Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010335: response to non-ionic osmotic stress0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:0015717: triose phosphate transport0.00E+00
7GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
8GO:0034337: RNA folding0.00E+00
9GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
10GO:0006982: response to lipid hydroperoxide0.00E+00
11GO:0002184: cytoplasmic translational termination0.00E+00
12GO:0015995: chlorophyll biosynthetic process1.12E-16
13GO:0015979: photosynthesis7.08E-13
14GO:0055114: oxidation-reduction process1.63E-08
15GO:0009735: response to cytokinin1.90E-07
16GO:0006094: gluconeogenesis6.86E-07
17GO:0010207: photosystem II assembly9.18E-07
18GO:0019253: reductive pentose-phosphate cycle9.18E-07
19GO:1902326: positive regulation of chlorophyll biosynthetic process2.70E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process2.70E-06
21GO:0009658: chloroplast organization4.55E-06
22GO:0032544: plastid translation6.65E-06
23GO:0006783: heme biosynthetic process9.29E-06
24GO:0006000: fructose metabolic process9.82E-06
25GO:0019252: starch biosynthetic process1.27E-05
26GO:0009773: photosynthetic electron transport in photosystem I2.13E-05
27GO:0010600: regulation of auxin biosynthetic process4.05E-05
28GO:0010021: amylopectin biosynthetic process4.05E-05
29GO:0018298: protein-chromophore linkage5.28E-05
30GO:0034599: cellular response to oxidative stress8.97E-05
31GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.30E-04
32GO:0010928: regulation of auxin mediated signaling pathway2.19E-04
33GO:0009704: de-etiolation2.19E-04
34GO:0048564: photosystem I assembly2.19E-04
35GO:0009090: homoserine biosynthetic process2.41E-04
36GO:0046467: membrane lipid biosynthetic process2.41E-04
37GO:0043489: RNA stabilization2.41E-04
38GO:0043953: protein transport by the Tat complex2.41E-04
39GO:0051775: response to redox state2.41E-04
40GO:0071277: cellular response to calcium ion2.41E-04
41GO:0000481: maturation of 5S rRNA2.41E-04
42GO:0065002: intracellular protein transmembrane transport2.41E-04
43GO:0006002: fructose 6-phosphate metabolic process2.70E-04
44GO:0010206: photosystem II repair3.27E-04
45GO:0010205: photoinhibition3.89E-04
46GO:0006779: porphyrin-containing compound biosynthetic process3.89E-04
47GO:0006782: protoporphyrinogen IX biosynthetic process4.55E-04
48GO:0018119: peptidyl-cysteine S-nitrosylation5.25E-04
49GO:0042819: vitamin B6 biosynthetic process5.34E-04
50GO:0005986: sucrose biosynthetic process6.81E-04
51GO:0006518: peptide metabolic process8.68E-04
52GO:0035436: triose phosphate transmembrane transport8.68E-04
53GO:0006636: unsaturated fatty acid biosynthetic process9.50E-04
54GO:0010114: response to red light1.09E-03
55GO:0009768: photosynthesis, light harvesting in photosystem I1.16E-03
56GO:0046653: tetrahydrofolate metabolic process1.24E-03
57GO:0006107: oxaloacetate metabolic process1.24E-03
58GO:0033014: tetrapyrrole biosynthetic process1.24E-03
59GO:0008615: pyridoxine biosynthetic process1.24E-03
60GO:0010731: protein glutathionylation1.24E-03
61GO:0042823: pyridoxal phosphate biosynthetic process1.24E-03
62GO:0009067: aspartate family amino acid biosynthetic process1.24E-03
63GO:0006020: inositol metabolic process1.24E-03
64GO:0071484: cellular response to light intensity1.24E-03
65GO:0009152: purine ribonucleotide biosynthetic process1.24E-03
66GO:0031408: oxylipin biosynthetic process1.27E-03
67GO:0009409: response to cold1.53E-03
68GO:0009765: photosynthesis, light harvesting1.65E-03
69GO:0006109: regulation of carbohydrate metabolic process1.65E-03
70GO:0045727: positive regulation of translation1.65E-03
71GO:0015994: chlorophyll metabolic process1.65E-03
