GO Enrichment Analysis of Co-expressed Genes with
AT4G04630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033206: meiotic cytokinesis | 0.00E+00 |
| 2 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 3 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 4 | GO:1905615: positive regulation of developmental vegetative growth | 0.00E+00 |
| 5 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 6 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 7 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 8 | GO:0010424: DNA methylation on cytosine within a CG sequence | 1.05E-06 |
| 9 | GO:0010102: lateral root morphogenesis | 1.04E-05 |
| 10 | GO:0071249: cellular response to nitrate | 1.71E-05 |
| 11 | GO:2000033: regulation of seed dormancy process | 5.87E-05 |
| 12 | GO:0042255: ribosome assembly | 1.02E-04 |
| 13 | GO:0006353: DNA-templated transcription, termination | 1.02E-04 |
| 14 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.02E-04 |
| 15 | GO:0043971: histone H3-K18 acetylation | 1.46E-04 |
| 16 | GO:0006349: regulation of gene expression by genetic imprinting | 1.88E-04 |
| 17 | GO:0010216: maintenance of DNA methylation | 2.59E-04 |
| 18 | GO:1900033: negative regulation of trichome patterning | 3.33E-04 |
| 19 | GO:0018022: peptidyl-lysine methylation | 3.33E-04 |
| 20 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 3.33E-04 |
| 21 | GO:0090309: positive regulation of methylation-dependent chromatin silencing | 3.33E-04 |
| 22 | GO:2000377: regulation of reactive oxygen species metabolic process | 5.33E-04 |
| 23 | GO:0009863: salicylic acid mediated signaling pathway | 5.33E-04 |
| 24 | GO:0010187: negative regulation of seed germination | 5.33E-04 |
| 25 | GO:0032776: DNA methylation on cytosine | 5.47E-04 |
| 26 | GO:0071705: nitrogen compound transport | 5.47E-04 |
| 27 | GO:0009658: chloroplast organization | 5.94E-04 |
| 28 | GO:0006168: adenine salvage | 7.83E-04 |
| 29 | GO:1902290: positive regulation of defense response to oomycetes | 7.83E-04 |
| 30 | GO:0010116: positive regulation of abscisic acid biosynthetic process | 7.83E-04 |
| 31 | GO:0006166: purine ribonucleoside salvage | 7.83E-04 |
| 32 | GO:0006284: base-excision repair | 8.29E-04 |
| 33 | GO:0006808: regulation of nitrogen utilization | 1.04E-03 |
| 34 | GO:0048629: trichome patterning | 1.04E-03 |
| 35 | GO:1900864: mitochondrial RNA modification | 1.04E-03 |
| 36 | GO:0044209: AMP salvage | 1.31E-03 |
| 37 | GO:0006281: DNA repair | 1.47E-03 |
| 38 | GO:0042176: regulation of protein catabolic process | 1.61E-03 |
| 39 | GO:1901371: regulation of leaf morphogenesis | 1.61E-03 |
| 40 | GO:0035435: phosphate ion transmembrane transport | 1.61E-03 |
| 41 | GO:0042793: transcription from plastid promoter | 1.61E-03 |
| 42 | GO:0010029: regulation of seed germination | 1.92E-03 |
| 43 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.93E-03 |
| 44 | GO:1901001: negative regulation of response to salt stress | 1.93E-03 |
| 45 | GO:0000911: cytokinesis by cell plate formation | 1.93E-03 |
| 46 | GO:0010103: stomatal complex morphogenesis | 2.27E-03 |
| 47 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.27E-03 |
| 48 | GO:0010374: stomatal complex development | 2.27E-03 |
| 49 | GO:0010218: response to far red light | 2.60E-03 |
| 50 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.63E-03 |
| 51 | GO:0009910: negative regulation of flower development | 2.72E-03 |
| 52 | GO:0009867: jasmonic acid mediated signaling pathway | 2.98E-03 |
| 53 | GO:0044030: regulation of DNA methylation | 3.00E-03 |
| 54 | GO:0009880: embryonic pattern specification | 3.00E-03 |
| 55 | GO:0007186: G-protein coupled receptor signaling pathway | 3.00E-03 |
