Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:0071474: cellular hyperosmotic response0.00E+00
4GO:0006573: valine metabolic process0.00E+00
5GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0034337: RNA folding0.00E+00
8GO:0006982: response to lipid hydroperoxide0.00E+00
9GO:0010335: response to non-ionic osmotic stress0.00E+00
10GO:1901918: negative regulation of exoribonuclease activity0.00E+00
11GO:0090279: regulation of calcium ion import0.00E+00
12GO:0033494: ferulate metabolic process0.00E+00
13GO:0055114: oxidation-reduction process6.56E-07
14GO:0015995: chlorophyll biosynthetic process9.20E-06
15GO:0006021: inositol biosynthetic process8.19E-05
16GO:0010027: thylakoid membrane organization9.87E-05
17GO:0010207: photosystem II assembly1.02E-04
18GO:0010143: cutin biosynthetic process1.02E-04
19GO:0006636: unsaturated fatty acid biosynthetic process1.43E-04
20GO:0046855: inositol phosphate dephosphorylation1.84E-04
21GO:0009658: chloroplast organization2.08E-04
22GO:0000481: maturation of 5S rRNA3.65E-04
23GO:1904964: positive regulation of phytol biosynthetic process3.65E-04
24GO:0043953: protein transport by the Tat complex3.65E-04
25GO:0006551: leucine metabolic process3.65E-04
26GO:0065002: intracellular protein transmembrane transport3.65E-04
27GO:0043686: co-translational protein modification3.65E-04
28GO:0010426: DNA methylation on cytosine within a CHH sequence3.65E-04
29GO:0043087: regulation of GTPase activity3.65E-04
30GO:0071461: cellular response to redox state3.65E-04
31GO:0051775: response to redox state3.65E-04
32GO:0046167: glycerol-3-phosphate biosynthetic process3.65E-04
33GO:0071277: cellular response to calcium ion3.65E-04
34GO:0043007: maintenance of rDNA3.65E-04
35GO:1902458: positive regulation of stomatal opening3.65E-04
36GO:0009090: homoserine biosynthetic process3.65E-04
37GO:0010362: negative regulation of anion channel activity by blue light3.65E-04
38GO:0046467: membrane lipid biosynthetic process3.65E-04
39GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.65E-04
40GO:0031426: polycistronic mRNA processing3.65E-04
41GO:0015969: guanosine tetraphosphate metabolic process3.65E-04
42GO:1904966: positive regulation of vitamin E biosynthetic process3.65E-04
43GO:0016559: peroxisome fission4.05E-04
44GO:0009704: de-etiolation4.05E-04
45GO:0015979: photosynthesis4.40E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process7.94E-04
47GO:0006650: glycerophospholipid metabolic process7.94E-04
48GO:0010155: regulation of proton transport7.94E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process7.94E-04
50GO:0015790: UDP-xylose transport7.94E-04
51GO:0030388: fructose 1,6-bisphosphate metabolic process7.94E-04
52GO:0051262: protein tetramerization7.94E-04
53GO:0080005: photosystem stoichiometry adjustment7.94E-04
54GO:0042819: vitamin B6 biosynthetic process7.94E-04
55GO:0010541: acropetal auxin transport7.94E-04
56GO:0016024: CDP-diacylglycerol biosynthetic process1.07E-03
57GO:0006790: sulfur compound metabolic process1.07E-03
58GO:0006094: gluconeogenesis1.22E-03
59GO:0044375: regulation of peroxisome size1.29E-03
60GO:0010160: formation of animal organ boundary1.29E-03
61GO:0034051: negative regulation of plant-type hypersensitive response1.29E-03
62GO:0006000: fructose metabolic process1.29E-03
63GO:0046168: glycerol-3-phosphate catabolic process1.29E-03
64GO:0019253: reductive pentose-phosphate cycle1.37E-03
65GO:0046854: phosphatidylinositol phosphorylation1.53E-03
66GO:0009637: response to blue light1.69E-03
67GO:2001141: regulation of RNA biosynthetic process1.85E-03
68GO:0042823: pyridoxal phosphate biosynthetic process1.85E-03
69GO:0009067: aspartate family amino acid biosynthetic process1.85E-03
70GO:0006020: inositol metabolic process1.85E-03
71GO:0009152: purine ribonucleotide biosynthetic process1.85E-03
72GO:0046653: tetrahydrofolate metabolic process1.85E-03
