Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G13170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009606: tropism0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:1903224: regulation of endodermal cell differentiation0.00E+00
4GO:0097164: ammonium ion metabolic process0.00E+00
5GO:0045184: establishment of protein localization0.00E+00
6GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
7GO:0015843: methylammonium transport0.00E+00
8GO:0031222: arabinan catabolic process0.00E+00
9GO:0070979: protein K11-linked ubiquitination0.00E+00
10GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
11GO:0090071: negative regulation of ribosome biogenesis0.00E+00
12GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
13GO:0046620: regulation of organ growth4.14E-09
14GO:0009926: auxin polar transport5.56E-07
15GO:0009734: auxin-activated signaling pathway1.47E-06
16GO:0042793: transcription from plastid promoter6.57E-06
17GO:0009658: chloroplast organization1.54E-05
18GO:0009451: RNA modification3.25E-05
19GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.56E-05
20GO:0009657: plastid organization3.69E-05
21GO:0007389: pattern specification process3.69E-05
22GO:0032502: developmental process1.22E-04
23GO:0009733: response to auxin1.32E-04
24GO:2000038: regulation of stomatal complex development1.32E-04
25GO:0010252: auxin homeostasis1.53E-04
26GO:0032876: negative regulation of DNA endoreduplication2.04E-04
27GO:0070509: calcium ion import4.87E-04
28GO:0090558: plant epidermis development4.87E-04
29GO:0010063: positive regulation of trichoblast fate specification4.87E-04
30GO:0010480: microsporocyte differentiation4.87E-04
31GO:0035987: endodermal cell differentiation4.87E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation4.87E-04
33GO:0000066: mitochondrial ornithine transport4.87E-04
34GO:0034757: negative regulation of iron ion transport4.87E-04
35GO:0042659: regulation of cell fate specification4.87E-04
36GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.87E-04
37GO:0048437: floral organ development4.95E-04
38GO:0042255: ribosome assembly6.17E-04
39GO:0000373: Group II intron splicing8.99E-04
40GO:0000902: cell morphogenesis8.99E-04
41GO:0040008: regulation of growth9.17E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process1.05E-03
43GO:0070981: L-asparagine biosynthetic process1.05E-03
44GO:0010271: regulation of chlorophyll catabolic process1.05E-03
45GO:0018026: peptidyl-lysine monomethylation1.05E-03
46GO:0071497: cellular response to freezing1.05E-03
47GO:0009662: etioplast organization1.05E-03
48GO:1904143: positive regulation of carotenoid biosynthetic process1.05E-03
49GO:0006529: asparagine biosynthetic process1.05E-03
50GO:2000123: positive regulation of stomatal complex development1.05E-03
51GO:0080117: secondary growth1.71E-03
52GO:0031145: anaphase-promoting complex-dependent catabolic process1.71E-03
53GO:0042780: tRNA 3'-end processing1.71E-03
54GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.71E-03
55GO:0045910: negative regulation of DNA recombination1.71E-03
56GO:0090708: specification of plant organ axis polarity1.71E-03
57GO:0010411: xyloglucan metabolic process1.89E-03
58GO:0000160: phosphorelay signal transduction system2.30E-03
59GO:0070588: calcium ion transmembrane transport2.34E-03
60GO:0015696: ammonium transport2.48E-03
61GO:0046739: transport of virus in multicellular host2.48E-03
62GO:0032981: mitochondrial respiratory chain complex I assembly2.48E-03
63GO:0031048: chromatin silencing by small RNA2.48E-03
64GO:2000904: regulation of starch metabolic process2.48E-03
65GO:0043572: plastid fission2.48E-03
66GO:1902476: chloride transmembrane transport2.48E-03
67GO:0010071: root meristem specification2.48E-03
68GO:0051513: regulation of monopolar cell growth2.48E-03
69GO:0007231: osmosensory signaling pathway2.48E-03
70GO:0030071: regulation of mitotic metaphase/anaphase transition2.48E-03
71GO:0051639: actin filament network formation2.48E-03
72GO:0010239: chloroplast mRNA processing2.48E-03