| 56 | GO:0010233: phloem transport | 3.00E-03 |
| 57 | GO:0010052: guard cell differentiation | 3.00E-03 |
| 58 | GO:0030001: metal ion transport | 3.39E-03 |
| 59 | GO:0000373: Group II intron splicing | 3.40E-03 |
| 60 | GO:0009245: lipid A biosynthetic process | 3.40E-03 |
| 61 | GO:0048507: meristem development | 3.40E-03 |
| 62 | GO:0009416: response to light stimulus | 3.52E-03 |
| 63 | GO:1900426: positive regulation of defense response to bacterium | 3.81E-03 |
| 64 | GO:0006355: regulation of transcription, DNA-templated | 4.08E-03 |
| 65 | GO:0048829: root cap development | 4.23E-03 |
| 66 | GO:0010048: vernalization response | 4.23E-03 |
| 67 | GO:0042538: hyperosmotic salinity response | 4.80E-03 |
| 68 | GO:0015706: nitrate transport | 5.13E-03 |
| 69 | GO:0010152: pollen maturation | 5.13E-03 |
| 70 | GO:0010588: cotyledon vascular tissue pattern formation | 5.60E-03 |
| 71 | GO:0010020: chloroplast fission | 6.09E-03 |
| 72 | GO:0006270: DNA replication initiation | 6.09E-03 |
| 73 | GO:0080188: RNA-directed DNA methylation | 6.59E-03 |
| 74 | GO:0010167: response to nitrate | 6.59E-03 |
| 75 | GO:0016569: covalent chromatin modification | 6.89E-03 |
| 76 | GO:0009740: gibberellic acid mediated signaling pathway | 6.89E-03 |
| 77 | GO:0000027: ribosomal large subunit assembly | 7.63E-03 |
| 78 | GO:0080147: root hair cell development | 7.63E-03 |
| 79 | GO:0048364: root development | 7.90E-03 |
| 80 | GO:0006825: copper ion transport | 8.18E-03 |
| 81 | GO:0006874: cellular calcium ion homeostasis | 8.18E-03 |
| 82 | GO:0003333: amino acid transmembrane transport | 8.73E-03 |
| 83 | GO:0009294: DNA mediated transformation | 9.89E-03 |
| 84 | GO:0048443: stamen development | 1.05E-02 |
| 85 | GO:0009790: embryo development | 1.07E-02 |
| 86 | GO:0009734: auxin-activated signaling pathway | 1.16E-02 |
| 87 | GO:0080022: primary root development | 1.17E-02 |
| 88 | GO:0010501: RNA secondary structure unwinding | 1.17E-02 |
| 89 | GO:0010051: xylem and phloem pattern formation | 1.17E-02 |
| 90 | GO:0048653: anther development | 1.17E-02 |
| 91 | GO:0046323: glucose import | 1.24E-02 |
| 92 | GO:0009960: endosperm development | 1.24E-02 |
| 93 | GO:0010305: leaf vascular tissue pattern formation | 1.24E-02 |
| 94 | GO:0007018: microtubule-based movement | 1.30E-02 |
| 95 | GO:0009739: response to gibberellin | 1.42E-02 |
| 96 | GO:0080156: mitochondrial mRNA modification | 1.43E-02 |
| 97 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.43E-02 |
| 98 | GO:0002229: defense response to oomycetes | 1.43E-02 |
| 99 | GO:0032502: developmental process | 1.50E-02 |
| 100 | GO:0008380: RNA splicing | 1.52E-02 |
| 101 | GO:0010090: trichome morphogenesis | 1.57E-02 |
| 102 | GO:0016567: protein ubiquitination | 1.83E-02 |
| 103 | GO:0009651: response to salt stress | 2.16E-02 |
| 104 | GO:0048481: plant ovule development | 2.25E-02 |
| 105 | GO:0009723: response to ethylene | 2.28E-02 |
| 106 | GO:0006811: ion transport | 2.41E-02 |
| 107 | GO:0048527: lateral root development | 2.49E-02 |
| 108 | GO:0006865: amino acid transport | 2.58E-02 |
| 109 | GO:0045892: negative regulation of transcription, DNA-templated | 2.97E-02 |
| 110 | GO:0009640: photomorphogenesis | 3.19E-02 |
| 111 | GO:0006351: transcription, DNA-templated | 3.24E-02 |
| 112 | GO:0009965: leaf morphogenesis | 3.47E-02 |
| 113 | GO:0031347: regulation of defense response | 3.65E-02 |
| 114 | GO:0006260: DNA replication | 3.65E-02 |
| 115 | GO:0006397: mRNA processing | 3.75E-02 |
| 116 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.04E-02 |
| 117 | GO:0009733: response to auxin | 4.32E-02 |
| 118 | GO:0048367: shoot system development | 4.54E-02 |
