E-04
23	GO:0032544: plastid translation	3.53E-04
24	GO:0006412: translation	5.36E-04
25	GO:0009658: chloroplast organization	5.47E-04
26	GO:0010027: thylakoid membrane organization	5.86E-04
27	GO:0035304: regulation of protein dephosphorylation	6.34E-04
28	GO:0071457: cellular response to ozone	6.34E-04
29	GO:0000256: allantoin catabolic process	6.34E-04
30	GO:0006729: tetrahydrobiopterin biosynthetic process	6.34E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.34E-04
32	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.34E-04
33	GO:0018119: peptidyl-cysteine S-nitrosylation	6.77E-04
34	GO:0009767: photosynthetic electron transport chain	8.76E-04
35	GO:0010218: response to far red light	9.24E-04
36	GO:0019253: reductive pentose-phosphate cycle	9.86E-04
37	GO:0006000: fructose metabolic process	1.03E-03
38	GO:0090391: granum assembly	1.03E-03
39	GO:0006518: peptide metabolic process	1.03E-03
40	GO:0010136: ureide catabolic process	1.03E-03
41	GO:0044375: regulation of peroxisome size	1.03E-03
42	GO:0005977: glycogen metabolic process	1.03E-03
43	GO:0009637: response to blue light	1.10E-03
44	GO:0006145: purine nucleobase catabolic process	1.47E-03
45	GO:1901332: negative regulation of lateral root development	1.47E-03
46	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.47E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.47E-03
48	GO:0071484: cellular response to light intensity	1.47E-03
49	GO:0010114: response to red light	1.51E-03
50	GO:0009644: response to high light intensity	1.67E-03
51	GO:0006109: regulation of carbohydrate metabolic process	1.97E-03
52	GO:0015994: chlorophyll metabolic process	1.97E-03
53	GO:0006536: glutamate metabolic process	1.97E-03
54	GO:0010600: regulation of auxin biosynthetic process	1.97E-03
55	GO:0071486: cellular response to high light intensity	1.97E-03
56	GO:0009765: photosynthesis, light harvesting	1.97E-03
57	GO:0055114: oxidation-reduction process	2.13E-03
58	GO:0071493: cellular response to UV-B	2.52E-03
59	GO:0000304: response to singlet oxygen	2.52E-03
60	GO:0043097: pyrimidine nucleoside salvage	2.52E-03
61	GO:0010236: plastoquinone biosynthetic process	2.52E-03
62	GO:0009107: lipoate biosynthetic process	2.52E-03
63	GO:0042254: ribosome biogenesis	2.69E-03
64	GO:0009409: response to cold	2.76E-03
65	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.11E-03
66	GO:0006206: pyrimidine nucleobase metabolic process	3.11E-03
67	GO:0010190: cytochrome b6f complex assembly	3.11E-03
68	GO:0006810: transport	3.30E-03
69	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.74E-03
70	GO:1901259: chloroplast rRNA processing	3.74E-03
71	GO:0045926: negative regulation of growth	3.74E-03
72	GO:0010196: nonphotochemical quenching	4.41E-03
73	GO:1900057: positive regulation of leaf senescence	4.41E-03
74	GO:0010161: red light signaling pathway	4.41E-03
75	GO:0010928: regulation of auxin mediated signaling pathway	5.12E-03
76	GO:0005978: glycogen biosynthetic process	5.12E-03
77	GO:0042255: ribosome assembly	5.12E-03
78	GO:0006353: DNA-templated transcription, termination	5.12E-03
79	GO:0009704: de-etiolation	5.12E-03
80	GO:0016559: peroxisome fission	5.12E-03
81	GO:0019430: removal of superoxide radicals	5.87E-03
82	GO:0006526: arginine biosynthetic process	5.87E-03
83	GO:0006002: fructose 6-phosphate metabolic process	5.87E-03
84	GO:0071482: cellular response to light stimulus	5.87E-03
85	GO:0006098: pentose-phosphate shunt	6.65E-03
86	GO:0006783: heme biosynthetic process	6.65E-03
87	GO:0006779: porphyrin-containing compound biosynthetic process	7.48E-03
88	GO:0005982: starch metabolic process	7.48E-03
89	GO:0010205: photoinhibition	7.48E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	8.33E-03
91	GO:0009299: mRNA transcription	8.33E-03
92	GO:0019684: photosynthesis, light reaction	9.22E-03
93	GO:0043085: positive regulation of catalytic activity	9.22E-03
94	GO:0006352: DNA-templated transcription, initiation	9.22E-03
95	GO:0006807: nitrogen compound metabolic process	1.11E-02
96	GO:0005986: sucrose biosynthetic process	1.11E-02
97	GO:0009266: response to temperature stimulus	1.21E-02
98	GO:0007031: peroxisome organization	1.31E-02
99	GO:0006636: unsaturated fatty acid biosynthetic process	1.41E-02
100	GO:0019762: glucosinolate catabolic process	1.41E-02
101	GO:0042742: defense response to bacterium	1.48E-02
102	GO:0006979: response to oxidative stress	1.50E-02
103	GO:0006096: glycolytic process	1.63E-02
104	GO:0031408: oxylipin biosynthetic process	1.75E-02
105	GO:0003333: amino acid transmembrane transport	1.75E-02
106	GO:0010017: red or far-red light signaling pathway	1.86E-02
107	GO:0016226: iron-sulfur cluster assembly	1.86E-02
108	GO:0080092: regulation of pollen tube growth	1.86E-02
109	GO:0009625: response to insect	1.98E-02
110	GO:0019722: calcium-mediated signaling	2.10E-02
111	GO:0009561: megagametogenesis	2.10E-02
112	GO:0006606: protein import into nucleus	2.35E-02
113	GO:0071472: cellular response to salt stress	2.48E-02
114	GO:0006520: cellular amino acid metabolic process	2.48E-02
115	GO:0006662: glycerol ether metabolic process	2.48E-02
