Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G14560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902458: positive regulation of stomatal opening0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0043488: regulation of mRNA stability0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0046460: neutral lipid biosynthetic process0.00E+00
9GO:0031054: pre-miRNA processing0.00E+00
10GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
11GO:0090279: regulation of calcium ion import0.00E+00
12GO:0031116: positive regulation of microtubule polymerization0.00E+00
13GO:0042820: vitamin B6 catabolic process0.00E+00
14GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0042817: pyridoxal metabolic process0.00E+00
18GO:0071474: cellular hyperosmotic response0.00E+00
19GO:0006114: glycerol biosynthetic process0.00E+00
20GO:0018023: peptidyl-lysine trimethylation0.00E+00
21GO:1903426: regulation of reactive oxygen species biosynthetic process2.15E-05
22GO:0010207: photosystem II assembly2.83E-05
23GO:0006415: translational termination2.39E-04
24GO:0032543: mitochondrial translation3.66E-04
25GO:0045038: protein import into chloroplast thylakoid membrane3.66E-04
26GO:0009658: chloroplast organization4.43E-04
27GO:0042372: phylloquinone biosynthetic process6.75E-04
28GO:0030488: tRNA methylation6.75E-04
29GO:0005991: trehalose metabolic process7.09E-04
30GO:0006747: FAD biosynthetic process7.09E-04
31GO:0006419: alanyl-tRNA aminoacylation7.09E-04
32GO:0000476: maturation of 4.5S rRNA7.09E-04
33GO:0009443: pyridoxal 5'-phosphate salvage7.09E-04
34GO:0000967: rRNA 5'-end processing7.09E-04
35GO:2000025: regulation of leaf formation7.09E-04
36GO:0000012: single strand break repair7.09E-04
37GO:0043266: regulation of potassium ion transport7.09E-04
38GO:0006659: phosphatidylserine biosynthetic process7.09E-04
39GO:0042547: cell wall modification involved in multidimensional cell growth7.09E-04
40GO:0042371: vitamin K biosynthetic process7.09E-04
41GO:0043087: regulation of GTPase activity7.09E-04
42GO:2000021: regulation of ion homeostasis7.09E-04
43GO:0000105: histidine biosynthetic process1.07E-03
44GO:2000070: regulation of response to water deprivation1.07E-03
45GO:0070413: trehalose metabolism in response to stress1.07E-03
46GO:0032544: plastid translation1.30E-03
47GO:0006568: tryptophan metabolic process1.53E-03
48GO:0015804: neutral amino acid transport1.53E-03
49GO:0051262: protein tetramerization1.53E-03
50GO:0034470: ncRNA processing1.53E-03
51GO:0006739: NADP metabolic process1.53E-03
52GO:1900871: chloroplast mRNA modification1.53E-03
53GO:0030187: melatonin biosynthetic process1.53E-03
54GO:0007154: cell communication1.53E-03
55GO:0018026: peptidyl-lysine monomethylation1.53E-03
56GO:0090342: regulation of cell aging1.53E-03
57GO:1900033: negative regulation of trichome patterning1.53E-03
58GO:0034755: iron ion transmembrane transport1.53E-03
59GO:0006423: cysteinyl-tRNA aminoacylation1.53E-03
60GO:0006435: threonyl-tRNA aminoacylation1.53E-03
61GO:0010206: photosystem II repair1.56E-03
62GO:1900865: chloroplast RNA modification1.85E-03
63GO:0006782: protoporphyrinogen IX biosynthetic process2.17E-03
64GO:0009684: indoleacetic acid biosynthetic process2.51E-03
65GO:0009773: photosynthetic electron transport in photosystem I2.51E-03
66GO:0040008: regulation of growth2.53E-03
67GO:0033591: response to L-ascorbic acid2.53E-03
68GO:0048281: inflorescence morphogenesis2.53E-03
69GO:0006954: inflammatory response2.53E-03
70GO:0010589: leaf proximal/distal pattern formation2.53E-03
71GO:0009405: pathogenesis2.53E-03
72GO:0080055: low-affinity nitrate transport2.53E-03
73GO:0009150: purine ribonucleotide metabolic process2.53E-03
74GO:0051604: protein maturation2.53E-03
75GO:0015940: pantothenate biosynthetic process2.53E-03
