Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0006114: glycerol biosynthetic process0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0071474: cellular hyperosmotic response0.00E+00
8GO:0019685: photosynthesis, dark reaction0.00E+00
9GO:0015995: chlorophyll biosynthetic process1.68E-06
10GO:0071482: cellular response to light stimulus6.03E-06
11GO:2001141: regulation of RNA biosynthetic process2.08E-05
12GO:0010207: photosystem II assembly3.72E-05
13GO:0048564: photosystem I assembly2.06E-04
14GO:0015671: oxygen transport2.32E-04
15GO:0000481: maturation of 5S rRNA2.32E-04
16GO:0015801: aromatic amino acid transport2.32E-04
17GO:1902458: positive regulation of stomatal opening2.32E-04
18GO:0034337: RNA folding2.32E-04
19GO:0006783: heme biosynthetic process3.09E-04
20GO:0006352: DNA-templated transcription, initiation4.97E-04
21GO:0009735: response to cytokinin5.09E-04
22GO:0006435: threonyl-tRNA aminoacylation5.15E-04
23GO:0035304: regulation of protein dephosphorylation5.15E-04
24GO:0010115: regulation of abscisic acid biosynthetic process5.15E-04
25GO:0006432: phenylalanyl-tRNA aminoacylation5.15E-04
26GO:0000256: allantoin catabolic process5.15E-04
27GO:1903426: regulation of reactive oxygen species biosynthetic process5.15E-04
28GO:0051262: protein tetramerization5.15E-04
29GO:0010275: NAD(P)H dehydrogenase complex assembly5.15E-04
30GO:0010136: ureide catabolic process8.37E-04
31GO:0015940: pantothenate biosynthetic process8.37E-04
32GO:0006631: fatty acid metabolic process9.15E-04
33GO:0006145: purine nucleobase catabolic process1.19E-03
34GO:0033014: tetrapyrrole biosynthetic process1.19E-03
35GO:0006424: glutamyl-tRNA aminoacylation1.19E-03
36GO:1901332: negative regulation of lateral root development1.19E-03
37GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.19E-03
38GO:0010371: regulation of gibberellin biosynthetic process1.19E-03
39GO:0009765: photosynthesis, light harvesting1.59E-03
40GO:0010021: amylopectin biosynthetic process1.59E-03
41GO:0016120: carotene biosynthetic process2.03E-03
42GO:0000304: response to singlet oxygen2.03E-03
43GO:0080110: sporopollenin biosynthetic process2.03E-03
44GO:0032543: mitochondrial translation2.03E-03
45GO:0045038: protein import into chloroplast thylakoid membrane2.03E-03
46GO:0031365: N-terminal protein amino acid modification2.03E-03
47GO:0016123: xanthophyll biosynthetic process2.03E-03
48GO:0006655: phosphatidylglycerol biosynthetic process2.50E-03
49GO:0042549: photosystem II stabilization2.50E-03
50GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.50E-03
51GO:1901259: chloroplast rRNA processing3.00E-03
52GO:0009955: adaxial/abaxial pattern specification3.00E-03
53GO:0010027: thylakoid membrane organization3.46E-03
54GO:0006400: tRNA modification3.54E-03
55GO:0009395: phospholipid catabolic process3.54E-03
56GO:0005978: glycogen biosynthetic process4.10E-03
57GO:0032508: DNA duplex unwinding4.10E-03
58GO:2000070: regulation of response to water deprivation4.10E-03
59GO:0016311: dephosphorylation4.28E-03
60GO:0009817: defense response to fungus, incompatible interaction4.50E-03
61GO:0007186: G-protein coupled receptor signaling pathway4.70E-03
62GO:0032544: plastid translation4.70E-03
63GO:0017004: cytochrome complex assembly4.70E-03
64GO:0015996: chlorophyll catabolic process4.70E-03
65GO:0009813: flavonoid biosynthetic process4.73E-03
66GO:0006098: pentose-phosphate shunt5.32E-03
67GO:0019432: triglyceride biosynthetic process5.32E-03
68GO:0009821: alkaloid biosynthetic process5.32E-03
69GO:0010206: photosystem II repair5.32E-03
70GO:0006779: porphyrin-containing compound biosynthetic process5.97E-03
71GO:0005982: starch metabolic process5.97E-03
72GO:0010205: photoinhibition5.97E-03
73GO:0006782: protoporphyrinogen IX biosynthetic process6.65E-03
74GO:0008285: negative regulation of cell proliferation7.35E-03
75GO:0019684: photosynthesis, light reaction7.35E-03
76GO:0016024: CDP-diacylglycerol biosynthetic process8.08E-03
77GO:0045037: protein import into chloroplast stroma8.08E-03
78GO:0009725: response to hormone8.84E-03
79GO:0006094: gluconeogenesis8.84E-03
80GO:0009767: photosynthetic electron transport chain8.84E-03
81GO:0010143: cutin biosynthetic process9.62E-03
82GO:0055114: oxidation-reduction process1.06E-02
83GO:0019762: glucosinolate catabolic process1.13E-02
84GO:0006096: glycolytic process1.18E-02
85GO:0015979: photosynthesis1.25E-02
86GO:0006418: tRNA aminoacylation for protein translation1.30E-02
87GO:0007017: microtubule-based process1.30E-02
88GO:0010073: meristem maintenance1.30E-02
89GO:0061077: chaperone-mediated protein folding1.39E-02
90GO:0031408: oxylipin biosynthetic process1.39E-02
91GO:0003333: amino acid transmembrane transport1.39E-02
92GO:0048511: rhythmic process1.39E-02
93GO:0010431: seed maturation1.39E-02
94GO:0016226: iron-sulfur cluster assembly1.48E-02
95GO:0080092: regulation of pollen tube growth1.48E-02
96GO:0009625: response to insect1.57E-02
97GO:0010227: floral organ abscission1.57E-02
98GO:0032259: methylation1.64E-02
99GO:0010584: pollen exine formation1.67E-02