73GO:0044211: CTP salvage2.48E-03
74GO:0019048: modulation by virus of host morphology or physiology2.48E-03
75GO:0030104: water homeostasis3.34E-03
76GO:0033500: carbohydrate homeostasis3.34E-03
77GO:0006021: inositol biosynthetic process3.34E-03
78GO:0051567: histone H3-K9 methylation3.34E-03
79GO:0044206: UMP salvage3.34E-03
80GO:1901141: regulation of lignin biosynthetic process3.34E-03
81GO:0006479: protein methylation3.34E-03
82GO:0051764: actin crosslink formation3.34E-03
83GO:0072488: ammonium transmembrane transport3.34E-03
84GO:0016998: cell wall macromolecule catabolic process3.52E-03
85GO:0010082: regulation of root meristem growth4.21E-03
86GO:0042546: cell wall biogenesis4.26E-03
87GO:1902183: regulation of shoot apical meristem development4.28E-03
88GO:0016123: xanthophyll biosynthetic process4.28E-03
89GO:0010158: abaxial cell fate specification4.28E-03
90GO:0030308: negative regulation of cell growth4.28E-03
91GO:0010375: stomatal complex patterning4.28E-03
92GO:0048831: regulation of shoot system development5.30E-03
93GO:0010315: auxin efflux5.30E-03
94GO:0006206: pyrimidine nucleobase metabolic process5.30E-03
95GO:0018258: protein O-linked glycosylation via hydroxyproline5.30E-03
96GO:0009228: thiamine biosynthetic process5.30E-03
97GO:0016458: gene silencing5.30E-03
98GO:0010405: arabinogalactan protein metabolic process5.30E-03
99GO:0006655: phosphatidylglycerol biosynthetic process5.30E-03
100GO:0010087: phloem or xylem histogenesis5.37E-03
101GO:0009416: response to light stimulus5.44E-03
102GO:0008380: RNA splicing5.76E-03
103GO:0009741: response to brassinosteroid5.79E-03
104GO:0009736: cytokinin-activated signaling pathway5.92E-03
105GO:0009646: response to absence of light6.23E-03
106GO:0017148: negative regulation of translation6.40E-03
107GO:0009942: longitudinal axis specification6.40E-03
108GO:0048509: regulation of meristem development6.40E-03
109GO:1901259: chloroplast rRNA processing6.40E-03
110GO:0030488: tRNA methylation6.40E-03
111GO:2000037: regulation of stomatal complex patterning6.40E-03
112GO:2000067: regulation of root morphogenesis6.40E-03
113GO:0009955: adaxial/abaxial pattern specification6.40E-03
114GO:0006821: chloride transport7.57E-03
115GO:0006955: immune response7.57E-03
116GO:0048528: post-embryonic root development7.57E-03
117GO:0010050: vegetative phase change7.57E-03
118GO:0010583: response to cyclopentenone7.65E-03
119GO:0001522: pseudouridine synthesis8.81E-03
120GO:0009787: regulation of abscisic acid-activated signaling pathway8.81E-03
121GO:0009850: auxin metabolic process8.81E-03
122GO:0006353: DNA-templated transcription, termination8.81E-03
123GO:0048766: root hair initiation8.81E-03
124GO:0032875: regulation of DNA endoreduplication8.81E-03
125GO:0055075: potassium ion homeostasis8.81E-03
126GO:0000105: histidine biosynthetic process8.81E-03
127GO:0051607: defense response to virus9.81E-03
128GO:0009742: brassinosteroid mediated signaling pathway1.00E-02
129GO:0010497: plasmodesmata-mediated intercellular transport1.01E-02
130GO:0009827: plant-type cell wall modification1.01E-02
131GO:2000024: regulation of leaf development1.15E-02
132GO:0009051: pentose-phosphate shunt, oxidative branch1.15E-02
133GO:0080167: response to karrikin1.19E-02
134GO:0031425: chloroplast RNA processing1.29E-02
135GO:0009638: phototropism1.29E-02
136GO:0042761: very long-chain fatty acid biosynthetic process1.29E-02
137GO:2000280: regulation of root development1.29E-02
138GO:0048481: plant ovule development1.36E-02
139GO:0030422: production of siRNA involved in RNA interference1.45E-02
140GO:0009641: shade avoidance1.45E-02
141GO:0006298: mismatch repair1.45E-02
142GO:0006949: syncytium formation1.45E-02
143GO:0006259: DNA metabolic process1.45E-02
144GO:0009790: embryo development1.51E-02
145GO:0006265: DNA topological change1.60E-02
146GO:0048229: gametophyte development1.60E-02
147GO:0010015: root morphogenesis1.60E-02
148GO:0006816: calcium ion transport1.60E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.76E-02
