Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G10120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0015843: methylammonium transport0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:0042817: pyridoxal metabolic process0.00E+00
12GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
15GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
16GO:0009658: chloroplast organization3.46E-12
17GO:0042793: transcription from plastid promoter5.69E-08
18GO:0001578: microtubule bundle formation3.59E-05
19GO:0009657: plastid organization3.74E-05
20GO:0000373: Group II intron splicing5.08E-05
21GO:0045037: protein import into chloroplast stroma1.32E-04
22GO:0051322: anaphase1.34E-04
23GO:0009793: embryo development ending in seed dormancy1.81E-04
24GO:0010020: chloroplast fission1.91E-04
25GO:0009451: RNA modification2.20E-04
26GO:0030488: tRNA methylation3.89E-04
27GO:2000021: regulation of ion homeostasis4.90E-04
28GO:0043609: regulation of carbon utilization4.90E-04
29GO:0006436: tryptophanyl-tRNA aminoacylation4.90E-04
30GO:1902458: positive regulation of stomatal opening4.90E-04
31GO:0050801: ion homeostasis4.90E-04
32GO:0000023: maltose metabolic process4.90E-04
33GO:0006419: alanyl-tRNA aminoacylation4.90E-04
34GO:0043266: regulation of potassium ion transport4.90E-04
35GO:0006438: valyl-tRNA aminoacylation4.90E-04
36GO:0010480: microsporocyte differentiation4.90E-04
37GO:0042371: vitamin K biosynthetic process4.90E-04
38GO:0006400: tRNA modification4.99E-04
39GO:0046620: regulation of organ growth6.22E-04
40GO:0006353: DNA-templated transcription, termination6.22E-04
41GO:0009790: embryo development7.53E-04
42GO:0006002: fructose 6-phosphate metabolic process7.58E-04
43GO:0042550: photosystem I stabilization1.05E-03
44GO:0001682: tRNA 5'-leader removal1.05E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.05E-03
46GO:0006420: arginyl-tRNA aminoacylation1.05E-03
47GO:0009629: response to gravity1.05E-03
48GO:0080005: photosystem stoichiometry adjustment1.05E-03
49GO:0006739: NADP metabolic process1.05E-03
50GO:0060359: response to ammonium ion1.05E-03
51GO:0048255: mRNA stabilization1.05E-03
52GO:1902326: positive regulation of chlorophyll biosynthetic process1.05E-03
53GO:0007154: cell communication1.05E-03
54GO:0018026: peptidyl-lysine monomethylation1.05E-03
55GO:0071497: cellular response to freezing1.05E-03
56GO:0042325: regulation of phosphorylation1.05E-03
57GO:0009220: pyrimidine ribonucleotide biosynthetic process1.05E-03
58GO:0006423: cysteinyl-tRNA aminoacylation1.05E-03
59GO:1904143: positive regulation of carotenoid biosynthetic process1.05E-03
60GO:0045036: protein targeting to chloroplast1.24E-03
61GO:0006096: glycolytic process1.45E-03
62GO:0010027: thylakoid membrane organization1.55E-03
63GO:0043157: response to cation stress1.72E-03
64GO:0005977: glycogen metabolic process1.72E-03
65GO:0010447: response to acidic pH1.72E-03
66GO:0019419: sulfate reduction1.72E-03
67GO:0006000: fructose metabolic process1.72E-03
68GO:0008615: pyridoxine biosynthetic process2.50E-03
69GO:0015696: ammonium transport2.50E-03
70GO:0044211: CTP salvage2.50E-03
71GO:0046739: transport of virus in multicellular host2.50E-03
72GO:2000904: regulation of starch metabolic process2.50E-03
73GO:0006164: purine nucleotide biosynthetic process2.50E-03
74GO:0043572: plastid fission2.50E-03
75GO:0016556: mRNA modification2.50E-03
76GO:2001141: regulation of RNA biosynthetic process2.50E-03
77GO:0019344: cysteine biosynthetic process2.93E-03
78GO:0006418: tRNA aminoacylation for protein translation3.23E-03
79GO:1901141: regulation of lignin biosynthetic process3.36E-03