72GO:0006536: glutamate metabolic process1.65E-03
73GO:0006546: glycine catabolic process1.65E-03
74GO:0006021: inositol biosynthetic process1.65E-03
75GO:0015713: phosphoglycerate transport1.65E-03
76GO:0006734: NADH metabolic process1.65E-03
77GO:0006412: translation1.67E-03
78GO:0042631: cellular response to water deprivation1.91E-03
79GO:0006096: glycolytic process1.95E-03
80GO:0006520: cellular amino acid metabolic process2.06E-03
81GO:0006662: glycerol ether metabolic process2.06E-03
82GO:0000304: response to singlet oxygen2.11E-03
83GO:0006656: phosphatidylcholine biosynthetic process2.11E-03
84GO:0006564: L-serine biosynthetic process2.11E-03
85GO:0043097: pyrimidine nucleoside salvage2.11E-03
86GO:0009107: lipoate biosynthetic process2.11E-03
87GO:0006206: pyrimidine nucleobase metabolic process2.60E-03
88GO:0046855: inositol phosphate dephosphorylation2.60E-03
89GO:0009643: photosynthetic acclimation2.60E-03
90GO:0010304: PSII associated light-harvesting complex II catabolic process2.60E-03
91GO:0042549: photosystem II stabilization2.60E-03
92GO:1901259: chloroplast rRNA processing3.12E-03
93GO:0010189: vitamin E biosynthetic process3.12E-03
94GO:0009854: oxidative photosynthetic carbon pathway3.12E-03
95GO:0009088: threonine biosynthetic process3.12E-03
96GO:0010027: thylakoid membrane organization3.66E-03
97GO:0010196: nonphotochemical quenching3.68E-03
98GO:1900057: positive regulation of leaf senescence3.68E-03
99GO:0010161: red light signaling pathway3.68E-03
100GO:0009772: photosynthetic electron transport in photosystem II3.68E-03
101GO:0005978: glycogen biosynthetic process4.27E-03
102GO:0009642: response to light intensity4.27E-03
103GO:0032508: DNA duplex unwinding4.27E-03
104GO:0006633: fatty acid biosynthetic process4.38E-03
105GO:0071482: cellular response to light stimulus4.89E-03
106GO:0009657: plastid organization4.89E-03
107GO:0006526: arginine biosynthetic process4.89E-03
108GO:0010218: response to far red light5.26E-03
109GO:0006098: pentose-phosphate shunt5.54E-03
110GO:0090333: regulation of stomatal closure5.54E-03
111GO:0006754: ATP biosynthetic process5.54E-03
112GO:0009637: response to blue light6.04E-03
113GO:0009853: photorespiration6.04E-03
114GO:0009086: methionine biosynthetic process6.21E-03
115GO:0005982: starch metabolic process6.21E-03
116GO:0005975: carbohydrate metabolic process6.26E-03
117GO:0046686: response to cadmium ion6.59E-03
118GO:0006535: cysteine biosynthetic process from serine6.92E-03
119GO:0019684: photosynthesis, light reaction7.65E-03
120GO:0009089: lysine biosynthetic process via diaminopimelate7.65E-03
121GO:0072593: reactive oxygen species metabolic process7.65E-03
122GO:0043085: positive regulation of catalytic activity7.65E-03
123GO:0000272: polysaccharide catabolic process7.65E-03
124GO:0009744: response to sucrose7.79E-03
125GO:0006790: sulfur compound metabolic process8.41E-03
126GO:0016925: protein sumoylation8.41E-03
127GO:0009636: response to toxic substance8.76E-03
128GO:0006807: nitrogen compound metabolic process9.20E-03
129GO:0006108: malate metabolic process9.20E-03
130GO:0006006: glucose metabolic process9.20E-03
131GO:0018107: peptidyl-threonine phosphorylation9.20E-03
132GO:0009725: response to hormone9.20E-03
133GO:0042742: defense response to bacterium9.32E-03
134GO:0009266: response to temperature stimulus1.00E-02
135GO:0006364: rRNA processing1.05E-02
136GO:0009585: red, far-red light phototransduction1.05E-02
137GO:0005985: sucrose metabolic process1.09E-02
138GO:0046854: phosphatidylinositol phosphorylation1.09E-02
139GO:0019762: glucosinolate catabolic process1.17E-02
140GO:0000027: ribosomal large subunit assembly1.26E-02
141GO:0019344: cysteine biosynthetic process1.26E-02
142GO:0061077: chaperone-mediated protein folding1.45E-02