150GO:0045037: protein import into chloroplast stroma1.76E-02
151GO:0010582: floral meristem determinacy1.76E-02
152GO:0008361: regulation of cell size1.76E-02
153GO:0006790: sulfur compound metabolic process1.76E-02
154GO:0009785: blue light signaling pathway1.93E-02
155GO:0006006: glucose metabolic process1.93E-02
156GO:0010075: regulation of meristem growth1.93E-02
157GO:0009767: photosynthetic electron transport chain1.93E-02
158GO:0006839: mitochondrial transport1.97E-02
159GO:0006468: protein phosphorylation1.99E-02
160GO:0006541: glutamine metabolic process2.11E-02
161GO:0010207: photosystem II assembly2.11E-02
162GO:0010020: chloroplast fission2.11E-02
163GO:0009934: regulation of meristem structural organization2.11E-02
164GO:0071555: cell wall organization2.13E-02
165GO:0009739: response to gibberellin2.15E-02
166GO:0008283: cell proliferation2.23E-02
167GO:0048364: root development2.27E-02
168GO:0046854: phosphatidylinositol phosphorylation2.28E-02
169GO:0006071: glycerol metabolic process2.47E-02
170GO:0006833: water transport2.47E-02
171GO:0000027: ribosomal large subunit assembly2.66E-02
172GO:0030150: protein import into mitochondrial matrix2.66E-02
173GO:0051017: actin filament bundle assembly2.66E-02
174GO:0009944: polarity specification of adaxial/abaxial axis2.66E-02
175GO:0051302: regulation of cell division2.85E-02
176GO:0006418: tRNA aminoacylation for protein translation2.85E-02
177GO:0006306: DNA methylation3.05E-02
178GO:0006730: one-carbon metabolic process3.25E-02
179GO:0031348: negative regulation of defense response3.25E-02
180GO:0042254: ribosome biogenesis3.31E-02
181GO:0071215: cellular response to abscisic acid stimulus3.46E-02
182GO:0006284: base-excision repair3.67E-02
183GO:0042127: regulation of cell proliferation3.67E-02
184GO:0048316: seed development3.67E-02
185GO:0048367: shoot system development3.67E-02
186GO:0070417: cellular response to cold3.89E-02
187GO:0008033: tRNA processing4.11E-02
188GO:0048653: anther development4.11E-02
189GO:0042631: cellular response to water deprivation4.11E-02
190GO:0009624: response to nematode4.28E-02
191GO:0006662: glycerol ether metabolic process4.33E-02
192GO:0010305: leaf vascular tissue pattern formation4.33E-02
193GO:0048868: pollen tube development4.33E-02
194GO:0006342: chromatin silencing4.33E-02
195GO:0009958: positive gravitropism4.33E-02
196GO:0048544: recognition of pollen4.56E-02
197GO:0007059: chromosome segregation4.56E-02
198GO:0008654: phospholipid biosynthetic process4.80E-02
199GO:0016310: phosphorylation4.98E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0009672: auxin:proton symporter activity6.61E-05
5GO:0004519: endonuclease activity1.37E-04
6GO:0010329: auxin efflux transmembrane transporter activity1.59E-04
7GO:0005290: L-histidine transmembrane transporter activity4.87E-04
8GO:0016274: protein-arginine N-methyltransferase activity4.87E-04
9GO:0004071: aspartate-ammonia ligase activity4.87E-04
10GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.87E-04
11GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.87E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.87E-04
13GO:0004830: tryptophan-tRNA ligase activity4.87E-04
14GO:0010347: L-galactose-1-phosphate phosphatase activity4.87E-04
15GO:0042834: peptidoglycan binding4.87E-04
16GO:0019843: rRNA binding5.63E-04
17GO:0016762: xyloglucan:xyloglucosyl transferase activity9.65E-04
18GO:0008934: inositol monophosphate 1-phosphatase activity1.05E-03
19GO:0052833: inositol monophosphate 4-phosphatase activity1.05E-03
20GO:0000064: L-ornithine transmembrane transporter activity1.05E-03
21GO:0009884: cytokinin receptor activity1.05E-03
22GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.05E-03
23GO:0052832: inositol monophosphate 3-phosphatase activity1.05E-03
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.05E-03
25GO:0042781: 3'-tRNA processing endoribonuclease activity1.71E-03
26GO:0005034: osmosensor activity1.71E-03