80GO:0015846: polyamine transport3.36E-03
81GO:0072488: ammonium transmembrane transport3.36E-03
82GO:0006021: inositol biosynthetic process3.36E-03
83GO:0006734: NADH metabolic process3.36E-03
84GO:0044205: 'de novo' UMP biosynthetic process3.36E-03
85GO:0007020: microtubule nucleation3.36E-03
86GO:0044206: UMP salvage3.36E-03
87GO:0010021: amylopectin biosynthetic process3.36E-03
88GO:0006730: one-carbon metabolic process3.89E-03
89GO:0009926: auxin polar transport4.09E-03
90GO:0009107: lipoate biosynthetic process4.31E-03
91GO:0010158: abaxial cell fate specification4.31E-03
92GO:0048578: positive regulation of long-day photoperiodism, flowering4.31E-03
93GO:0046785: microtubule polymerization4.31E-03
94GO:0009904: chloroplast accumulation movement4.31E-03
95GO:0010236: plastoquinone biosynthetic process4.31E-03
96GO:0045038: protein import into chloroplast thylakoid membrane4.31E-03
97GO:0009959: negative gravitropism5.34E-03
98GO:0006655: phosphatidylglycerol biosynthetic process5.34E-03
99GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.34E-03
100GO:0016554: cytidine to uridine editing5.34E-03
101GO:0006206: pyrimidine nucleobase metabolic process5.34E-03
102GO:0009228: thiamine biosynthetic process5.34E-03
103GO:0008033: tRNA processing5.42E-03
104GO:0007166: cell surface receptor signaling pathway5.47E-03
105GO:0009416: response to light stimulus5.53E-03
106GO:0080086: stamen filament development6.44E-03
107GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.44E-03
108GO:2000067: regulation of root morphogenesis6.44E-03
109GO:0042372: phylloquinone biosynthetic process6.44E-03
110GO:0009955: adaxial/abaxial pattern specification6.44E-03
111GO:0006458: 'de novo' protein folding6.44E-03
112GO:0017148: negative regulation of translation6.44E-03
113GO:0009942: longitudinal axis specification6.44E-03
114GO:0042026: protein refolding6.44E-03
115GO:0034389: lipid particle organization6.44E-03
116GO:0009903: chloroplast avoidance movement6.44E-03
117GO:1901259: chloroplast rRNA processing6.44E-03
118GO:0048528: post-embryonic root development7.62E-03
119GO:0009772: photosynthetic electron transport in photosystem II7.62E-03
120GO:0010050: vegetative phase change7.62E-03
121GO:0010444: guard mother cell differentiation7.62E-03
122GO:0048437: floral organ development7.62E-03
123GO:0010196: nonphotochemical quenching7.62E-03
124GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.62E-03
125GO:0032502: developmental process7.72E-03
126GO:0009630: gravitropism7.72E-03
127GO:0010583: response to cyclopentenone7.72E-03
128GO:0009828: plant-type cell wall loosening8.77E-03
129GO:0000105: histidine biosynthetic process8.87E-03
130GO:0006402: mRNA catabolic process8.87E-03
131GO:0001522: pseudouridine synthesis8.87E-03
132GO:0048564: photosystem I assembly8.87E-03
133GO:0009850: auxin metabolic process8.87E-03
134GO:0019375: galactolipid biosynthetic process8.87E-03
135GO:0009704: de-etiolation8.87E-03
136GO:0042255: ribosome assembly8.87E-03
137GO:2000070: regulation of response to water deprivation8.87E-03
138GO:0070413: trehalose metabolism in response to stress8.87E-03
139GO:0000910: cytokinesis9.90E-03
140GO:0009932: cell tip growth1.02E-02
141GO:0071482: cellular response to light stimulus1.02E-02
142GO:0010052: guard cell differentiation1.02E-02
143GO:0006526: arginine biosynthetic process1.02E-02
144GO:0010497: plasmodesmata-mediated intercellular transport1.02E-02
145GO:0032544: plastid translation1.02E-02
146GO:0007389: pattern specification process1.02E-02
147GO:0009734: auxin-activated signaling pathway1.15E-02
148GO:0006098: pentose-phosphate shunt1.16E-02