73GO:0006107: oxaloacetate metabolic process1.85E-03
74GO:0010239: chloroplast mRNA processing1.85E-03
75GO:0033014: tetrapyrrole biosynthetic process1.85E-03
76GO:0008615: pyridoxine biosynthetic process1.85E-03
77GO:0043481: anthocyanin accumulation in tissues in response to UV light1.85E-03
78GO:0006072: glycerol-3-phosphate metabolic process1.85E-03
79GO:0006633: fatty acid biosynthetic process1.97E-03
80GO:0006631: fatty acid metabolic process2.11E-03
81GO:0010021: amylopectin biosynthetic process2.49E-03
82GO:0008295: spermidine biosynthetic process2.49E-03
83GO:0019464: glycine decarboxylation via glycine cleavage system2.49E-03
84GO:2000306: positive regulation of photomorphogenesis2.49E-03
85GO:0006546: glycine catabolic process2.49E-03
86GO:0015994: chlorophyll metabolic process2.49E-03
87GO:0006734: NADH metabolic process2.49E-03
88GO:0010600: regulation of auxin biosynthetic process2.49E-03
89GO:0005975: carbohydrate metabolic process2.65E-03
90GO:0032259: methylation2.70E-03
91GO:0010236: plastoquinone biosynthetic process3.18E-03
92GO:0045038: protein import into chloroplast thylakoid membrane3.18E-03
93GO:0031365: N-terminal protein amino acid modification3.18E-03
94GO:0006465: signal peptide processing3.18E-03
95GO:0006564: L-serine biosynthetic process3.18E-03
96GO:0009904: chloroplast accumulation movement3.18E-03
97GO:0006520: cellular amino acid metabolic process3.76E-03
98GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.93E-03
99GO:0010304: PSII associated light-harvesting complex II catabolic process3.93E-03
100GO:0042549: photosystem II stabilization3.93E-03
101GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.93E-03
102GO:0006655: phosphatidylglycerol biosynthetic process3.93E-03
103GO:0060918: auxin transport3.93E-03
104GO:0045962: positive regulation of development, heterochronic3.93E-03
105GO:0019252: starch biosynthetic process4.34E-03
106GO:0009791: post-embryonic development4.34E-03
107GO:0009099: valine biosynthetic process4.74E-03
108GO:0009903: chloroplast avoidance movement4.74E-03
109GO:0009088: threonine biosynthetic process4.74E-03
110GO:1901259: chloroplast rRNA processing4.74E-03
111GO:0009082: branched-chain amino acid biosynthetic process4.74E-03
112GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.74E-03
113GO:0010161: red light signaling pathway5.60E-03
114GO:1900056: negative regulation of leaf senescence5.60E-03
115GO:0006400: tRNA modification5.60E-03
116GO:2000070: regulation of response to water deprivation6.51E-03
117GO:0042255: ribosome assembly6.51E-03
118GO:0006353: DNA-templated transcription, termination6.51E-03
119GO:0007155: cell adhesion6.51E-03
120GO:0048564: photosystem I assembly6.51E-03
121GO:0010928: regulation of auxin mediated signaling pathway6.51E-03
122GO:0008610: lipid biosynthetic process6.51E-03
123GO:0032508: DNA duplex unwinding6.51E-03
124GO:0044550: secondary metabolite biosynthetic process6.98E-03
125GO:0007186: G-protein coupled receptor signaling pathway7.47E-03
126GO:0009657: plastid organization7.47E-03
127GO:2000031: regulation of salicylic acid mediated signaling pathway7.47E-03
128GO:0009932: cell tip growth7.47E-03
129GO:0006002: fructose 6-phosphate metabolic process7.47E-03
130GO:0071482: cellular response to light stimulus7.47E-03
131GO:0015996: chlorophyll catabolic process7.47E-03
132GO:0009097: isoleucine biosynthetic process7.47E-03
133GO:0048507: meristem development8.47E-03
134GO:0009821: alkaloid biosynthetic process8.47E-03
135GO:0010206: photosystem II repair8.47E-03
136GO:0090333: regulation of stomatal closure8.47E-03
137GO:0006098: pentose-phosphate shunt8.47E-03
138GO:0006783: heme biosynthetic process8.47E-03
139GO:0018298: protein-chromophore linkage8.79E-03
140GO:0010380: regulation of chlorophyll biosynthetic process9.53E-03
141GO:0010267: production of ta-siRNAs involved in RNA interference9.53E-03