76GO:0001578: microtubule bundle formation2.53E-03
77GO:0045493: xylan catabolic process2.53E-03
78GO:0045037: protein import into chloroplast stroma2.88E-03
79GO:0010027: thylakoid membrane organization3.19E-03
80GO:2000012: regulation of auxin polar transport3.27E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.68E-03
82GO:0006166: purine ribonucleoside salvage3.68E-03
83GO:0009627: systemic acquired resistance3.68E-03
84GO:0009102: biotin biosynthetic process3.68E-03
85GO:0009647: skotomorphogenesis3.68E-03
86GO:0009226: nucleotide-sugar biosynthetic process3.68E-03
87GO:0008615: pyridoxine biosynthetic process3.68E-03
88GO:0006424: glutamyl-tRNA aminoacylation3.68E-03
89GO:0046739: transport of virus in multicellular host3.68E-03
90GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.68E-03
91GO:0006168: adenine salvage3.68E-03
92GO:0006164: purine nucleotide biosynthetic process3.68E-03
93GO:0010148: transpiration3.68E-03
94GO:0015995: chlorophyll biosynthetic process3.94E-03
95GO:0000162: tryptophan biosynthetic process4.64E-03
96GO:0048629: trichome patterning4.97E-03
97GO:0010109: regulation of photosynthesis4.97E-03
98GO:0051322: anaphase4.97E-03
99GO:0009765: photosynthesis, light harvesting4.97E-03
100GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.97E-03
101GO:0022622: root system development4.97E-03
102GO:0006021: inositol biosynthetic process4.97E-03
103GO:0007020: microtubule nucleation4.97E-03
104GO:0006734: NADH metabolic process4.97E-03
105GO:0005992: trehalose biosynthetic process5.15E-03
106GO:0007010: cytoskeleton organization5.15E-03
107GO:0006418: tRNA aminoacylation for protein translation5.69E-03
108GO:0009733: response to auxin5.74E-03
109GO:0016123: xanthophyll biosynthetic process6.39E-03
110GO:0044209: AMP salvage6.39E-03
111GO:0046785: microtubule polymerization6.39E-03
112GO:0016120: carotene biosynthetic process6.39E-03
113GO:0010236: plastoquinone biosynthetic process6.39E-03
114GO:0009793: embryo development ending in seed dormancy7.11E-03
115GO:0042549: photosystem II stabilization7.94E-03
116GO:0010264: myo-inositol hexakisphosphate biosynthetic process7.94E-03
117GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.94E-03
118GO:0010190: cytochrome b6f complex assembly7.94E-03
119GO:0016554: cytidine to uridine editing7.94E-03
120GO:0009920: cell plate formation involved in plant-type cell wall biogenesis7.94E-03
121GO:0032973: amino acid export7.94E-03
122GO:0000741: karyogamy7.94E-03
123GO:0006413: translational initiation9.53E-03
124GO:0080086: stamen filament development9.60E-03
125GO:0009648: photoperiodism9.60E-03
126GO:0010310: regulation of hydrogen peroxide metabolic process9.60E-03
127GO:0009955: adaxial/abaxial pattern specification9.60E-03
128GO:0048280: vesicle fusion with Golgi apparatus9.60E-03
129GO:0034389: lipid particle organization9.60E-03
130GO:1901259: chloroplast rRNA processing9.60E-03
131GO:0009958: positive gravitropism1.04E-02
132GO:0010197: polar nucleus fusion1.04E-02
133GO:0010182: sugar mediated signaling pathway1.04E-02
134GO:0032880: regulation of protein localization1.14E-02
135GO:0009395: phospholipid catabolic process1.14E-02
136GO:0048528: post-embryonic root development1.14E-02
137GO:0009772: photosynthetic electron transport in photosystem II1.14E-02
138GO:0043090: amino acid import1.14E-02
139GO:0070370: cellular heat acclimation1.14E-02
140GO:0010196: nonphotochemical quenching1.14E-02
141GO:0006400: tRNA modification1.14E-02
142GO:0035196: production of miRNAs involved in gene silencing by miRNA1.14E-02
143GO:0010103: stomatal complex morphogenesis1.14E-02
144GO:0009231: riboflavin biosynthetic process1.33E-02
145GO:0052543: callose deposition in cell wall1.33E-02
146GO:0006605: protein targeting1.33E-02