149GO:0019432: triglyceride biosynthetic process1.16E-02
150GO:0010411: xyloglucan metabolic process1.24E-02
151GO:0042761: very long-chain fatty acid biosynthetic process1.30E-02
152GO:0009638: phototropism1.30E-02
153GO:0043067: regulation of programmed cell death1.30E-02
154GO:0009098: leucine biosynthetic process1.30E-02
155GO:1900865: chloroplast RNA modification1.30E-02
156GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.30E-02
157GO:0031425: chloroplast RNA processing1.30E-02
158GO:0006949: syncytium formation1.45E-02
159GO:0006259: DNA metabolic process1.45E-02
160GO:0006535: cysteine biosynthetic process from serine1.45E-02
161GO:0000103: sulfate assimilation1.45E-02
162GO:0010015: root morphogenesis1.61E-02
163GO:0006265: DNA topological change1.61E-02
164GO:0009089: lysine biosynthetic process via diaminopimelate1.61E-02
165GO:1903507: negative regulation of nucleic acid-templated transcription1.61E-02
166GO:0006352: DNA-templated transcription, initiation1.61E-02
167GO:0048229: gametophyte development1.61E-02
168GO:0009637: response to blue light1.74E-02
169GO:0006790: sulfur compound metabolic process1.78E-02
170GO:0005983: starch catabolic process1.78E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process1.78E-02
172GO:0010582: floral meristem determinacy1.78E-02
173GO:0050826: response to freezing1.94E-02
174GO:0010075: regulation of meristem growth1.94E-02
175GO:0006094: gluconeogenesis1.94E-02
176GO:2000012: regulation of auxin polar transport1.94E-02
177GO:0009785: blue light signaling pathway1.94E-02
178GO:0009934: regulation of meristem structural organization2.12E-02
179GO:0010207: photosystem II assembly2.12E-02
180GO:0010114: response to red light2.25E-02
181GO:0008283: cell proliferation2.25E-02
182GO:0046854: phosphatidylinositol phosphorylation2.30E-02
183GO:0010039: response to iron ion2.30E-02
184GO:0090351: seedling development2.30E-02
185GO:0042546: cell wall biogenesis2.34E-02
186GO:0006071: glycerol metabolic process2.48E-02
187GO:0010025: wax biosynthetic process2.48E-02
188GO:0005992: trehalose biosynthetic process2.67E-02
189GO:0009116: nucleoside metabolic process2.67E-02
190GO:0009664: plant-type cell wall organization2.83E-02
191GO:0019953: sexual reproduction2.87E-02
192GO:0043622: cortical microtubule organization2.87E-02
193GO:0006364: rRNA processing3.04E-02
194GO:0031408: oxylipin biosynthetic process3.07E-02
195GO:0061077: chaperone-mediated protein folding3.07E-02
196GO:0016998: cell wall macromolecule catabolic process3.07E-02
197GO:0031348: negative regulation of defense response3.27E-02
198GO:0080092: regulation of pollen tube growth3.27E-02
199GO:0016226: iron-sulfur cluster assembly3.27E-02
200GO:2000022: regulation of jasmonic acid mediated signaling pathway3.27E-02
201GO:0007005: mitochondrion organization3.27E-02
202GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.48E-02
203GO:0010082: regulation of root meristem growth3.48E-02
204GO:0009306: protein secretion3.70E-02
205GO:0009409: response to cold3.79E-02
206GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.91E-02
207GO:0048653: anther development4.14E-02
208GO:0000226: microtubule cytoskeleton organization4.14E-02
209GO:0009624: response to nematode4.31E-02
210GO:0048868: pollen tube development4.36E-02
211GO:0009741: response to brassinosteroid4.36E-02
212GO:0006662: glycerol ether metabolic process4.36E-02
213GO:0010197: polar nucleus fusion4.36E-02
214GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.44E-02
215GO:0009742: brassinosteroid mediated signaling pathway4.57E-02
216GO:0007059: chromosome segregation4.59E-02
217GO:0009646: response to absence of light4.59E-02