142GO:0010205: photoinhibition9.53E-03
143GO:0009638: phototropism9.53E-03
144GO:0006779: porphyrin-containing compound biosynthetic process9.53E-03
145GO:0009086: methionine biosynthetic process9.53E-03
146GO:0006811: ion transport9.70E-03
147GO:0007568: aging1.02E-02
148GO:0043069: negative regulation of programmed cell death1.06E-02
149GO:0009641: shade avoidance1.06E-02
150GO:0010215: cellulose microfibril organization1.06E-02
151GO:0006535: cysteine biosynthetic process from serine1.06E-02
152GO:0007623: circadian rhythm1.08E-02
153GO:0009408: response to heat1.11E-02
154GO:0018119: peptidyl-cysteine S-nitrosylation1.18E-02
155GO:0016485: protein processing1.18E-02
156GO:0009089: lysine biosynthetic process via diaminopimelate1.18E-02
157GO:0072593: reactive oxygen species metabolic process1.18E-02
158GO:0006352: DNA-templated transcription, initiation1.18E-02
159GO:0009773: photosynthetic electron transport in photosystem I1.18E-02
160GO:0002213: defense response to insect1.30E-02
161GO:0045037: protein import into chloroplast stroma1.30E-02
162GO:0008361: regulation of cell size1.30E-02
163GO:0006006: glucose metabolic process1.42E-02
164GO:0009785: blue light signaling pathway1.42E-02
165GO:0018107: peptidyl-threonine phosphorylation1.42E-02
166GO:0009718: anthocyanin-containing compound biosynthetic process1.42E-02
167GO:0009725: response to hormone1.42E-02
168GO:0009767: photosynthetic electron transport chain1.42E-02
169GO:0005986: sucrose biosynthetic process1.42E-02
170GO:0030048: actin filament-based movement1.42E-02
171GO:0006108: malate metabolic process1.42E-02
172GO:0009744: response to sucrose1.44E-02
173GO:0042546: cell wall biogenesis1.50E-02
174GO:0010020: chloroplast fission1.55E-02
175GO:0010223: secondary shoot formation1.55E-02
176GO:0010540: basipetal auxin transport1.55E-02
177GO:0009266: response to temperature stimulus1.55E-02
178GO:0034605: cellular response to heat1.55E-02
179GO:0007031: peroxisome organization1.68E-02
180GO:0019853: L-ascorbic acid biosynthetic process1.68E-02
181GO:0042343: indole glucosinolate metabolic process1.68E-02
182GO:0009825: multidimensional cell growth1.68E-02
183GO:0006833: water transport1.81E-02
184GO:0019762: glucosinolate catabolic process1.81E-02
185GO:0042538: hyperosmotic salinity response1.81E-02
186GO:0010025: wax biosynthetic process1.81E-02
187GO:0019344: cysteine biosynthetic process1.95E-02
188GO:0006406: mRNA export from nucleus1.95E-02
189GO:0008299: isoprenoid biosynthetic process2.09E-02
190GO:0009695: jasmonic acid biosynthetic process2.09E-02
191GO:0006857: oligopeptide transport2.09E-02
192GO:0009768: photosynthesis, light harvesting in photosystem I2.09E-02
193GO:0098542: defense response to other organism2.24E-02
194GO:0061077: chaperone-mediated protein folding2.24E-02
195GO:0006306: DNA methylation2.24E-02
196GO:0009735: response to cytokinin2.30E-02
197GO:0006096: glycolytic process2.31E-02
198GO:0080092: regulation of pollen tube growth2.38E-02
199GO:0019748: secondary metabolic process2.38E-02
200GO:0010017: red or far-red light signaling pathway2.38E-02
201GO:2000022: regulation of jasmonic acid mediated signaling pathway2.38E-02
202GO:0030433: ubiquitin-dependent ERAD pathway2.38E-02
203GO:0071369: cellular response to ethylene stimulus2.54E-02
204GO:0009294: DNA mediated transformation2.54E-02
205GO:0009416: response to light stimulus2.62E-02
206GO:0071555: cell wall organization2.67E-02
207GO:0009306: protein secretion2.69E-02
208GO:0019722: calcium-mediated signaling2.69E-02
209GO:0006817: phosphate ion transport2.69E-02
210GO:0048443: stamen development2.69E-02
211GO:0034220: ion transmembrane transport3.01E-02
212GO:0010182: sugar mediated signaling pathway3.18E-02
213GO:0009958: positive gravitropism3.18E-02
214GO:0045489: pectin biosynthetic process3.18E-02
215GO:0009646: response to absence of light3.35E-02
216GO:0008654: phospholipid biosynthetic process3.52E-02