100GO:0016117: carotenoid biosynthetic process1.77E-02
101GO:0042335: cuticle development1.87E-02
102GO:0010182: sugar mediated signaling pathway1.97E-02
103GO:0019252: starch biosynthetic process2.18E-02
104GO:0006412: translation2.43E-02
105GO:0009451: RNA modification2.51E-02
106GO:0016126: sterol biosynthetic process2.98E-02
107GO:0048481: plant ovule development3.59E-02
108GO:0010311: lateral root formation3.72E-02
109GO:0042254: ribosome biogenesis3.86E-02
110GO:0015031: protein transport3.90E-02
111GO:0007568: aging3.98E-02
112GO:0006970: response to osmotic stress4.08E-02
113GO:0006865: amino acid transport4.12E-02
114GO:0045087: innate immune response4.25E-02
115GO:0006810: transport4.80E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
3GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
10GO:0043136: glycerol-3-phosphatase activity0.00E+00
11GO:0000121: glycerol-1-phosphatase activity0.00E+00
12GO:0005504: fatty acid binding9.11E-06
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.17E-05
14GO:0016851: magnesium chelatase activity2.08E-05
15GO:0008266: poly(U) RNA binding3.72E-05
16GO:0016987: sigma factor activity3.78E-05
17GO:0045430: chalcone isomerase activity3.78E-05
18GO:0001053: plastid sigma factor activity3.78E-05
19GO:0005528: FK506 binding6.28E-05
20GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.32E-04
21GO:0010242: oxygen evolving activity2.32E-04
22GO:0004325: ferrochelatase activity2.32E-04
23GO:0004853: uroporphyrinogen decarboxylase activity2.32E-04
24GO:0004856: xylulokinase activity2.32E-04
25GO:0005344: oxygen transporter activity2.32E-04
26GO:0005227: calcium activated cation channel activity2.32E-04
27GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.32E-04
28GO:0019843: rRNA binding5.07E-04
29GO:0004826: phenylalanine-tRNA ligase activity5.15E-04
30GO:0003844: 1,4-alpha-glucan branching enzyme activity5.15E-04
31GO:0004829: threonine-tRNA ligase activity5.15E-04
32GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.15E-04
33GO:0015173: aromatic amino acid transmembrane transporter activity5.15E-04
34GO:0000049: tRNA binding5.68E-04
35GO:0043169: cation binding8.37E-04
36GO:0002161: aminoacyl-tRNA editing activity8.37E-04
37GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.37E-04
38GO:0030267: glyoxylate reductase (NADP) activity8.37E-04
39GO:0004180: carboxypeptidase activity8.37E-04
40GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.19E-03
41GO:0016491: oxidoreductase activity1.27E-03
42GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.59E-03
43GO:0016773: phosphotransferase activity, alcohol group as acceptor2.03E-03
44GO:0005275: amine transmembrane transporter activity2.03E-03
45GO:0048038: quinone binding2.40E-03
46GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.50E-03
47GO:0004332: fructose-bisphosphate aldolase activity2.50E-03
48GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.00E-03
49GO:0005261: cation channel activity3.00E-03
50GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.00E-03
51GO:0003735: structural constituent of ribosome3.14E-03
52GO:0008235: metalloexopeptidase activity3.54E-03
53GO:0008236: serine-type peptidase activity4.28E-03
54GO:0003746: translation elongation factor activity5.71E-03
55GO:0030955: potassium ion binding5.97E-03
56GO:0016844: strictosidine synthase activity5.97E-03
57GO:0003993: acid phosphatase activity5.97E-03
58GO:0004743: pyruvate kinase activity5.97E-03
59GO:0005089: Rho guanyl-nucleotide exchange factor activity7.35E-03
60GO:0004177: aminopeptidase activity7.35E-03
61GO:0047372: acylglycerol lipase activity7.35E-03
62GO:0016788: hydrolase activity, acting on ester bonds8.20E-03
63GO:0004565: beta-galactosidase activity8.84E-03
64GO:0031072: heat shock protein binding8.84E-03
65GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.93E-03
66GO:0016787: hydrolase activity1.09E-02
67GO:0051536: iron-sulfur cluster binding1.21E-02
68GO:0004857: enzyme inhibitor activity1.21E-02
69GO:0030570: pectate lyase activity1.57E-02
70GO:0003756: protein disulfide isomerase activity1.67E-02
71GO:0004812: aminoacyl-tRNA ligase activity1.77E-02
72GO:0008080: N-acetyltransferase activity1.97E-02
73GO:0050662: coenzyme binding2.07E-02
74GO:0016853: isomerase activity2.07E-02
75GO:0004872: receptor activity2.18E-02
76GO:0005509: calcium ion binding2.44E-02
77GO:0003723: RNA binding2.45E-02
78GO:0005200: structural constituent of cytoskeleton2.74E-02
79GO:0016887: ATPase activity2.99E-02
80GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.12E-02
81GO:0004721: phosphoprotein phosphatase activity3.34E-02
82GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.47E-02
83GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.47E-02
84GO:0008168: methyltransferase activity3.65E-02
85GO:0004601: peroxidase activity3.79E-02
86GO:0004222: metalloendopeptidase activity3.85E-02
87GO:0000987: core promoter proximal region sequence-specific DNA binding4.39E-02
88GO:0003729: mRNA binding4.89E-02
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Gene type



Gene DE type