Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902009: positive regulation of toxin transport0.00E+00
2GO:0010324: membrane invagination0.00E+00
3GO:0071327: cellular response to trehalose stimulus0.00E+00
4GO:0010647: positive regulation of cell communication0.00E+00
5GO:1902001: fatty acid transmembrane transport0.00E+00
6GO:1902289: negative regulation of defense response to oomycetes0.00E+00
7GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
8GO:0010273: detoxification of copper ion0.00E+00
9GO:1900367: positive regulation of defense response to insect0.00E+00
10GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
11GO:0002764: immune response-regulating signaling pathway0.00E+00
12GO:0006983: ER overload response0.00E+00
13GO:0009617: response to bacterium7.52E-07
14GO:0010200: response to chitin6.12E-06
15GO:0031348: negative regulation of defense response3.74E-05
16GO:0015696: ammonium transport8.23E-05
17GO:0060548: negative regulation of cell death1.43E-04
18GO:0072488: ammonium transmembrane transport1.43E-04
19GO:0009816: defense response to bacterium, incompatible interaction2.57E-04
20GO:0006886: intracellular protein transport3.67E-04
21GO:0010045: response to nickel cation5.09E-04
22GO:0048508: embryonic meristem development5.09E-04
23GO:0042350: GDP-L-fucose biosynthetic process5.09E-04
24GO:0019567: arabinose biosynthetic process5.09E-04
25GO:0015969: guanosine tetraphosphate metabolic process5.09E-04
26GO:0099132: ATP hydrolysis coupled cation transmembrane transport5.09E-04
27GO:0009609: response to symbiotic bacterium5.09E-04
28GO:0033306: phytol metabolic process5.09E-04
29GO:1901430: positive regulation of syringal lignin biosynthetic process5.09E-04
30GO:1901183: positive regulation of camalexin biosynthetic process5.09E-04
31GO:0006643: membrane lipid metabolic process5.09E-04
32GO:1900150: regulation of defense response to fungus6.59E-04
33GO:0010112: regulation of systemic acquired resistance9.59E-04
34GO:0051258: protein polymerization1.10E-03
35GO:0060919: auxin influx1.10E-03
36GO:0015012: heparan sulfate proteoglycan biosynthetic process1.10E-03
37GO:0071668: plant-type cell wall assembly1.10E-03
38GO:0015914: phospholipid transport1.10E-03
39GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.10E-03
40GO:0009838: abscission1.10E-03
41GO:0080185: effector dependent induction by symbiont of host immune response1.10E-03
42GO:0010618: aerenchyma formation1.10E-03
43GO:0080181: lateral root branching1.10E-03
44GO:0006024: glycosaminoglycan biosynthetic process1.10E-03
45GO:0055088: lipid homeostasis1.10E-03
46GO:0019374: galactolipid metabolic process1.10E-03
47GO:0000719: photoreactive repair1.10E-03
48GO:0043066: negative regulation of apoptotic process1.10E-03
49GO:0015908: fatty acid transport1.10E-03
50GO:0010042: response to manganese ion1.10E-03
51GO:0044419: interspecies interaction between organisms1.10E-03
52GO:0009945: radial axis specification1.10E-03
53GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.10E-03
54GO:0019725: cellular homeostasis1.10E-03
55GO:0010150: leaf senescence1.12E-03
56GO:1900426: positive regulation of defense response to bacterium1.13E-03
57GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.13E-03
58GO:0006979: response to oxidative stress1.16E-03
59GO:0006032: chitin catabolic process1.32E-03
60GO:0006468: protein phosphorylation1.33E-03
61GO:0007166: cell surface receptor signaling pathway1.42E-03
62GO:0001666: response to hypoxia1.67E-03
63GO:0009626: plant-type hypersensitive response1.75E-03
64GO:0080163: regulation of protein serine/threonine phosphatase activity1.79E-03
65GO:0044375: regulation of peroxisome size1.79E-03
66GO:0015695: organic cation transport1.79E-03
67GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.79E-03
68GO:0016045: detection of bacterium1.79E-03
69GO:1900140: regulation of seedling development1.79E-03
70GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.79E-03
71GO:0010359: regulation of anion channel activity1.79E-03
72GO:0002230: positive regulation of defense response to virus by host1.79E-03
73GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.79E-03
74GO:0009751: response to salicylic acid1.94E-03
75GO:0007034: vacuolar transport2.24E-03
