GO Enrichment Analysis of Co-expressed Genes with
AT4G09890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080127: fruit septum development | 0.00E+00 |
| 2 | GO:0033206: meiotic cytokinesis | 0.00E+00 |
| 3 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 4 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 5 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 6 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 7 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 8 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 9 | GO:0009606: tropism | 0.00E+00 |
| 10 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 11 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 12 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 13 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 14 | GO:0042793: transcription from plastid promoter | 5.47E-08 |
| 15 | GO:0010569: regulation of double-strand break repair via homologous recombination | 1.03E-05 |
| 16 | GO:0009734: auxin-activated signaling pathway | 6.04E-05 |
| 17 | GO:1900864: mitochondrial RNA modification | 1.31E-04 |
| 18 | GO:2000038: regulation of stomatal complex development | 1.31E-04 |
| 19 | GO:0080188: RNA-directed DNA methylation | 2.20E-04 |
| 20 | GO:0009913: epidermal cell differentiation | 2.85E-04 |
| 21 | GO:2000377: regulation of reactive oxygen species metabolic process | 2.96E-04 |
| 22 | GO:2000033: regulation of seed dormancy process | 3.82E-04 |
| 23 | GO:0009733: response to auxin | 4.30E-04 |
| 24 | GO:0034757: negative regulation of iron ion transport | 4.84E-04 |
| 25 | GO:0080112: seed growth | 4.84E-04 |
| 26 | GO:0043971: histone H3-K18 acetylation | 4.84E-04 |
| 27 | GO:1905039: carboxylic acid transmembrane transport | 4.84E-04 |
| 28 | GO:1905200: gibberellic acid transmembrane transport | 4.84E-04 |
| 29 | GO:1903866: palisade mesophyll development | 4.84E-04 |
| 30 | GO:0009416: response to light stimulus | 4.97E-04 |
| 31 | GO:0009658: chloroplast organization | 5.14E-04 |
| 32 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 6.11E-04 |
| 33 | GO:0042255: ribosome assembly | 6.11E-04 |
| 34 | GO:0046620: regulation of organ growth | 6.11E-04 |
| 35 | GO:0006353: DNA-templated transcription, termination | 6.11E-04 |
| 36 | GO:0000373: Group II intron splicing | 8.92E-04 |
| 37 | GO:0009451: RNA modification | 1.02E-03 |
| 38 | GO:0009662: etioplast organization | 1.04E-03 |
| 39 | GO:1900033: negative regulation of trichome patterning | 1.04E-03 |
| 40 | GO:0080009: mRNA methylation | 1.04E-03 |
| 41 | GO:2000123: positive regulation of stomatal complex development | 1.04E-03 |
| 42 | GO:1901529: positive regulation of anion channel activity | 1.04E-03 |
| 43 | GO:0010271: regulation of chlorophyll catabolic process | 1.04E-03 |
| 44 | GO:1900865: chloroplast RNA modification | 1.05E-03 |
| 45 | GO:0048829: root cap development | 1.22E-03 |
| 46 | GO:0010029: regulation of seed germination | 1.63E-03 |
| 47 | GO:0030029: actin filament-based process | 1.70E-03 |
| 48 | GO:0009432: SOS response | 1.70E-03 |
| 49 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 1.70E-03 |
| 50 | GO:0080117: secondary growth | 1.70E-03 |
| 51 | GO:0090391: granum assembly | 1.70E-03 |
| 52 | GO:0006518: peptide metabolic process | 1.70E-03 |
| 53 | GO:0071705: nitrogen compound transport | 1.70E-03 |
| 54 | GO:0010588: cotyledon vascular tissue pattern formation | 1.84E-03 |
| 55 | GO:0010102: lateral root morphogenesis | 1.84E-03 |
| 56 | GO:1902290: positive regulation of defense response to oomycetes | 2.47E-03 |
