co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0006223: uracil salvage	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0071474: cellular hyperosmotic response	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0015979: photosynthesis	2.42E-09
8	GO:0015995: chlorophyll biosynthetic process	5.92E-09
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.66E-07
10	GO:0048564: photosystem I assembly	8.86E-06
11	GO:0032544: plastid translation	1.28E-05
12	GO:0071482: cellular response to light stimulus	1.28E-05
13	GO:0009658: chloroplast organization	1.57E-05
14	GO:0009773: photosynthetic electron transport in photosystem I	3.94E-05
15	GO:0010021: amylopectin biosynthetic process	6.35E-05
16	GO:0009735: response to cytokinin	6.37E-05
17	GO:0055114: oxidation-reduction process	7.84E-05
18	GO:0043953: protein transport by the Tat complex	3.14E-04
19	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.14E-04
20	GO:0015671: oxygen transport	3.14E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	3.14E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	3.14E-04
23	GO:0065002: intracellular protein transmembrane transport	3.14E-04
24	GO:0034337: RNA folding	3.14E-04
25	GO:0048363: mucilage pectin metabolic process	3.14E-04
26	GO:0019252: starch biosynthetic process	3.89E-04
27	GO:0006783: heme biosynthetic process	4.78E-04
28	GO:0005982: starch metabolic process	5.66E-04
29	GO:0010027: thylakoid membrane organization	6.81E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.87E-04
31	GO:0006435: threonyl-tRNA aminoacylation	6.87E-04
32	GO:0000256: allantoin catabolic process	6.87E-04
33	GO:0071668: plant-type cell wall assembly	6.87E-04
34	GO:0080183: response to photooxidative stress	6.87E-04
35	GO:0006729: tetrahydrobiopterin biosynthetic process	6.87E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.87E-04
37	GO:0051262: protein tetramerization	6.87E-04
38	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.87E-04
39	GO:0042254: ribosome biogenesis	7.02E-04
40	GO:0006094: gluconeogenesis	9.84E-04
41	GO:0006000: fructose metabolic process	1.11E-03
42	GO:0010207: photosystem II assembly	1.11E-03
43	GO:0006518: peptide metabolic process	1.11E-03
44	GO:0010136: ureide catabolic process	1.11E-03
45	GO:0034051: negative regulation of plant-type hypersensitive response	1.11E-03
46	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.11E-03
47	GO:0044375: regulation of peroxisome size	1.11E-03
48	GO:0005977: glycogen metabolic process	1.11E-03
49	GO:0006810: transport	1.42E-03
50	GO:0006241: CTP biosynthetic process	1.60E-03
51	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.60E-03
52	GO:0033014: tetrapyrrole biosynthetic process	1.60E-03
53	GO:0006145: purine nucleobase catabolic process	1.60E-03
54	GO:0006165: nucleoside diphosphate phosphorylation	1.60E-03
55	GO:0006228: UTP biosynthetic process	1.60E-03
56	GO:1901332: negative regulation of lateral root development	1.60E-03
57	GO:0006986: response to unfolded protein	1.60E-03
58	GO:2001141: regulation of RNA biosynthetic process	1.60E-03
59	GO:0010371: regulation of gibberellin biosynthetic process	1.60E-03
60	GO:0051085: chaperone mediated protein folding requiring cofactor	1.60E-03
61	GO:0009152: purine ribonucleotide biosynthetic process	1.60E-03
62	GO:0046653: tetrahydrofolate metabolic process	1.60E-03
63	GO:0006412: translation	2.00E-03
64	GO:0019748: secondary metabolic process	2.02E-03
65	GO:0006109: regulation of carbohydrate metabolic process	2.14E-03
66	GO:0006183: GTP biosynthetic process	2.14E-03
67	GO:0045727: positive regulation of translation	2.14E-03
68	GO:0006536: glutamate metabolic process	2.14E-03