147GO:0010078: maintenance of root meristem identity1.33E-02
148GO:0046620: regulation of organ growth1.33E-02
149GO:0016032: viral process1.37E-02
150GO:1901657: glycosyl compound metabolic process1.46E-02
151GO:0001558: regulation of cell growth1.53E-02
152GO:0022900: electron transport chain1.53E-02
153GO:0015996: chlorophyll catabolic process1.53E-02
154GO:0007186: G-protein coupled receptor signaling pathway1.53E-02
155GO:0009657: plastid organization1.53E-02
156GO:0043562: cellular response to nitrogen levels1.53E-02
157GO:0015780: nucleotide-sugar transport1.74E-02
158GO:0009821: alkaloid biosynthetic process1.74E-02
159GO:0080144: amino acid homeostasis1.74E-02
160GO:0019432: triglyceride biosynthetic process1.74E-02
161GO:0006783: heme biosynthetic process1.74E-02
162GO:0000373: Group II intron splicing1.74E-02
163GO:0006189: 'de novo' IMP biosynthetic process1.74E-02
164GO:0071577: zinc II ion transmembrane transport1.96E-02
165GO:0010267: production of ta-siRNAs involved in RNA interference1.96E-02
166GO:0043067: regulation of programmed cell death1.96E-02
167GO:0006779: porphyrin-containing compound biosynthetic process1.96E-02
168GO:0010018: far-red light signaling pathway1.96E-02
169GO:0006949: syncytium formation2.19E-02
170GO:0010629: negative regulation of gene expression2.19E-02
171GO:0006896: Golgi to vacuole transport2.19E-02
172GO:0045036: protein targeting to chloroplast2.19E-02
173GO:0016311: dephosphorylation2.32E-02
174GO:0019684: photosynthesis, light reaction2.42E-02
175GO:0009089: lysine biosynthetic process via diaminopimelate2.42E-02
176GO:1903507: negative regulation of nucleic acid-templated transcription2.42E-02
177GO:0006879: cellular iron ion homeostasis2.42E-02
178GO:0009832: plant-type cell wall biogenesis2.56E-02
179GO:0006790: sulfur compound metabolic process2.67E-02
180GO:0016024: CDP-diacylglycerol biosynthetic process2.67E-02
181GO:0005975: carbohydrate metabolic process2.79E-02
182GO:0048527: lateral root development2.82E-02
183GO:0010588: cotyledon vascular tissue pattern formation2.93E-02
184GO:0010628: positive regulation of gene expression2.93E-02
185GO:0009266: response to temperature stimulus3.19E-02
186GO:0006302: double-strand break repair3.19E-02
187GO:0048467: gynoecium development3.19E-02
188GO:0010143: cutin biosynthetic process3.19E-02
189GO:0006541: glutamine metabolic process3.19E-02
190GO:0019853: L-ascorbic acid biosynthetic process3.46E-02
191GO:0071732: cellular response to nitric oxide3.46E-02
192GO:0006631: fatty acid metabolic process3.67E-02
193GO:0006071: glycerol metabolic process3.74E-02
194GO:0006833: water transport3.74E-02
195GO:0042753: positive regulation of circadian rhythm3.74E-02
196GO:0009833: plant-type primary cell wall biogenesis3.74E-02
197GO:0045490: pectin catabolic process3.85E-02
198GO:0009944: polarity specification of adaxial/abaxial axis4.02E-02
199GO:0030150: protein import into mitochondrial matrix4.02E-02
200GO:0006289: nucleotide-excision repair4.02E-02
201GO:0051302: regulation of cell division4.32E-02
202GO:0043622: cortical microtubule organization4.32E-02
203GO:0009965: leaf morphogenesis4.47E-02
204GO:0007166: cell surface receptor signaling pathway4.54E-02
205GO:0048511: rhythmic process4.61E-02
206GO:0061077: chaperone-mediated protein folding4.61E-02
207GO:0003333: amino acid transmembrane transport4.61E-02
208GO:0009814: defense response, incompatible interaction4.92E-02
209GO:0010017: red or far-red light signaling pathway4.92E-02
210GO:2000022: regulation of jasmonic acid mediated signaling pathway4.92E-02
211GO:0006730: one-carbon metabolic process4.92E-02
212GO:0031348: negative regulation of defense response4.92E-02