| 57 | GO:0000730: DNA recombinase assembly | 2.47E-03 |
| 58 | GO:0010371: regulation of gibberellin biosynthetic process | 2.47E-03 |
| 59 | GO:1902476: chloride transmembrane transport | 2.47E-03 |
| 60 | GO:0010239: chloroplast mRNA processing | 2.47E-03 |
| 61 | GO:0007276: gamete generation | 2.47E-03 |
| 62 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 2.47E-03 |
| 63 | GO:0009800: cinnamic acid biosynthetic process | 2.47E-03 |
| 64 | GO:0006351: transcription, DNA-templated | 2.67E-03 |
| 65 | GO:0009863: salicylic acid mediated signaling pathway | 2.88E-03 |
| 66 | GO:0010187: negative regulation of seed germination | 2.88E-03 |
| 67 | GO:0006355: regulation of transcription, DNA-templated | 2.93E-03 |
| 68 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.28E-03 |
| 69 | GO:0006808: regulation of nitrogen utilization | 3.32E-03 |
| 70 | GO:0006479: protein methylation | 3.32E-03 |
| 71 | GO:0048629: trichome patterning | 3.32E-03 |
| 72 | GO:0071249: cellular response to nitrate | 3.32E-03 |
| 73 | GO:0006221: pyrimidine nucleotide biosynthetic process | 3.32E-03 |
| 74 | GO:0030001: metal ion transport | 3.42E-03 |
| 75 | GO:0003333: amino acid transmembrane transport | 3.49E-03 |
| 76 | GO:0040008: regulation of growth | 4.04E-03 |
| 77 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.17E-03 |
| 78 | GO:0048497: maintenance of floral organ identity | 4.26E-03 |
| 79 | GO:0032876: negative regulation of DNA endoreduplication | 4.26E-03 |
| 80 | GO:0030308: negative regulation of cell growth | 4.26E-03 |
| 81 | GO:0010375: stomatal complex patterning | 4.26E-03 |
| 82 | GO:0006284: base-excision repair | 4.54E-03 |
| 83 | GO:0009643: photosynthetic acclimation | 5.27E-03 |
| 84 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 5.27E-03 |
| 85 | GO:0009959: negative gravitropism | 5.27E-03 |
| 86 | GO:0016554: cytidine to uridine editing | 5.27E-03 |
| 87 | GO:0042176: regulation of protein catabolic process | 5.27E-03 |
| 88 | GO:0010315: auxin efflux | 5.27E-03 |
| 89 | GO:1902456: regulation of stomatal opening | 5.27E-03 |
| 90 | GO:0006559: L-phenylalanine catabolic process | 5.27E-03 |
| 91 | GO:0048831: regulation of shoot system development | 5.27E-03 |
| 92 | GO:0003006: developmental process involved in reproduction | 5.27E-03 |
| 93 | GO:0010087: phloem or xylem histogenesis | 5.32E-03 |
| 94 | GO:0010305: leaf vascular tissue pattern formation | 5.74E-03 |
| 95 | GO:0006281: DNA repair | 6.14E-03 |
| 96 | GO:0048509: regulation of meristem development | 6.36E-03 |
| 97 | GO:2000037: regulation of stomatal complex patterning | 6.36E-03 |
| 98 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 6.36E-03 |
| 99 | GO:0010310: regulation of hydrogen peroxide metabolic process | 6.36E-03 |
| 100 | GO:0009955: adaxial/abaxial pattern specification | 6.36E-03 |
| 101 | GO:0048825: cotyledon development | 6.62E-03 |
| 102 | GO:0080156: mitochondrial mRNA modification | 7.10E-03 |
| 103 | GO:0010103: stomatal complex morphogenesis | 7.52E-03 |
| 104 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 7.52E-03 |
| 105 | GO:0006955: immune response | 7.52E-03 |
| 106 | GO:0042148: strand invasion | 7.52E-03 |
| 107 | GO:0006821: chloride transport | 7.52E-03 |
| 108 | GO:0009793: embryo development ending in seed dormancy | 8.01E-03 |
| 109 | GO:0009740: gibberellic acid mediated signaling pathway | 8.52E-03 |
| 110 | GO:0009828: plant-type cell wall loosening | 8.62E-03 |
| 111 | GO:0010492: maintenance of shoot apical meristem identity | 8.76E-03 |
| 112 | GO:0052543: callose deposition in cell wall | 8.76E-03 |