69	GO:0044206: UMP salvage	2.14E-03
70	GO:0000304: response to singlet oxygen	2.74E-03
71	GO:0080110: sporopollenin biosynthetic process	2.74E-03
72	GO:0016120: carotene biosynthetic process	2.74E-03
73	GO:0043097: pyrimidine nucleoside salvage	2.74E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	2.74E-03
75	GO:0006655: phosphatidylglycerol biosynthetic process	3.38E-03
76	GO:0006206: pyrimidine nucleobase metabolic process	3.38E-03
77	GO:1901259: chloroplast rRNA processing	4.06E-03
78	GO:0009854: oxidative photosynthetic carbon pathway	4.06E-03
79	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.80E-03
80	GO:0009645: response to low light intensity stimulus	4.80E-03
81	GO:0005978: glycogen biosynthetic process	5.57E-03
82	GO:0016559: peroxisome fission	5.57E-03
83	GO:0006526: arginine biosynthetic process	6.39E-03
84	GO:0017004: cytochrome complex assembly	6.39E-03
85	GO:0006002: fructose 6-phosphate metabolic process	6.39E-03
86	GO:0009817: defense response to fungus, incompatible interaction	7.02E-03
87	GO:0018298: protein-chromophore linkage	7.02E-03
88	GO:0019432: triglyceride biosynthetic process	7.24E-03
89	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.14E-03
90	GO:0006779: porphyrin-containing compound biosynthetic process	8.14E-03
91	GO:0009853: photorespiration	8.90E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	9.07E-03
93	GO:0034599: cellular response to oxidative stress	9.31E-03
94	GO:0009089: lysine biosynthetic process via diaminopimelate	1.00E-02
95	GO:0008285: negative regulation of cell proliferation	1.00E-02
96	GO:0043085: positive regulation of catalytic activity	1.00E-02
97	GO:0006352: DNA-templated transcription, initiation	1.00E-02
98	GO:0009750: response to fructose	1.00E-02
99	GO:0018119: peptidyl-cysteine S-nitrosylation	1.00E-02
100	GO:0005983: starch catabolic process	1.11E-02
101	GO:0016024: CDP-diacylglycerol biosynthetic process	1.11E-02
102	GO:0006807: nitrogen compound metabolic process	1.21E-02
103	GO:0009767: photosynthetic electron transport chain	1.21E-02
104	GO:0005986: sucrose biosynthetic process	1.21E-02
105	GO:0009266: response to temperature stimulus	1.32E-02
106	GO:0005975: carbohydrate metabolic process	1.34E-02
107	GO:0007031: peroxisome organization	1.43E-02
108	GO:0006636: unsaturated fatty acid biosynthetic process	1.54E-02
109	GO:0019762: glucosinolate catabolic process	1.54E-02
110	GO:0006364: rRNA processing	1.55E-02
111	GO:0009116: nucleoside metabolic process	1.66E-02
112	GO:0007017: microtubule-based process	1.78E-02
113	GO:0009768: photosynthesis, light harvesting in photosystem I	1.78E-02
114	GO:0010073: meristem maintenance	1.78E-02
115	GO:0061077: chaperone-mediated protein folding	1.91E-02
116	GO:0031408: oxylipin biosynthetic process	1.91E-02
117	GO:0048511: rhythmic process	1.91E-02
118	GO:0016226: iron-sulfur cluster assembly	2.03E-02
119	GO:0035428: hexose transmembrane transport	2.03E-02
120	GO:0080092: regulation of pollen tube growth	2.03E-02
121	GO:0009411: response to UV	2.16E-02
122	GO:0009625: response to insect	2.16E-02
123	GO:0010227: floral organ abscission	2.16E-02
124	GO:0010584: pollen exine formation	2.29E-02
125	GO:0016117: carotenoid biosynthetic process	2.43E-02
126	GO:0042631: cellular response to water deprivation	2.57E-02
127	GO:0042335: cuticle development	2.57E-02
128	GO:0000271: polysaccharide biosynthetic process	2.57E-02
129	GO:0045489: pectin biosynthetic process	2.71E-02
130	GO:0006520: cellular amino acid metabolic process	2.71E-02
131	GO:0006662: glycerol ether metabolic process	2.71E-02
132	GO:0046323: glucose import	2.71E-02
133	GO:0009791: post-embryonic development	3.00E-02