213GO:0009664: plant-type cell wall organization4.98E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0043864: indoleacetamide hydrolase activity0.00E+00
10GO:0010349: L-galactose dehydrogenase activity0.00E+00
11GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0050613: delta14-sterol reductase activity0.00E+00
14GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
15GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
16GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
17GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
18GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
19GO:0045435: lycopene epsilon cyclase activity0.00E+00
20GO:0004823: leucine-tRNA ligase activity0.00E+00
21GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
22GO:0004822: isoleucine-tRNA ligase activity0.00E+00
23GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
24GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
25GO:0005528: FK506 binding5.56E-05
26GO:0002161: aminoacyl-tRNA editing activity6.96E-05
27GO:0003747: translation release factor activity1.19E-04
28GO:0016149: translation release factor activity, codon specific1.45E-04
29GO:0004040: amidase activity3.66E-04
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.26E-04
31GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity7.09E-04
32GO:0050139: nicotinate-N-glucosyltransferase activity7.09E-04
33GO:0005227: calcium activated cation channel activity7.09E-04
34GO:0004425: indole-3-glycerol-phosphate synthase activity7.09E-04
35GO:0004733: pyridoxamine-phosphate oxidase activity7.09E-04
36GO:0051777: ent-kaurenoate oxidase activity7.09E-04
37GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity7.09E-04
38GO:0004856: xylulokinase activity7.09E-04
39GO:0004813: alanine-tRNA ligase activity7.09E-04
40GO:0004853: uroporphyrinogen decarboxylase activity7.09E-04
41GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.09E-04
42GO:0052857: NADPHX epimerase activity7.09E-04
43GO:0052856: NADHX epimerase activity7.09E-04
44GO:0008236: serine-type peptidase activity7.36E-04
45GO:0030570: pectate lyase activity1.01E-03
46GO:0004033: aldo-keto reductase (NADP) activity1.07E-03
47GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.53E-03
48GO:0009977: proton motive force dependent protein transmembrane transporter activity1.53E-03
49GO:0004817: cysteine-tRNA ligase activity1.53E-03
50GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.53E-03
51GO:0016630: protochlorophyllide reductase activity1.53E-03
52GO:0004829: threonine-tRNA ligase activity1.53E-03
53GO:0003919: FMN adenylyltransferase activity1.53E-03
54GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.53E-03
55GO:0004512: inositol-3-phosphate synthase activity1.53E-03
56GO:0015172: acidic amino acid transmembrane transporter activity1.53E-03
57GO:0016788: hydrolase activity, acting on ester bonds1.71E-03
58GO:0004049: anthranilate synthase activity2.53E-03
59GO:0052692: raffinose alpha-galactosidase activity2.53E-03
60GO:0080054: low-affinity nitrate transmembrane transporter activity2.53E-03
61GO:0015462: ATPase-coupled protein transmembrane transporter activity2.53E-03
62GO:0005504: fatty acid binding2.53E-03
63GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.53E-03
64GO:0004557: alpha-galactosidase activity2.53E-03
65GO:0070402: NADPH binding2.53E-03
66GO:0016791: phosphatase activity2.54E-03
67GO:0000049: tRNA binding2.88E-03
68GO:0008017: microtubule binding2.98E-03
69GO:0035198: miRNA binding3.68E-03
70GO:0001872: (1->3)-beta-D-glucan binding3.68E-03
71GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity3.68E-03
72GO:0015175: neutral amino acid transmembrane transporter activity3.68E-03
73GO:0003999: adenine phosphoribosyltransferase activity3.68E-03
74GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.68E-03