| 113 | GO:0009642: response to light intensity | 8.76E-03 |
| 114 | GO:0001522: pseudouridine synthesis | 8.76E-03 |
| 115 | GO:0048766: root hair initiation | 8.76E-03 |
| 116 | GO:0032544: plastid translation | 1.01E-02 |
| 117 | GO:0007389: pattern specification process | 1.01E-02 |
| 118 | GO:0044030: regulation of DNA methylation | 1.01E-02 |
| 119 | GO:0009880: embryonic pattern specification | 1.01E-02 |
| 120 | GO:0009827: plant-type cell wall modification | 1.01E-02 |
| 121 | GO:0010212: response to ionizing radiation | 1.01E-02 |
| 122 | GO:0007186: G-protein coupled receptor signaling pathway | 1.01E-02 |
| 123 | GO:0019430: removal of superoxide radicals | 1.01E-02 |
| 124 | GO:0010233: phloem transport | 1.01E-02 |
| 125 | GO:0048589: developmental growth | 1.14E-02 |
| 126 | GO:0009245: lipid A biosynthetic process | 1.14E-02 |
| 127 | GO:0048507: meristem development | 1.14E-02 |
| 128 | GO:0016573: histone acetylation | 1.29E-02 |
| 129 | GO:1900426: positive regulation of defense response to bacterium | 1.29E-02 |
| 130 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.29E-02 |
| 131 | GO:0006349: regulation of gene expression by genetic imprinting | 1.29E-02 |
| 132 | GO:0016571: histone methylation | 1.29E-02 |
| 133 | GO:0009845: seed germination | 1.36E-02 |
| 134 | GO:0006949: syncytium formation | 1.44E-02 |
| 135 | GO:0031627: telomeric loop formation | 1.44E-02 |
| 136 | GO:0010048: vernalization response | 1.44E-02 |
| 137 | GO:0006535: cysteine biosynthetic process from serine | 1.44E-02 |
| 138 | GO:0010218: response to far red light | 1.49E-02 |
| 139 | GO:0045892: negative regulation of transcription, DNA-templated | 1.57E-02 |
| 140 | GO:0009750: response to fructose | 1.59E-02 |
| 141 | GO:0048765: root hair cell differentiation | 1.59E-02 |
| 142 | GO:0046856: phosphatidylinositol dephosphorylation | 1.59E-02 |
| 143 | GO:0015770: sucrose transport | 1.59E-02 |
| 144 | GO:0006865: amino acid transport | 1.64E-02 |
| 145 | GO:0009867: jasmonic acid mediated signaling pathway | 1.71E-02 |
| 146 | GO:0008361: regulation of cell size | 1.75E-02 |
| 147 | GO:0006312: mitotic recombination | 1.75E-02 |
| 148 | GO:0012501: programmed cell death | 1.75E-02 |
| 149 | GO:0015706: nitrate transport | 1.75E-02 |
| 150 | GO:0010152: pollen maturation | 1.75E-02 |
| 151 | GO:0010582: floral meristem determinacy | 1.75E-02 |
| 152 | GO:0009887: animal organ morphogenesis | 2.09E-02 |
| 153 | GO:0009266: response to temperature stimulus | 2.09E-02 |
| 154 | GO:0048467: gynoecium development | 2.09E-02 |
| 155 | GO:0010020: chloroplast fission | 2.09E-02 |
| 156 | GO:0006270: DNA replication initiation | 2.09E-02 |
| 157 | GO:0009739: response to gibberellin | 2.13E-02 |
| 158 | GO:0009926: auxin polar transport | 2.21E-02 |
| 159 | GO:0008283: cell proliferation | 2.21E-02 |
| 160 | GO:0048364: root development | 2.24E-02 |
| 161 | GO:0010167: response to nitrate | 2.27E-02 |
| 162 | GO:0009901: anther dehiscence | 2.27E-02 |
| 163 | GO:0008380: RNA splicing | 2.31E-02 |
| 164 | GO:0006071: glycerol metabolic process | 2.45E-02 |
| 165 | GO:0019344: cysteine biosynthetic process | 2.64E-02 |
| 166 | GO:0006338: chromatin remodeling | 2.64E-02 |
| 167 | GO:0080147: root hair cell development | 2.64E-02 |
| 168 | GO:0009664: plant-type cell wall organization | 2.78E-02 |
| 169 | GO:0042538: hyperosmotic salinity response | 2.78E-02 |
| 170 | GO:0010073: meristem maintenance | 2.83E-02 |
| 171 | GO:0006825: copper ion transport | 2.83E-02 |
| 172 | GO:0006874: cellular calcium ion homeostasis | 2.83E-02 |