116	GO:0009741: response to brassinosteroid	2.48E-02
117	GO:0010583: response to cyclopentenone	3.02E-02
118	GO:0032502: developmental process	3.02E-02
119	GO:0009567: double fertilization forming a zygote and endosperm	3.31E-02
120	GO:0007267: cell-cell signaling	3.45E-02
121	GO:0042128: nitrate assimilation	4.05E-02
122	GO:0006950: response to stress	4.21E-02
123	GO:0009817: defense response to fungus, incompatible interaction	4.53E-02
124	GO:0009813: flavonoid biosynthetic process	4.69E-02
125	GO:0010311: lateral root formation	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
8	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
11	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
12	GO:0008974: phosphoribulokinase activity	0.00E+00
13	GO:0046408: chlorophyll synthetase activity	0.00E+00
14	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
15	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
16	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
17	GO:0019843: rRNA binding	2.03E-09
18	GO:0031409: pigment binding	2.78E-06
19	GO:0003735: structural constituent of ribosome	1.23E-05
20	GO:0016851: magnesium chelatase activity	3.07E-05
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.52E-05
22	GO:0016168: chlorophyll binding	5.80E-05
23	GO:0004332: fructose-bisphosphate aldolase activity	1.27E-04
24	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.89E-04
25	GO:0010242: oxygen evolving activity	2.89E-04
26	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.89E-04
27	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.89E-04
28	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.89E-04
29	GO:0048038: quinone binding	3.64E-04
30	GO:0008168: methyltransferase activity	5.11E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.34E-04
32	GO:0018708: thiol S-methyltransferase activity	6.34E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.34E-04
34	GO:0019172: glyoxalase III activity	6.34E-04
35	GO:0019156: isoamylase activity	6.34E-04
36	GO:0008883: glutamyl-tRNA reductase activity	6.34E-04
37	GO:0047746: chlorophyllase activity	6.34E-04
38	GO:0042389: omega-3 fatty acid desaturase activity	6.34E-04
39	GO:0080041: ADP-ribose pyrophosphohydrolase activity	6.34E-04
40	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.34E-04
41	GO:0015173: aromatic amino acid transmembrane transporter activity	6.34E-04
42	GO:0031072: heat shock protein binding	8.76E-04
43	GO:0008266: poly(U) RNA binding	9.86E-04
44	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.03E-03
45	GO:0043169: cation binding	1.03E-03
46	GO:0016992: lipoate synthase activity	1.03E-03
47	GO:0005504: fatty acid binding	1.03E-03
48	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.03E-03
49	GO:0005528: FK506 binding	1.35E-03
50	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.47E-03
51	GO:0008097: 5S rRNA binding	1.47E-03
52	GO:0004351: glutamate decarboxylase activity	1.47E-03
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.67E-03
54	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.84E-03
55	GO:0008453: alanine-glyoxylate transaminase activity	1.97E-03
56	GO:0016987: sigma factor activity	1.97E-03
57	GO:0045430: chalcone isomerase activity	1.97E-03
58	GO:0001053: plastid sigma factor activity	1.97E-03
59	GO:0005275: amine transmembrane transporter activity	2.52E-03
60	GO:0004784: superoxide dismutase activity	3.11E-03
61	GO:0042578: phosphoric ester hydrolase activity	3.11E-03
62	GO:0004556: alpha-amylase activity	3.11E-03
63	GO:0004462: lactoylglutathione lyase activity	3.11E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.74E-03
65	GO:0004849: uridine kinase activity	3.74E-03
66	GO:0051920: peroxiredoxin activity	3.74E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	5.12E-03
68	GO:0016209: antioxidant activity	5.12E-03
69	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.87E-03
70	GO:0071949: FAD binding	6.65E-03
71	GO:0004222: metalloendopeptidase activity	6.85E-03
72	GO:0016787: hydrolase activity	7.46E-03
73	GO:0003746: translation elongation factor activity	7.88E-03
74	GO:0016491: oxidoreductase activity	8.01E-03
75	GO:0030234: enzyme regulator activity	8.33E-03
76	GO:0008047: enzyme activator activity	8.33E-03
77	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.22E-03
78	GO:0042802: identical protein binding	9.40E-03
79	GO:0004565: beta-galactosidase activity	1.11E-02
80	GO:0003690: double-stranded DNA binding	1.42E-02
81	GO:0051536: iron-sulfur cluster binding	1.52E-02
82	GO:0004857: enzyme inhibitor activity	1.52E-02
83	GO:0051082: unfolded protein binding	1.96E-02
84	GO:0003727: single-stranded RNA binding	2.10E-02
85	GO:0047134: protein-disulfide reductase activity	2.23E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	2.61E-02
87	GO:0009055: electron carrier activity	2.83E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.16E-02
89	GO:0005509: calcium ion binding	3.93E-02
90	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.37E-02
91	GO:0016887: ATPase activity	4.46E-02
92	GO:0005096: GTPase activator activity	4.69E-02