134	GO:0000302: response to reactive oxygen species	3.15E-02
135	GO:0042744: hydrogen peroxide catabolic process	3.16E-02
136	GO:0032502: developmental process	3.30E-02
137	GO:1901657: glycosyl compound metabolic process	3.45E-02
138	GO:0006633: fatty acid biosynthetic process	3.49E-02
139	GO:0009567: double fertilization forming a zygote and endosperm	3.61E-02
140	GO:0010286: heat acclimation	3.77E-02
141	GO:0010228: vegetative to reproductive phase transition of meristem	4.00E-02
142	GO:0016126: sterol biosynthetic process	4.09E-02
143	GO:0006950: response to stress	4.59E-02
144	GO:0016311: dephosphorylation	4.76E-02
145	GO:0006508: proteolysis	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0090711: FMN hydrolase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0050613: delta14-sterol reductase activity	0.00E+00
7	GO:0004567: beta-mannosidase activity	0.00E+00
8	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
9	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
10	GO:0008465: glycerate dehydrogenase activity	0.00E+00
11	GO:0046408: chlorophyll synthetase activity	0.00E+00
12	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
13	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
14	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
15	GO:0005048: signal sequence binding	0.00E+00
16	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
17	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
18	GO:0019843: rRNA binding	7.23E-08
19	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.81E-07
20	GO:0008266: poly(U) RNA binding	2.15E-06
21	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.48E-06
22	GO:0048038: quinone binding	3.18E-05
23	GO:0016851: magnesium chelatase activity	3.55E-05
24	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.14E-04
25	GO:0004856: xylulokinase activity	3.14E-04
26	GO:0004325: ferrochelatase activity	3.14E-04
27	GO:0004853: uroporphyrinogen decarboxylase activity	3.14E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.14E-04
29	GO:0005080: protein kinase C binding	3.14E-04
30	GO:0005344: oxygen transporter activity	3.14E-04
31	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.14E-04
32	GO:0005227: calcium activated cation channel activity	3.14E-04
33	GO:0080079: cellobiose glucosidase activity	3.14E-04
34	GO:0016776: phosphotransferase activity, phosphate group as acceptor	3.14E-04
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-04
36	GO:0003735: structural constituent of ribosome	3.36E-04
37	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.87E-04
38	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.87E-04
39	GO:0016630: protochlorophyllide reductase activity	6.87E-04
40	GO:0004829: threonine-tRNA ligase activity	6.87E-04
41	GO:0019172: glyoxalase III activity	6.87E-04
42	GO:0019156: isoamylase activity	6.87E-04
43	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.87E-04
44	GO:0042389: omega-3 fatty acid desaturase activity	6.87E-04
45	GO:0080041: ADP-ribose pyrophosphohydrolase activity	6.87E-04
46	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.87E-04
47	GO:0033201: alpha-1,4-glucan synthase activity	6.87E-04
48	GO:0031072: heat shock protein binding	9.84E-04
49	GO:0016491: oxidoreductase activity	1.10E-03
50	GO:0043169: cation binding	1.11E-03
51	GO:0004373: glycogen (starch) synthase activity	1.11E-03
52	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.11E-03
53	GO:0004751: ribose-5-phosphate isomerase activity	1.11E-03
54	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.11E-03
55	GO:0070402: NADPH binding	1.11E-03
56	GO:0008864: formyltetrahydrofolate deformylase activity	1.11E-03