| 173 | GO:0016998: cell wall macromolecule catabolic process | 3.03E-02 |
| 174 | GO:0010431: seed maturation | 3.03E-02 |
| 175 | GO:0071215: cellular response to abscisic acid stimulus | 3.44E-02 |
| 176 | GO:0010082: regulation of root meristem growth | 3.44E-02 |
| 177 | GO:0006970: response to osmotic stress | 3.51E-02 |
| 178 | GO:0048367: shoot system development | 3.64E-02 |
| 179 | GO:0048443: stamen development | 3.65E-02 |
| 180 | GO:0042127: regulation of cell proliferation | 3.65E-02 |
| 181 | GO:0009723: response to ethylene | 3.83E-02 |
| 182 | GO:0070417: cellular response to cold | 3.86E-02 |
| 183 | GO:0016569: covalent chromatin modification | 3.99E-02 |
| 184 | GO:0080022: primary root development | 4.08E-02 |
| 185 | GO:0010501: RNA secondary structure unwinding | 4.08E-02 |
| 186 | GO:0010051: xylem and phloem pattern formation | 4.08E-02 |
| 187 | GO:0010118: stomatal movement | 4.08E-02 |
| 188 | GO:0042631: cellular response to water deprivation | 4.08E-02 |
| 189 | GO:0042335: cuticle development | 4.08E-02 |
| 190 | GO:0046323: glucose import | 4.31E-02 |
| 191 | GO:0009960: endosperm development | 4.31E-02 |
| 192 | GO:0009958: positive gravitropism | 4.31E-02 |
| 193 | GO:0071472: cellular response to salt stress | 4.31E-02 |
| 194 | GO:0007018: microtubule-based movement | 4.54E-02 |
| 195 | GO:0009749: response to glucose | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 2 | GO:0003697: single-stranded DNA binding | 5.65E-05 |
| 3 | GO:0003723: RNA binding | 7.14E-05 |
| 4 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.02E-04 |
| 5 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 4.84E-04 |
| 6 | GO:0004016: adenylate cyclase activity | 4.84E-04 |
| 7 | GO:1905201: gibberellin transmembrane transporter activity | 4.84E-04 |
| 8 | GO:0042834: peptidoglycan binding | 4.84E-04 |
| 9 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.84E-04 |
| 10 | GO:0016274: protein-arginine N-methyltransferase activity | 4.84E-04 |
| 11 | GO:0003727: single-stranded RNA binding | 5.43E-04 |
| 12 | GO:0004519: endonuclease activity | 5.62E-04 |
| 13 | GO:0000989: transcription factor activity, transcription factor binding | 8.92E-04 |
| 14 | GO:0008805: carbon-monoxide oxygenase activity | 1.04E-03 |
| 15 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.04E-03 |
| 16 | GO:0009884: cytokinin receptor activity | 1.04E-03 |
| 17 | GO:0003690: double-stranded DNA binding | 1.15E-03 |
| 18 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.70E-03 |
| 19 | GO:0016805: dipeptidase activity | 1.70E-03 |
| 20 | GO:0005034: osmosensor activity | 1.70E-03 |
| 21 | GO:0017150: tRNA dihydrouridine synthase activity | 1.70E-03 |
| 22 | GO:0045548: phenylalanine ammonia-lyase activity | 1.70E-03 |
| 23 | GO:0009982: pseudouridine synthase activity | 1.84E-03 |
| 24 | GO:0003725: double-stranded RNA binding | 1.84E-03 |
| 25 | GO:0001872: (1->3)-beta-D-glucan binding | 2.47E-03 |
| 26 | GO:0005354: galactose transmembrane transporter activity | 2.47E-03 |
| 27 | GO:0009041: uridylate kinase activity | 2.47E-03 |
| 28 | GO:0043565: sequence-specific DNA binding | 2.56E-03 |
| 29 | GO:0010011: auxin binding | 3.32E-03 |
| 30 | GO:0010328: auxin influx transmembrane transporter activity | 3.32E-03 |
| 31 | GO:0010385: double-stranded methylated DNA binding | 3.32E-03 |
| 32 | GO:0004930: G-protein coupled receptor activity | 3.32E-03 |
| 33 | GO:0005253: anion channel activity | 3.32E-03 |
| 34 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.04E-03 |
| 35 | GO:0030570: pectate lyase activity | 4.17E-03 |