76GO:0046688: response to copper ion2.51E-03
77GO:1902290: positive regulation of defense response to oomycetes2.60E-03
78GO:0043207: response to external biotic stimulus2.60E-03
79GO:0072334: UDP-galactose transmembrane transport2.60E-03
80GO:0015749: monosaccharide transport2.60E-03
81GO:0030100: regulation of endocytosis2.60E-03
82GO:0009226: nucleotide-sugar biosynthetic process2.60E-03
83GO:0072583: clathrin-dependent endocytosis2.60E-03
84GO:0009407: toxin catabolic process2.67E-03
85GO:0007568: aging2.84E-03
86GO:0042742: defense response to bacterium3.27E-03
87GO:0006825: copper ion transport3.43E-03
88GO:0010188: response to microbial phytotoxin3.50E-03
89GO:0080142: regulation of salicylic acid biosynthetic process3.50E-03
90GO:0045227: capsule polysaccharide biosynthetic process3.50E-03
91GO:0033358: UDP-L-arabinose biosynthetic process3.50E-03
92GO:0016998: cell wall macromolecule catabolic process3.77E-03
93GO:0016192: vesicle-mediated transport3.88E-03
94GO:0006897: endocytosis3.98E-03
95GO:0071456: cellular response to hypoxia4.13E-03
96GO:2000022: regulation of jasmonic acid mediated signaling pathway4.13E-03
97GO:0051707: response to other organism4.41E-03
98GO:0097428: protein maturation by iron-sulfur cluster transfer4.49E-03
99GO:0009229: thiamine diphosphate biosynthetic process4.49E-03
100GO:0010225: response to UV-C4.49E-03
101GO:0034052: positive regulation of plant-type hypersensitive response4.49E-03
102GO:0006012: galactose metabolic process4.51E-03
103GO:0009306: protein secretion4.90E-03
104GO:0009636: response to toxic substance5.12E-03
105GO:0009228: thiamine biosynthetic process5.56E-03
106GO:0006014: D-ribose metabolic process5.56E-03
107GO:0009759: indole glucosinolate biosynthetic process5.56E-03
108GO:0010942: positive regulation of cell death5.56E-03
109GO:0010315: auxin efflux5.56E-03
110GO:1900425: negative regulation of defense response to bacterium5.56E-03
111GO:0006574: valine catabolic process5.56E-03
112GO:0015031: protein transport5.77E-03
113GO:0006470: protein dephosphorylation5.99E-03
114GO:0006662: glycerol ether metabolic process6.20E-03
115GO:0009809: lignin biosynthetic process6.46E-03
116GO:0031930: mitochondria-nucleus signaling pathway6.71E-03
117GO:0010555: response to mannitol6.71E-03
118GO:0010310: regulation of hydrogen peroxide metabolic process6.71E-03
119GO:2000067: regulation of root morphogenesis6.71E-03
120GO:0045926: negative regulation of growth6.71E-03
121GO:0009942: longitudinal axis specification6.71E-03
122GO:0048509: regulation of meristem development6.71E-03
123GO:0009749: response to glucose7.16E-03
124GO:0010038: response to metal ion7.95E-03
125GO:0010044: response to aluminum ion7.95E-03
126GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.95E-03
127GO:0009610: response to symbiotic fungus7.95E-03
128GO:0046470: phosphatidylcholine metabolic process7.95E-03
129GO:0043090: amino acid import7.95E-03
130GO:1900056: negative regulation of leaf senescence7.95E-03
131GO:1900057: positive regulation of leaf senescence7.95E-03
132GO:0050829: defense response to Gram-negative bacterium7.95E-03
133GO:0009620: response to fungus9.04E-03
134GO:0016559: peroxisome fission9.25E-03
135GO:0006644: phospholipid metabolic process9.25E-03
136GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline9.25E-03
137GO:0009819: drought recovery9.25E-03
138GO:0030162: regulation of proteolysis9.25E-03
139GO:0006605: protein targeting9.25E-03
140GO:0006904: vesicle docking involved in exocytosis9.91E-03
141GO:0010204: defense response signaling pathway, resistance gene-independent1.06E-02
142GO:2000031: regulation of salicylic acid mediated signaling pathway1.06E-02
143GO:0010208: pollen wall assembly1.06E-02
144GO:0007186: G-protein coupled receptor signaling pathway1.06E-02
145GO:0010120: camalexin biosynthetic process1.06E-02
146GO:0010497: plasmodesmata-mediated intercellular transport1.06E-02
147GO:0006098: pentose-phosphate shunt1.21E-02
148GO:0009821: alkaloid biosynthetic process1.21E-02
149GO:0080144: amino acid homeostasis1.21E-02
150GO:0019432: triglyceride biosynthetic process1.21E-02
151GO:0009627: systemic acquired resistance1.25E-02
152GO:0030042: actin filament depolymerization1.36E-02
153GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.39E-02
154GO:0016049: cell growth1.39E-02
155GO:0008219: cell death1.46E-02
156GO:0043069: negative regulation of programmed cell death1.52E-02
157GO:0010215: cellulose microfibril organization1.52E-02
158GO:0009750: response to fructose1.68E-02
159GO:0030148: sphingolipid biosynthetic process1.68E-02
160GO:0000038: very long-chain fatty acid metabolic process1.68E-02
161GO:0019684: photosynthesis, light reaction1.68E-02
162GO:0043085: positive regulation of catalytic activity1.68E-02
163GO:0050832: defense response to fungus1.80E-02
164GO:0002213: defense response to insect1.85E-02
165GO:0010105: negative regulation of ethylene-activated signaling pathway1.85E-02
166GO:0045037: protein import into chloroplast stroma1.85E-02
167GO:0006952: defense response1.94E-02
168GO:0034599: cellular response to oxidative stress1.94E-02
169GO:0006006: glucose metabolic process2.03E-02
170GO:0055046: microgametogenesis2.03E-02
171GO:2000012: regulation of auxin polar transport2.03E-02
172GO:0035556: intracellular signal transduction2.08E-02
173GO:0010540: basipetal auxin transport2.21E-02
174GO:0009266: response to temperature stimulus2.21E-02
175GO:0034605: cellular response to heat2.21E-02
176GO:0002237: response to molecule of bacterial origin2.21E-02
177GO:0016042: lipid catabolic process2.26E-02
178GO:0070588: calcium ion transmembrane transport2.40E-02
179GO:0010053: root epidermal cell differentiation2.40E-02
180GO:0009225: nucleotide-sugar metabolic process2.40E-02
181GO:0007031: peroxisome organization2.40E-02
182GO:0007030: Golgi organization2.40E-02
183GO:0010167: response to nitrate2.40E-02
184GO:2000377: regulation of reactive oxygen species metabolic process2.79E-02
185GO:0080147: root hair cell development2.79E-02
186GO:0009863: salicylic acid mediated signaling pathway2.79E-02
187GO:0030150: protein import into mitochondrial matrix2.79E-02
188GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.90E-02
189GO:0051302: regulation of cell division2.99E-02
190GO:0048278: vesicle docking3.20E-02
191GO:0030245: cellulose catabolic process3.42E-02
192GO:0009411: response to UV3.64E-02
193GO:0009625: response to insect3.64E-02
194GO:0010089: xylem development3.86E-02
195GO:0010584: pollen exine formation3.86E-02
196GO:0006284: base-excision repair3.86E-02
197GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.08E-02
198GO:0070417: cellular response to cold4.08E-02
199GO:0080022: primary root development4.32E-02
200GO:0000413: protein peptidyl-prolyl isomerization4.32E-02
201GO:0009737: response to abscisic acid4.33E-02
202GO:0046323: glucose import4.55E-02
203GO:0071472: cellular response to salt stress4.55E-02
204GO:0018105: peptidyl-serine phosphorylation4.71E-02
205GO:0061025: membrane fusion4.79E-02
206GO:0009742: brassinosteroid mediated signaling pathway4.84E-02
207GO:0046777: protein autophosphorylation4.97E-02
RankGO TermAdjusted P value
1GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
2GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
3GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
4GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
5GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
6GO:0050334: thiaminase activity0.00E+00
7GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
8GO:0008320: protein transmembrane transporter activity2.81E-07
9GO:0004714: transmembrane receptor protein tyrosine kinase activity2.92E-05
10GO:0004672: protein kinase activity1.30E-04
11GO:0008519: ammonium transmembrane transporter activity3.08E-04
12GO:0003978: UDP-glucose 4-epimerase activity4.12E-04
13GO:0033612: receptor serine/threonine kinase binding4.25E-04
14GO:2001147: camalexin binding5.09E-04
15GO:0015245: fatty acid transporter activity5.09E-04
16GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity5.09E-04
17GO:0050577: GDP-L-fucose synthase activity5.09E-04
18GO:0009679: hexose:proton symporter activity5.09E-04
19GO:0032050: clathrin heavy chain binding5.09E-04
20GO:2001227: quercitrin binding5.09E-04
21GO:1901149: salicylic acid binding5.09E-04
22GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity5.09E-04
23GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity5.09E-04
24GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.92E-04