218GO:0048544: recognition of pollen4.59E-02
219GO:0046777: protein autophosphorylation4.62E-02
220GO:0055072: iron ion homeostasis4.83E-02
221GO:0009851: auxin biosynthetic process4.83E-02
222GO:0019252: starch biosynthetic process4.83E-02
223GO:0008654: phospholipid biosynthetic process4.83E-02
RankGO TermAdjusted P value
1GO:0004358: glutamate N-acetyltransferase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0003937: IMP cyclohydrolase activity0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0019808: polyamine binding0.00E+00
8GO:0005363: maltose transmembrane transporter activity0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0004401: histidinol-phosphatase activity0.00E+00
13GO:0004056: argininosuccinate lyase activity0.00E+00
14GO:0003723: RNA binding7.94E-06
15GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity7.70E-05
16GO:0004519: endonuclease activity1.41E-04
17GO:0004176: ATP-dependent peptidase activity3.94E-04
18GO:0010347: L-galactose-1-phosphate phosphatase activity4.90E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity4.90E-04
20GO:0046480: galactolipid galactosyltransferase activity4.90E-04
21GO:0005227: calcium activated cation channel activity4.90E-04
22GO:0004733: pyridoxamine-phosphate oxidase activity4.90E-04
23GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.90E-04
24GO:0004813: alanine-tRNA ligase activity4.90E-04
25GO:0046481: digalactosyldiacylglycerol synthase activity4.90E-04
26GO:0004832: valine-tRNA ligase activity4.90E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.90E-04
28GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.90E-04
29GO:0052857: NADPHX epimerase activity4.90E-04
30GO:0004830: tryptophan-tRNA ligase activity4.90E-04
31GO:0010285: L,L-diaminopimelate aminotransferase activity4.90E-04
32GO:0052856: NADHX epimerase activity4.90E-04
33GO:0005525: GTP binding5.68E-04
34GO:0003852: 2-isopropylmalate synthase activity1.05E-03
35GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.05E-03
36GO:0004814: arginine-tRNA ligase activity1.05E-03
37GO:0009977: proton motive force dependent protein transmembrane transporter activity1.05E-03
38GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.05E-03
39GO:0016415: octanoyltransferase activity1.05E-03
40GO:0004047: aminomethyltransferase activity1.05E-03
41GO:0009973: adenylyl-sulfate reductase activity1.05E-03
42GO:0052832: inositol monophosphate 3-phosphatase activity1.05E-03
43GO:0004817: cysteine-tRNA ligase activity1.05E-03
44GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.05E-03
45GO:0019156: isoamylase activity1.05E-03
46GO:0008934: inositol monophosphate 1-phosphatase activity1.05E-03
47GO:0052833: inositol monophosphate 4-phosphatase activity1.05E-03
48GO:0017118: lipoyltransferase activity1.05E-03
49GO:0008237: metallopeptidase activity1.34E-03
50GO:0052692: raffinose alpha-galactosidase activity1.72E-03
51GO:0070330: aromatase activity1.72E-03
52GO:0017150: tRNA dihydrouridine synthase activity1.72E-03
53GO:0004557: alpha-galactosidase activity1.72E-03
54GO:0009982: pseudouridine synthase activity1.87E-03
55GO:0043023: ribosomal large subunit binding2.50E-03
56GO:0035250: UDP-galactosyltransferase activity2.50E-03
57GO:0016656: monodehydroascorbate reductase (NADH) activity2.50E-03
58GO:0016851: magnesium chelatase activity2.50E-03
59GO:0004659: prenyltransferase activity3.36E-03
60GO:0016279: protein-lysine N-methyltransferase activity3.36E-03
61GO:0001053: plastid sigma factor activity3.36E-03
62GO:0004845: uracil phosphoribosyltransferase activity3.36E-03
63GO:0016987: sigma factor activity3.36E-03
64GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.00E-03
65GO:0005275: amine transmembrane transporter activity4.31E-03
66GO:0018685: alkane 1-monooxygenase activity4.31E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor4.31E-03
68GO:0043621: protein self-association4.52E-03
69GO:0004812: aminoacyl-tRNA ligase activity5.01E-03
70GO:0008519: ammonium transmembrane transporter activity5.34E-03
71GO:2001070: starch binding5.34E-03
72GO:0004605: phosphatidate cytidylyltransferase activity5.34E-03
73GO:0004332: fructose-bisphosphate aldolase activity5.34E-03
74GO:0004526: ribonuclease P activity5.34E-03
75GO:0004556: alpha-amylase activity5.34E-03
76GO:0004124: cysteine synthase activity6.44E-03
77GO:0008195: phosphatidate phosphatase activity6.44E-03
78GO:0004849: uridine kinase activity6.44E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.44E-03
80GO:0004144: diacylglycerol O-acyltransferase activity6.44E-03
81GO:0016762: xyloglucan:xyloglucosyl transferase activity7.22E-03
82GO:0003872: 6-phosphofructokinase activity7.62E-03
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.24E-03
84GO:0043022: ribosome binding8.87E-03
85GO:0016597: amino acid binding9.90E-03
86GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.02E-02
87GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.02E-02
88GO:0050660: flavin adenine dinucleotide binding1.08E-02
89GO:0016798: hydrolase activity, acting on glycosyl bonds1.24E-02
90GO:0019843: rRNA binding1.25E-02
91GO:0009672: auxin:proton symporter activity1.30E-02
92GO:0004713: protein tyrosine kinase activity1.45E-02
93GO:0004805: trehalose-phosphatase activity1.45E-02
94GO:0004222: metalloendopeptidase activity1.52E-02
95GO:0008565: protein transporter activity1.58E-02
96GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.59E-02
97GO:0044183: protein binding involved in protein folding1.61E-02
98GO:0005089: Rho guanyl-nucleotide exchange factor activity1.61E-02
99GO:0016301: kinase activity1.74E-02
100GO:0003746: translation elongation factor activity1.74E-02
101GO:0000049: tRNA binding1.78E-02
102GO:0003993: acid phosphatase activity1.82E-02
103GO:0004089: carbonate dehydratase activity1.94E-02
104GO:0019888: protein phosphatase regulator activity1.94E-02
105GO:0004565: beta-galactosidase activity1.94E-02
106GO:0010329: auxin efflux transmembrane transporter activity1.94E-02
107GO:0005524: ATP binding2.10E-02
108GO:0003924: GTPase activity2.16E-02
109GO:0009055: electron carrier activity2.40E-02
110GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.48E-02
111GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.48E-02
112GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.48E-02
113GO:0051536: iron-sulfur cluster binding2.67E-02
114GO:0003714: transcription corepressor activity2.67E-02
115GO:0015079: potassium ion transmembrane transporter activity2.87E-02
116GO:0005345: purine nucleobase transmembrane transporter activity2.87E-02
117GO:0008408: 3'-5' exonuclease activity3.07E-02
118GO:0033612: receptor serine/threonine kinase binding3.07E-02
119GO:0003964: RNA-directed DNA polymerase activity3.07E-02
120GO:0003690: double-stranded DNA binding3.14E-02
121GO:0003727: single-stranded RNA binding3.70E-02
122GO:0047134: protein-disulfide reductase activity3.91E-02
123GO:0003713: transcription coactivator activity4.36E-02
124GO:0008536: Ran GTPase binding4.36E-02
125GO:0004527: exonuclease activity4.36E-02
126GO:0004791: thioredoxin-disulfide reductase activity4.59E-02
127GO:0010181: FMN binding4.59E-02
128GO:0019901: protein kinase binding4.83E-02
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Gene type



Gene DE type