75GO:0016851: magnesium chelatase activity3.68E-03
76GO:0047627: adenylylsulfatase activity3.68E-03
77GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.70E-03
78GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.97E-03
79GO:0070628: proteasome binding4.97E-03
80GO:0004045: aminoacyl-tRNA hydrolase activity4.97E-03
81GO:0045430: chalcone isomerase activity4.97E-03
82GO:0009044: xylan 1,4-beta-xylosidase activity4.97E-03
83GO:0019199: transmembrane receptor protein kinase activity4.97E-03
84GO:0042277: peptide binding4.97E-03
85GO:0046556: alpha-L-arabinofuranosidase activity4.97E-03
86GO:0004659: prenyltransferase activity4.97E-03
87GO:0016279: protein-lysine N-methyltransferase activity4.97E-03
88GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.42E-03
89GO:0004176: ATP-dependent peptidase activity6.26E-03
90GO:0016846: carbon-sulfur lyase activity6.39E-03
91GO:0016773: phosphotransferase activity, alcohol group as acceptor6.39E-03
92GO:0003993: acid phosphatase activity6.45E-03
93GO:0016829: lyase activity7.31E-03
94GO:0080030: methyl indole-3-acetate esterase activity7.94E-03
95GO:0031593: polyubiquitin binding7.94E-03
96GO:0016208: AMP binding7.94E-03
97GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.94E-03
98GO:0042578: phosphoric ester hydrolase activity7.94E-03
99GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.94E-03
100GO:0004812: aminoacyl-tRNA ligase activity8.86E-03
101GO:0016832: aldehyde-lyase activity9.60E-03
102GO:0003730: mRNA 3'-UTR binding9.60E-03
103GO:0004144: diacylglycerol O-acyltransferase activity9.60E-03
104GO:0005261: cation channel activity9.60E-03
105GO:0004723: calcium-dependent protein serine/threonine phosphatase activity9.60E-03
106GO:0009927: histidine phosphotransfer kinase activity9.60E-03
107GO:0008080: N-acetyltransferase activity1.04E-02
108GO:0005338: nucleotide-sugar transmembrane transporter activity1.14E-02
109GO:0019899: enzyme binding1.14E-02
110GO:0043022: ribosome binding1.33E-02
111GO:0003743: translation initiation factor activity1.34E-02
112GO:0008173: RNA methyltransferase activity1.53E-02
113GO:0008237: metallopeptidase activity1.66E-02
114GO:0016844: strictosidine synthase activity1.96E-02
115GO:0005381: iron ion transmembrane transporter activity1.96E-02
116GO:0004805: trehalose-phosphatase activity2.19E-02
117GO:0102483: scopolin beta-glucosidase activity2.20E-02
118GO:0030247: polysaccharide binding2.20E-02
119GO:0047372: acylglycerol lipase activity2.42E-02
120GO:0008327: methyl-CpG binding2.42E-02
121GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.83E-02
122GO:0004089: carbonate dehydratase activity2.93E-02
123GO:0003725: double-stranded RNA binding2.93E-02
124GO:0004022: alcohol dehydrogenase (NAD) activity2.93E-02
125GO:0015266: protein channel activity2.93E-02
126GO:0004252: serine-type endopeptidase activity2.94E-02
127GO:0008083: growth factor activity3.19E-02
128GO:0008422: beta-glucosidase activity3.38E-02
129GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.53E-02
130GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.74E-02
131GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.74E-02
132GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.74E-02
133GO:0051536: iron-sulfur cluster binding4.02E-02
134GO:0005385: zinc ion transmembrane transporter activity4.02E-02
135GO:0043130: ubiquitin binding4.02E-02
136GO:0003714: transcription corepressor activity4.02E-02
137GO:0051537: 2 iron, 2 sulfur cluster binding4.30E-02
138GO:0035091: phosphatidylinositol binding4.30E-02
139GO:0051087: chaperone binding4.32E-02
140GO:0008324: cation transmembrane transporter activity4.32E-02
141GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.92E-02
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Gene type



Gene DE type