143GO:0010017: red or far-red light signaling pathway1.54E-02
144GO:0016226: iron-sulfur cluster assembly1.54E-02
145GO:0035428: hexose transmembrane transport1.54E-02
146GO:0019748: secondary metabolic process1.54E-02
147GO:0006396: RNA processing1.55E-02
148GO:0009693: ethylene biosynthetic process1.64E-02
149GO:0009306: protein secretion1.74E-02
150GO:0032259: methylation1.76E-02
151GO:0006606: protein import into nucleus1.95E-02
152GO:0009058: biosynthetic process1.99E-02
153GO:0046323: glucose import2.05E-02
154GO:0009646: response to absence of light2.16E-02
155GO:0000302: response to reactive oxygen species2.38E-02
156GO:0007623: circadian rhythm2.60E-02
157GO:0030163: protein catabolic process2.62E-02
158GO:0009567: double fertilization forming a zygote and endosperm2.73E-02
159GO:0006979: response to oxidative stress3.03E-02
160GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.23E-02
161GO:0042128: nitrate assimilation3.35E-02
162GO:0010411: xyloglucan metabolic process3.48E-02
163GO:0006950: response to stress3.48E-02
164GO:0009817: defense response to fungus, incompatible interaction3.75E-02
165GO:0009407: toxin catabolic process4.01E-02
166GO:0042254: ribosome biogenesis4.09E-02
167GO:0009631: cold acclimation4.15E-02
168GO:0007568: aging4.15E-02
169GO:0045087: innate immune response4.43E-02
170GO:0016051: carbohydrate biosynthetic process4.43E-02
171GO:0006099: tricarboxylic acid cycle4.57E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
4GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
5GO:0045550: geranylgeranyl reductase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0008974: phosphoribulokinase activity0.00E+00
10GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0046408: chlorophyll synthetase activity0.00E+00
13GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
16GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
17GO:0019843: rRNA binding1.54E-08
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.70E-06
19GO:0016851: magnesium chelatase activity2.23E-05
20GO:0016168: chlorophyll binding3.50E-05
21GO:0009011: starch synthase activity4.05E-05
22GO:0043495: protein anchor4.05E-05
23GO:0008266: poly(U) RNA binding4.06E-05
24GO:0004332: fructose-bisphosphate aldolase activity9.47E-05
25GO:0016491: oxidoreductase activity1.05E-04
26GO:0019899: enzyme binding1.72E-04
27GO:0051287: NAD binding1.83E-04
28GO:0004325: ferrochelatase activity2.41E-04
29GO:0004853: uroporphyrinogen decarboxylase activity2.41E-04
30GO:0008746: NAD(P)+ transhydrogenase activity2.41E-04
31GO:0035671: enone reductase activity2.41E-04
32GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.41E-04
33GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.41E-04
34GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2.70E-04
35GO:0003735: structural constituent of ribosome3.60E-04
36GO:0018708: thiol S-methyltransferase activity5.34E-04
37GO:0003844: 1,4-alpha-glucan branching enzyme activity5.34E-04
38GO:0016630: protochlorophyllide reductase activity5.34E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity5.34E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity5.34E-04
41GO:0004412: homoserine dehydrogenase activity5.34E-04
42GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.34E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.34E-04
44GO:0000234: phosphoethanolamine N-methyltransferase activity5.34E-04
45GO:0050017: L-3-cyanoalanine synthase activity5.34E-04
46GO:0008883: glutamyl-tRNA reductase activity5.34E-04
47GO:0042389: omega-3 fatty acid desaturase activity5.34E-04
48GO:0010297: heteropolysaccharide binding5.34E-04
49GO:0009977: proton motive force dependent protein transmembrane transporter activity5.34E-04