217GO:0010183: pollen tube guidance3.52E-02
218GO:0009058: biosynthetic process3.66E-02
219GO:0055085: transmembrane transport3.71E-02
220GO:0032502: developmental process3.87E-02
221GO:0007264: small GTPase mediated signal transduction3.87E-02
222GO:0031047: gene silencing by RNA3.87E-02
223GO:0030163: protein catabolic process4.05E-02
224GO:0009567: double fertilization forming a zygote and endosperm4.23E-02
225GO:0009639: response to red or far red light4.23E-02
226GO:0007267: cell-cell signaling4.42E-02
227GO:0051607: defense response to virus4.61E-02
228GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.99E-02
RankGO TermAdjusted P value
1GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
4GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
5GO:0036033: mediator complex binding0.00E+00
6GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
7GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
11GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0008934: inositol monophosphate 1-phosphatase activity6.00E-06
15GO:0052833: inositol monophosphate 4-phosphatase activity6.00E-06
16GO:0052832: inositol monophosphate 3-phosphatase activity6.00E-06
17GO:0018708: thiol S-methyltransferase activity6.00E-06
18GO:0016491: oxidoreductase activity9.19E-06
19GO:0016851: magnesium chelatase activity4.63E-05
20GO:0000293: ferric-chelate reductase activity1.84E-04
21GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.84E-04
22GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.49E-04
23GO:0008746: NAD(P)+ transhydrogenase activity3.65E-04
24GO:0004325: ferrochelatase activity3.65E-04
25GO:0004328: formamidase activity3.65E-04
26GO:0042586: peptide deformylase activity3.65E-04
27GO:0031957: very long-chain fatty acid-CoA ligase activity3.65E-04
28GO:0010347: L-galactose-1-phosphate phosphatase activity3.65E-04
29GO:0035671: enone reductase activity3.65E-04
30GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.65E-04
31GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.65E-04
32GO:0030794: (S)-coclaurine-N-methyltransferase activity3.65E-04
33GO:0005227: calcium activated cation channel activity3.65E-04
34GO:0003984: acetolactate synthase activity3.65E-04
35GO:0080132: fatty acid alpha-hydroxylase activity3.65E-04
36GO:0005464: UDP-xylose transmembrane transporter activity7.94E-04
37GO:0004412: homoserine dehydrogenase activity7.94E-04
38GO:0050017: L-3-cyanoalanine synthase activity7.94E-04
39GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity7.94E-04
40GO:0080045: quercetin 3'-O-glucosyltransferase activity7.94E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.94E-04
42GO:0048531: beta-1,3-galactosyltransferase activity7.94E-04
43GO:0042389: omega-3 fatty acid desaturase activity7.94E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity7.94E-04
45GO:0004617: phosphoglycerate dehydrogenase activity7.94E-04
46GO:0004766: spermidine synthase activity7.94E-04
47GO:0033201: alpha-1,4-glucan synthase activity7.94E-04
48GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.94E-04
49GO:0008728: GTP diphosphokinase activity7.94E-04
50GO:0016597: amino acid binding8.38E-04
51GO:0004565: beta-galactosidase activity1.22E-03
52GO:0031072: heat shock protein binding1.22E-03
53GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.29E-03
54GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.29E-03
55GO:0070402: NADPH binding1.29E-03
56GO:0008864: formyltetrahydrofolate deformylase activity1.29E-03
57GO:0010277: chlorophyllide a oxygenase [overall] activity1.29E-03
58GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.29E-03
59GO:0004373: glycogen (starch) synthase activity1.29E-03
60GO:0050734: hydroxycinnamoyltransferase activity1.29E-03
61GO:0009882: blue light photoreceptor activity1.85E-03
62GO:0004072: aspartate kinase activity1.85E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity1.85E-03