57	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.11E-03
58	GO:0003746: translation elongation factor activity	1.28E-03
59	GO:0005528: FK506 binding	1.52E-03
60	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.60E-03
61	GO:0004550: nucleoside diphosphate kinase activity	1.60E-03
62	GO:0043023: ribosomal large subunit binding	1.60E-03
63	GO:0008097: 5S rRNA binding	1.60E-03
64	GO:0004351: glutamate decarboxylase activity	1.60E-03
65	GO:0016987: sigma factor activity	2.14E-03
66	GO:0009011: starch synthase activity	2.14E-03
67	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.14E-03
68	GO:0043495: protein anchor	2.14E-03
69	GO:0001053: plastid sigma factor activity	2.14E-03
70	GO:0005319: lipid transporter activity	2.14E-03
71	GO:0004845: uracil phosphoribosyltransferase activity	2.14E-03
72	GO:0003959: NADPH dehydrogenase activity	2.74E-03
73	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.74E-03
74	GO:0008374: O-acyltransferase activity	2.74E-03
75	GO:0004601: peroxidase activity	3.14E-03
76	GO:0050662: coenzyme binding	3.24E-03
77	GO:0004130: cytochrome-c peroxidase activity	3.38E-03
78	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.38E-03
79	GO:0004556: alpha-amylase activity	3.38E-03
80	GO:0004462: lactoylglutathione lyase activity	3.38E-03
81	GO:0004332: fructose-bisphosphate aldolase activity	3.38E-03
82	GO:0016787: hydrolase activity	3.51E-03
83	GO:0005525: GTP binding	3.95E-03
84	GO:0051082: unfolded protein binding	4.03E-03
85	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.06E-03
86	GO:0004849: uridine kinase activity	4.06E-03
87	GO:0005261: cation channel activity	4.06E-03
88	GO:0051920: peroxiredoxin activity	4.06E-03
89	GO:0019899: enzyme binding	4.80E-03
90	GO:0008312: 7S RNA binding	5.57E-03
91	GO:0004033: aldo-keto reductase (NADP) activity	5.57E-03
92	GO:0016209: antioxidant activity	5.57E-03
93	GO:0016168: chlorophyll binding	5.68E-03
94	GO:0004721: phosphoprotein phosphatase activity	6.33E-03
95	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.39E-03
96	GO:0008135: translation factor activity, RNA binding	6.39E-03
97	GO:0071949: FAD binding	7.24E-03
98	GO:0004222: metalloendopeptidase activity	7.74E-03
99	GO:0008047: enzyme activator activity	9.07E-03
100	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.00E-02
101	GO:0004185: serine-type carboxypeptidase activity	1.15E-02
102	GO:0004565: beta-galactosidase activity	1.21E-02
103	GO:0003729: mRNA binding	1.29E-02
104	GO:0051287: NAD binding	1.40E-02
105	GO:0031409: pigment binding	1.54E-02
106	GO:0005509: calcium ion binding	1.59E-02
107	GO:0051536: iron-sulfur cluster binding	1.66E-02
108	GO:0004857: enzyme inhibitor activity	1.66E-02
109	GO:0051087: chaperone binding	1.78E-02
110	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.90E-02
111	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.03E-02
112	GO:0022891: substrate-specific transmembrane transporter activity	2.16E-02
113	GO:0003756: protein disulfide isomerase activity	2.29E-02
114	GO:0046872: metal ion binding	2.38E-02
115	GO:0047134: protein-disulfide reductase activity	2.43E-02
116	GO:0008080: N-acetyltransferase activity	2.71E-02
117	GO:0005355: glucose transmembrane transporter activity	2.85E-02
118	GO:0004791: thioredoxin-disulfide reductase activity	2.85E-02
119	GO:0003924: GTPase activity	3.02E-02
120	GO:0004252: serine-type endopeptidase activity	3.08E-02
121	GO:0009055: electron carrier activity	3.30E-02
122	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-02
123	GO:0005200: structural constituent of cytoskeleton	3.77E-02
124	GO:0102483: scopolin beta-glucosidase activity	4.59E-02
125	GO:0042802: identical protein binding	4.84E-02