| 36 | GO:0004871: signal transducer activity | 4.61E-03 |
| 37 | GO:0003677: DNA binding | 5.18E-03 |
| 38 | GO:0005247: voltage-gated chloride channel activity | 5.27E-03 |
| 39 | GO:0003688: DNA replication origin binding | 5.27E-03 |
| 40 | GO:0004784: superoxide dismutase activity | 5.27E-03 |
| 41 | GO:0031177: phosphopantetheine binding | 5.27E-03 |
| 42 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 5.27E-03 |
| 43 | GO:0019900: kinase binding | 6.36E-03 |
| 44 | GO:0004124: cysteine synthase activity | 6.36E-03 |
| 45 | GO:0016832: aldehyde-lyase activity | 6.36E-03 |
| 46 | GO:0000035: acyl binding | 6.36E-03 |
| 47 | GO:0019901: protein kinase binding | 6.62E-03 |
| 48 | GO:0000150: recombinase activity | 7.52E-03 |
| 49 | GO:0004520: endodeoxyribonuclease activity | 8.76E-03 |
| 50 | GO:0000400: four-way junction DNA binding | 8.76E-03 |
| 51 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 8.76E-03 |
| 52 | GO:0005200: structural constituent of cytoskeleton | 9.16E-03 |
| 53 | GO:0008237: metallopeptidase activity | 9.16E-03 |
| 54 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 1.14E-02 |
| 55 | GO:0019843: rRNA binding | 1.23E-02 |
| 56 | GO:0009672: auxin:proton symporter activity | 1.29E-02 |
| 57 | GO:0004673: protein histidine kinase activity | 1.44E-02 |
| 58 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.45E-02 |
| 59 | GO:0004222: metalloendopeptidase activity | 1.49E-02 |
| 60 | GO:0008559: xenobiotic-transporting ATPase activity | 1.59E-02 |
| 61 | GO:0003691: double-stranded telomeric DNA binding | 1.59E-02 |
| 62 | GO:0008515: sucrose transmembrane transporter activity | 1.59E-02 |
| 63 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.75E-02 |
| 64 | GO:0031072: heat shock protein binding | 1.92E-02 |
| 65 | GO:0000155: phosphorelay sensor kinase activity | 1.92E-02 |
| 66 | GO:0010329: auxin efflux transmembrane transporter activity | 1.92E-02 |
| 67 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.92E-02 |
| 68 | GO:0005515: protein binding | 2.05E-02 |
| 69 | GO:0004970: ionotropic glutamate receptor activity | 2.27E-02 |
| 70 | GO:0004190: aspartic-type endopeptidase activity | 2.27E-02 |
| 71 | GO:0051119: sugar transmembrane transporter activity | 2.27E-02 |
| 72 | GO:0005217: intracellular ligand-gated ion channel activity | 2.27E-02 |
| 73 | GO:0043621: protein self-association | 2.40E-02 |
| 74 | GO:0015293: symporter activity | 2.49E-02 |
| 75 | GO:0043424: protein histidine kinase binding | 2.83E-02 |
| 76 | GO:0008094: DNA-dependent ATPase activity | 3.03E-02 |
| 77 | GO:0004176: ATP-dependent peptidase activity | 3.03E-02 |
| 78 | GO:0016788: hydrolase activity, acting on ester bonds | 3.27E-02 |
| 79 | GO:0003777: microtubule motor activity | 3.31E-02 |
| 80 | GO:0015171: amino acid transmembrane transporter activity | 3.31E-02 |
| 81 | GO:0008289: lipid binding | 3.42E-02 |
| 82 | GO:0018024: histone-lysine N-methyltransferase activity | 3.86E-02 |
| 83 | GO:0004650: polygalacturonase activity | 3.87E-02 |
| 84 | GO:0004402: histone acetyltransferase activity | 4.08E-02 |
| 85 | GO:0003779: actin binding | 4.12E-02 |
| 86 | GO:0003713: transcription coactivator activity | 4.31E-02 |
| 87 | GO:0001085: RNA polymerase II transcription factor binding | 4.31E-02 |
| 88 | GO:0008026: ATP-dependent helicase activity | 4.49E-02 |
| 89 | GO:0005355: glucose transmembrane transporter activity | 4.54E-02 |
| 90 | GO:0052689: carboxylic ester hydrolase activity | 4.71E-02 |
| 91 | GO:0004674: protein serine/threonine kinase activity | 4.87E-02 |
| 92 | GO:0048038: quinone binding | 5.00E-02 |