64GO:0048027: mRNA 5'-UTR binding1.85E-03
65GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.85E-03
66GO:0043495: protein anchor2.49E-03
67GO:0001053: plastid sigma factor activity2.49E-03
68GO:0009011: starch synthase activity2.49E-03
69GO:0016987: sigma factor activity2.49E-03
70GO:0003727: single-stranded RNA binding2.98E-03
71GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.18E-03
72GO:0042802: identical protein binding3.28E-03
73GO:0035673: oligopeptide transmembrane transporter activity3.93E-03
74GO:0016615: malate dehydrogenase activity3.93E-03
75GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.93E-03
76GO:0042578: phosphoric ester hydrolase activity3.93E-03
77GO:0080046: quercetin 4'-O-glucosyltransferase activity3.93E-03
78GO:0004332: fructose-bisphosphate aldolase activity3.93E-03
79GO:0008168: methyltransferase activity4.18E-03
80GO:0102391: decanoate--CoA ligase activity4.74E-03
81GO:0030060: L-malate dehydrogenase activity4.74E-03
82GO:0005261: cation channel activity4.74E-03
83GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.74E-03
84GO:0009927: histidine phosphotransfer kinase activity4.74E-03
85GO:0004124: cysteine synthase activity4.74E-03
86GO:0051753: mannan synthase activity4.74E-03
87GO:0004467: long-chain fatty acid-CoA ligase activity5.60E-03
88GO:0019899: enzyme binding5.60E-03
89GO:0005525: GTP binding6.15E-03
90GO:0016887: ATPase activity6.28E-03
91GO:0016168: chlorophyll binding7.11E-03
92GO:0003729: mRNA binding7.22E-03
93GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.47E-03
94GO:0008135: translation factor activity, RNA binding7.47E-03
95GO:0071949: FAD binding8.47E-03
96GO:0016844: strictosidine synthase activity9.53E-03
97GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.53E-03
98GO:0004222: metalloendopeptidase activity9.70E-03
99GO:0003746: translation elongation factor activity1.12E-02
100GO:0005089: Rho guanyl-nucleotide exchange factor activity1.18E-02
101GO:0015198: oligopeptide transporter activity1.30E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.42E-02
103GO:0010329: auxin efflux transmembrane transporter activity1.42E-02
104GO:0000155: phosphorelay sensor kinase activity1.42E-02
105GO:0008081: phosphoric diester hydrolase activity1.42E-02
106GO:0003774: motor activity1.55E-02
107GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.55E-02
108GO:0035091: phosphatidylinositol binding1.56E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding1.56E-02
110GO:0008146: sulfotransferase activity1.68E-02
111GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.69E-02
112GO:0051287: NAD binding1.75E-02
113GO:0031409: pigment binding1.81E-02
114GO:0005528: FK506 binding1.95E-02
115GO:0003690: double-stranded DNA binding2.02E-02
116GO:0004176: ATP-dependent peptidase activity2.24E-02
117GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.38E-02
118GO:0022891: substrate-specific transmembrane transporter activity2.54E-02
119GO:0005506: iron ion binding2.60E-02
120GO:0051082: unfolded protein binding2.78E-02
121GO:0052689: carboxylic ester hydrolase activity2.79E-02
122GO:0042803: protein homodimerization activity3.26E-02
123GO:0010181: FMN binding3.35E-02
124GO:0016853: isomerase activity3.35E-02
125GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.39E-02
126GO:0019843: rRNA binding3.48E-02
127GO:0016740: transferase activity3.51E-02
128GO:0004872: receptor activity3.52E-02
129GO:0016762: xyloglucan:xyloglucosyl transferase activity3.69E-02
130GO:0048038: quinone binding3.69E-02
131GO:0003924: GTPase activity3.99E-02
132GO:0016791: phosphatase activity4.23E-02
133GO:0008237: metallopeptidase activity4.42E-02
134GO:0016722: oxidoreductase activity, oxidizing metal ions4.42E-02
135GO:0015250: water channel activity4.80E-02
136GO:0008017: microtubule binding4.99E-02
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Gene type



Gene DE type