50GO:0004617: phosphoglycerate dehydrogenase activity5.34E-04
51GO:0004047: aminomethyltransferase activity5.34E-04
52GO:0052832: inositol monophosphate 3-phosphatase activity5.34E-04
53GO:0033201: alpha-1,4-glucan synthase activity5.34E-04
54GO:0004222: metalloendopeptidase activity6.66E-04
55GO:0004565: beta-galactosidase activity6.81E-04
56GO:0031072: heat shock protein binding6.81E-04
57GO:0010277: chlorophyllide a oxygenase [overall] activity8.68E-04
58GO:0043169: cation binding8.68E-04
59GO:0004373: glycogen (starch) synthase activity8.68E-04
60GO:0016992: lipoate synthase activity8.68E-04
61GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.68E-04
62GO:0071917: triose-phosphate transmembrane transporter activity8.68E-04
63GO:0008864: formyltetrahydrofolate deformylase activity8.68E-04
64GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.68E-04
65GO:0019948: SUMO activating enzyme activity8.68E-04
66GO:0050661: NADP binding9.32E-04
67GO:0031409: pigment binding9.50E-04
68GO:0004072: aspartate kinase activity1.24E-03
69GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.24E-03
70GO:0043023: ribosomal large subunit binding1.24E-03
71GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.24E-03
72GO:0004351: glutamate decarboxylase activity1.24E-03
73GO:0022891: substrate-specific transmembrane transporter activity1.51E-03
74GO:0015120: phosphoglycerate transmembrane transporter activity1.65E-03
75GO:0047134: protein-disulfide reductase activity1.77E-03
76GO:0003959: NADPH dehydrogenase activity2.11E-03
77GO:0004791: thioredoxin-disulfide reductase activity2.21E-03
78GO:0004130: cytochrome-c peroxidase activity2.60E-03
79GO:0042578: phosphoric ester hydrolase activity2.60E-03
80GO:0016615: malate dehydrogenase activity2.60E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.89E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.12E-03
83GO:0004849: uridine kinase activity3.12E-03
84GO:0030060: L-malate dehydrogenase activity3.12E-03
85GO:0004124: cysteine synthase activity3.12E-03
86GO:0016597: amino acid binding3.46E-03
87GO:0004033: aldo-keto reductase (NADP) activity4.27E-03
88GO:0071949: FAD binding5.54E-03
89GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.54E-03
90GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.21E-03
91GO:0042802: identical protein binding6.70E-03
92GO:0008047: enzyme activator activity6.92E-03
93GO:0004364: glutathione transferase activity7.48E-03
94GO:0051537: 2 iron, 2 sulfur cluster binding8.43E-03
95GO:0016887: ATPase activity8.51E-03
96GO:0005528: FK506 binding1.26E-02
97GO:0051536: iron-sulfur cluster binding1.26E-02
98GO:0004857: enzyme inhibitor activity1.26E-02
99GO:0004176: ATP-dependent peptidase activity1.45E-02
100GO:0051082: unfolded protein binding1.50E-02
101GO:0015035: protein disulfide oxidoreductase activity1.55E-02
102GO:0003727: single-stranded RNA binding1.74E-02
103GO:0005507: copper ion binding1.78E-02
104GO:0003729: mRNA binding1.85E-02
105GO:0005515: protein binding1.95E-02
106GO:0030170: pyridoxal phosphate binding2.09E-02
107GO:0005355: glucose transmembrane transporter activity2.16E-02
108GO:0050662: coenzyme binding2.16E-02
109GO:0008565: protein transporter activity2.25E-02
110GO:0004872: receptor activity2.27E-02
111GO:0016762: xyloglucan:xyloglucosyl transferase activity2.38E-02
112GO:0008483: transaminase activity2.85E-02
113GO:0008237: metallopeptidase activity2.85E-02
114GO:0016798: hydrolase activity, acting on glycosyl bonds3.48E-02
115GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.61E-02
116GO:0008168: methyltransferase activity3.87E-02
117GO:0003746: translation elongation factor activity4.43E-02
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Gene type



Gene DE type