25GO:0008728: GTP diphosphokinase activity1.10E-03
26GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.10E-03
27GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.10E-03
28GO:0045140: inositol phosphoceramide synthase activity1.10E-03
29GO:0015036: disulfide oxidoreductase activity1.10E-03
30GO:0004568: chitinase activity1.32E-03
31GO:0004713: protein tyrosine kinase activity1.32E-03
32GO:0004871: signal transducer activity1.44E-03
33GO:0001664: G-protein coupled receptor binding1.79E-03
34GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.79E-03
35GO:0016531: copper chaperone activity1.79E-03
36GO:0031683: G-protein beta/gamma-subunit complex binding1.79E-03
37GO:0008375: acetylglucosaminyltransferase activity1.93E-03
38GO:0005388: calcium-transporting ATPase activity1.98E-03
39GO:0004806: triglyceride lipase activity2.06E-03
40GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.60E-03
41GO:0050373: UDP-arabinose 4-epimerase activity3.50E-03
42GO:0010328: auxin influx transmembrane transporter activity3.50E-03
43GO:0019199: transmembrane receptor protein kinase activity3.50E-03
44GO:0004364: glutathione transferase activity4.19E-03
45GO:0005496: steroid binding4.49E-03
46GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.49E-03
47GO:0008725: DNA-3-methyladenine glycosylase activity4.49E-03
48GO:0005459: UDP-galactose transmembrane transporter activity4.49E-03
49GO:0015145: monosaccharide transmembrane transporter activity4.49E-03
50GO:0005546: phosphatidylinositol-4,5-bisphosphate binding4.49E-03
51GO:0047134: protein-disulfide reductase activity5.32E-03
52GO:0016301: kinase activity6.24E-03
53GO:0004791: thioredoxin-disulfide reductase activity6.67E-03
54GO:0050662: coenzyme binding6.67E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity6.71E-03
56GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.71E-03
57GO:0004747: ribokinase activity6.71E-03
58GO:0004144: diacylglycerol O-acyltransferase activity6.71E-03
59GO:0043295: glutathione binding7.95E-03
60GO:0004620: phospholipase activity7.95E-03
61GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.75E-03
62GO:0008865: fructokinase activity9.25E-03
63GO:0015035: protein disulfide oxidoreductase activity1.05E-02
64GO:0016746: transferase activity, transferring acyl groups1.05E-02
65GO:0004630: phospholipase D activity1.06E-02
66GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.06E-02
67GO:0009931: calcium-dependent protein serine/threonine kinase activity1.25E-02
68GO:0004683: calmodulin-dependent protein kinase activity1.31E-02
69GO:0047617: acyl-CoA hydrolase activity1.36E-02
70GO:0016844: strictosidine synthase activity1.36E-02
71GO:0004674: protein serine/threonine kinase activity1.40E-02
72GO:0008171: O-methyltransferase activity1.52E-02
73GO:0008047: enzyme activator activity1.52E-02
74GO:0015020: glucuronosyltransferase activity1.52E-02
75GO:0004864: protein phosphatase inhibitor activity1.52E-02
76GO:0005525: GTP binding1.64E-02
77GO:0008559: xenobiotic-transporting ATPase activity1.68E-02
78GO:0005543: phospholipid binding1.68E-02
79GO:0008794: arsenate reductase (glutaredoxin) activity1.68E-02
80GO:0015198: oligopeptide transporter activity1.85E-02
81GO:0004722: protein serine/threonine phosphatase activity1.98E-02
82GO:0004712: protein serine/threonine/tyrosine kinase activity2.02E-02
83GO:0010329: auxin efflux transmembrane transporter activity2.03E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity2.03E-02
85GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.03E-02
86GO:0005509: calcium ion binding2.08E-02
87GO:0004190: aspartic-type endopeptidase activity2.40E-02
88GO:0005198: structural molecule activity2.69E-02
89GO:0051536: iron-sulfur cluster binding2.79E-02
90GO:0031418: L-ascorbic acid binding2.79E-02
91GO:0003954: NADH dehydrogenase activity2.79E-02
92GO:0003824: catalytic activity2.88E-02
93GO:0051287: NAD binding2.90E-02
94GO:0019706: protein-cysteine S-palmitoyltransferase activity3.20E-02
95GO:0008234: cysteine-type peptidase activity3.57E-02
96GO:0008810: cellulase activity3.64E-02
97GO:0005524: ATP binding4.25E-02
98GO:0016853: isomerase activity4.79E-02
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Gene type



Gene DE type