| 119 | GO:0009553: embryo sac development | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.79E-05 |
| 2 | GO:0003727: single-stranded RNA binding | 4.74E-05 |
| 3 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.46E-04 |
| 4 | GO:0004016: adenylate cyclase activity | 1.46E-04 |
| 5 | GO:0000989: transcription factor activity, transcription factor binding | 1.56E-04 |
| 6 | GO:0003697: single-stranded DNA binding | 3.21E-04 |
| 7 | GO:0016805: dipeptidase activity | 5.47E-04 |
| 8 | GO:0010429: methyl-CpNpN binding | 5.47E-04 |
| 9 | GO:0004180: carboxypeptidase activity | 5.47E-04 |
| 10 | GO:0010428: methyl-CpNpG binding | 5.47E-04 |
| 11 | GO:0070181: small ribosomal subunit rRNA binding | 5.47E-04 |
| 12 | GO:0003690: double-stranded DNA binding | 6.80E-04 |
| 13 | GO:0005354: galactose transmembrane transporter activity | 7.83E-04 |
| 14 | GO:0003999: adenine phosphoribosyltransferase activity | 7.83E-04 |
| 15 | GO:0016279: protein-lysine N-methyltransferase activity | 1.04E-03 |
| 16 | GO:0010011: auxin binding | 1.04E-03 |
| 17 | GO:0010385: double-stranded methylated DNA binding | 1.04E-03 |
| 18 | GO:0004930: G-protein coupled receptor activity | 1.04E-03 |
| 19 | GO:0003688: DNA replication origin binding | 1.61E-03 |
| 20 | GO:0031177: phosphopantetheine binding | 1.61E-03 |
| 21 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 1.93E-03 |
| 22 | GO:0000035: acyl binding | 1.93E-03 |
| 23 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.63E-03 |
| 24 | GO:0004713: protein tyrosine kinase activity | 4.23E-03 |
| 25 | GO:0008327: methyl-CpG binding | 4.67E-03 |
| 26 | GO:0015114: phosphate ion transmembrane transporter activity | 5.60E-03 |
| 27 | GO:0004970: ionotropic glutamate receptor activity | 6.59E-03 |
| 28 | GO:0005217: intracellular ligand-gated ion channel activity | 6.59E-03 |
| 29 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 7.48E-03 |
| 30 | GO:0019843: rRNA binding | 9.17E-03 |
| 31 | GO:0018024: histone-lysine N-methyltransferase activity | 1.11E-02 |
| 32 | GO:0004402: histone acetyltransferase activity | 1.17E-02 |
| 33 | GO:0008080: N-acetyltransferase activity | 1.24E-02 |
| 34 | GO:0001085: RNA polymerase II transcription factor binding | 1.24E-02 |
| 35 | GO:0005355: glucose transmembrane transporter activity | 1.30E-02 |
| 36 | GO:0019901: protein kinase binding | 1.37E-02 |
| 37 | GO:0003723: RNA binding | 1.41E-02 |
| 38 | GO:0048038: quinone binding | 1.43E-02 |
| 39 | GO:0004197: cysteine-type endopeptidase activity | 1.50E-02 |
| 40 | GO:0004518: nuclease activity | 1.50E-02 |
| 41 | GO:0004674: protein serine/threonine kinase activity | 1.51E-02 |
| 42 | GO:0008168: methyltransferase activity | 1.89E-02 |
| 43 | GO:0003682: chromatin binding | 2.08E-02 |
| 44 | GO:0004004: ATP-dependent RNA helicase activity | 2.09E-02 |
| 45 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.41E-02 |
| 46 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.49E-02 |
| 47 | GO:0005516: calmodulin binding | 2.59E-02 |
| 48 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.83E-02 |
| 49 | GO:0042393: histone binding | 2.92E-02 |
| 50 | GO:0003676: nucleic acid binding | 3.04E-02 |
| 51 | GO:0004871: signal transducer activity | 3.06E-02 |
| 52 | GO:0015293: symporter activity | 3.47E-02 |
| 53 | GO:0044212: transcription regulatory region DNA binding | 3.75E-02 |
| 54 | GO:0003777: microtubule motor activity | 4.24E-02 |
| 55 | GO:0015171: amino acid transmembrane transporter activity | 4.24E-02 |
| 56 | GO:0008234: cysteine-type peptidase activity | 4.24E-02 |
| 57 | GO:0003677: DNA binding | 4.60E-02 |
| 58 | GO:0004650: polygalacturonase activity | 4.75E-02 |
| 59 | GO:0016874: ligase activity | 4.85E-02 |