27GO:0070180: large ribosomal subunit rRNA binding1.71E-03
28GO:0070330: aromatase activity1.71E-03
29GO:0017150: tRNA dihydrouridine synthase activity1.71E-03
30GO:0005262: calcium channel activity1.85E-03
31GO:0016798: hydrolase activity, acting on glycosyl bonds1.89E-03
32GO:0003735: structural constituent of ribosome2.19E-03
33GO:0015181: arginine transmembrane transporter activity2.48E-03
34GO:0035197: siRNA binding2.48E-03
35GO:0043023: ribosomal large subunit binding2.48E-03
36GO:0001872: (1->3)-beta-D-glucan binding2.48E-03
37GO:0015189: L-lysine transmembrane transporter activity2.48E-03
38GO:0005253: anion channel activity3.34E-03
39GO:0046556: alpha-L-arabinofuranosidase activity3.34E-03
40GO:0016279: protein-lysine N-methyltransferase activity3.34E-03
41GO:0004845: uracil phosphoribosyltransferase activity3.34E-03
42GO:0004345: glucose-6-phosphate dehydrogenase activity3.34E-03
43GO:0016773: phosphotransferase activity, alcohol group as acceptor4.28E-03
44GO:0018685: alkane 1-monooxygenase activity4.28E-03
45GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.28E-03
46GO:0008725: DNA-3-methyladenine glycosylase activity4.28E-03
47GO:0003727: single-stranded RNA binding4.58E-03
48GO:0003723: RNA binding4.86E-03
49GO:0008519: ammonium transmembrane transporter activity5.30E-03
50GO:0005247: voltage-gated chloride channel activity5.30E-03
51GO:0030983: mismatched DNA binding5.30E-03
52GO:0004605: phosphatidate cytidylyltransferase activity5.30E-03
53GO:1990714: hydroxyproline O-galactosyltransferase activity5.30E-03
54GO:0004849: uridine kinase activity6.40E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity6.40E-03
56GO:0019900: kinase binding6.40E-03
57GO:0008195: phosphatidate phosphatase activity6.40E-03
58GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.40E-03
59GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.40E-03
60GO:0008168: methyltransferase activity8.08E-03
61GO:0000156: phosphorelay response regulator activity8.17E-03
62GO:0004650: polygalacturonase activity8.28E-03
63GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.36E-03
64GO:0008173: RNA methyltransferase activity1.01E-02
65GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.01E-02
66GO:0008889: glycerophosphodiester phosphodiesterase activity1.15E-02
67GO:0004674: protein serine/threonine kinase activity1.15E-02
68GO:0016829: lyase activity1.37E-02
69GO:0004673: protein histidine kinase activity1.45E-02
70GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.58E-02
71GO:0005089: Rho guanyl-nucleotide exchange factor activity1.60E-02
72GO:0004521: endoribonuclease activity1.76E-02
73GO:0004022: alcohol dehydrogenase (NAD) activity1.93E-02
74GO:0015266: protein channel activity1.93E-02
75GO:0004089: carbonate dehydratase activity1.93E-02
76GO:0031072: heat shock protein binding1.93E-02
77GO:0000155: phosphorelay sensor kinase activity1.93E-02
78GO:0009982: pseudouridine synthase activity1.93E-02
79GO:0005215: transporter activity2.57E-02
80GO:0031418: L-ascorbic acid binding2.66E-02
81GO:0043424: protein histidine kinase binding2.85E-02
82GO:0005345: purine nucleobase transmembrane transporter activity2.85E-02
83GO:0004176: ATP-dependent peptidase activity3.05E-02
84GO:0033612: receptor serine/threonine kinase binding3.05E-02
85GO:0008408: 3'-5' exonuclease activity3.05E-02
86GO:0016301: kinase activity3.05E-02
87GO:0003690: double-stranded DNA binding3.12E-02
88GO:0030570: pectate lyase activity3.46E-02
89GO:0022891: substrate-specific transmembrane transporter activity3.46E-02
90GO:0050660: flavin adenine dinucleotide binding3.87E-02
91GO:0047134: protein-disulfide reductase activity3.89E-02
92GO:0004812: aminoacyl-tRNA ligase activity3.89E-02
93GO:0004527: exonuclease activity4.33E-02
94GO:0003713: transcription coactivator activity4.33E-02
95GO:0008536: Ran GTPase binding4.33E-02
96GO:0004791: thioredoxin-disulfide reductase activity4.56E-02
97GO:0019901: protein kinase binding4.80E-02
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Gene type



Gene DE type