Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097250: mitochondrial respiratory chain supercomplex assembly0.00E+00
2GO:0046865: terpenoid transport0.00E+00
3GO:0002084: protein depalmitoylation0.00E+00
4GO:0034756: regulation of iron ion transport0.00E+00
5GO:0009700: indole phytoalexin biosynthetic process4.45E-05
6GO:0009156: ribonucleoside monophosphate biosynthetic process1.10E-04
7GO:0048569: post-embryonic animal organ development1.10E-04
8GO:0071369: cellular response to ethylene stimulus1.58E-04
9GO:0080168: abscisic acid transport1.89E-04
10GO:0071367: cellular response to brassinosteroid stimulus1.89E-04
11GO:0017006: protein-tetrapyrrole linkage1.89E-04
12GO:0006517: protein deglycosylation1.89E-04
13GO:0015692: lead ion transport1.89E-04
14GO:0010193: response to ozone2.76E-04
15GO:0006516: glycoprotein catabolic process2.78E-04
16GO:0002679: respiratory burst involved in defense response2.78E-04
17GO:0010731: protein glutathionylation2.78E-04
18GO:0006515: misfolded or incompletely synthesized protein catabolic process2.78E-04
19GO:0055089: fatty acid homeostasis2.78E-04
20GO:0009584: detection of visible light2.78E-04
21GO:0010104: regulation of ethylene-activated signaling pathway2.78E-04
22GO:0010188: response to microbial phytotoxin3.73E-04
23GO:0009165: nucleotide biosynthetic process3.73E-04
24GO:0010363: regulation of plant-type hypersensitive response3.73E-04
25GO:0000380: alternative mRNA splicing, via spliceosome4.75E-04
26GO:0009817: defense response to fungus, incompatible interaction5.18E-04
27GO:0000724: double-strand break repair via homologous recombination6.22E-04
28GO:2000014: regulation of endosperm development8.11E-04
29GO:2000070: regulation of response to water deprivation9.32E-04
30GO:0050821: protein stabilization9.32E-04
31GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline9.32E-04
32GO:0001558: regulation of cell growth1.06E-03
33GO:0010120: camalexin biosynthetic process1.06E-03
34GO:0030968: endoplasmic reticulum unfolded protein response1.06E-03
35GO:0010112: regulation of systemic acquired resistance1.19E-03
36GO:0016925: protein sumoylation1.77E-03
37GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.77E-03
38GO:0010039: response to iron ion2.25E-03
39GO:0071732: cellular response to nitric oxide2.25E-03
40GO:0006636: unsaturated fatty acid biosynthetic process2.42E-03
41GO:0006289: nucleotide-excision repair2.60E-03
42GO:0009116: nucleoside metabolic process2.60E-03
43GO:0051302: regulation of cell division2.77E-03
44GO:0006334: nucleosome assembly2.96E-03
45GO:0009617: response to bacterium3.13E-03
46GO:0009814: defense response, incompatible interaction3.14E-03
47GO:0030433: ubiquitin-dependent ERAD pathway3.14E-03
48GO:0010017: red or far-red light signaling pathway3.14E-03
49GO:0009625: response to insect3.33E-03
50GO:0006012: galactose metabolic process3.33E-03
51GO:0071215: cellular response to abscisic acid stimulus3.33E-03
52GO:0042147: retrograde transport, endosome to Golgi3.73E-03
53GO:0009960: endosperm development4.14E-03
54GO:0048544: recognition of pollen4.35E-03
55GO:0006623: protein targeting to vacuole4.56E-03
56GO:0002229: defense response to oomycetes4.77E-03
57GO:0006891: intra-Golgi vesicle-mediated transport4.77E-03
58GO:0042742: defense response to bacterium5.05E-03
59GO:0071281: cellular response to iron ion5.22E-03
60GO:0009816: defense response to bacterium, incompatible interaction6.39E-03
61GO:0009751: response to salicylic acid7.27E-03
62GO:0018298: protein-chromophore linkage7.39E-03
63GO:0009407: toxin catabolic process7.91E-03
64GO:0006631: fatty acid metabolic process9.83E-03
65GO:0051707: response to other organism1.04E-02
66GO:0000209: protein polyubiquitination1.07E-02
67GO:0009636: response to toxic substance1.13E-02
68GO:0006855: drug transmembrane transport1.16E-02
69GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.19E-02
70GO:0006952: defense response1.22E-02
71GO:0009585: red, far-red light phototransduction1.28E-02
72GO:0009909: regulation of flower development1.38E-02
73GO:0009626: plant-type hypersensitive response1.51E-02
74GO:0016310: phosphorylation1.58E-02
75GO:0009058: biosynthetic process2.01E-02
76GO:0006633: fatty acid biosynthetic process2.27E-02
77GO:0007623: circadian rhythm2.43E-02
78GO:0015031: protein transport3.38E-02
79GO:0009723: response to ethylene3.68E-02
80GO:0045892: negative regulation of transcription, DNA-templated4.45E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
3GO:1990381: ubiquitin-specific protease binding4.45E-05
4GO:0004566: beta-glucuronidase activity1.10E-04
5GO:0009883: red or far-red light photoreceptor activity1.10E-04
6GO:0051879: Hsp90 protein binding1.10E-04
7GO:0008020: G-protein coupled photoreceptor activity1.89E-04
8GO:0004749: ribose phosphate diphosphokinase activity2.78E-04
9GO:0009916: alternative oxidase activity3.73E-04
10GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway3.73E-04
11GO:0004888: transmembrane signaling receptor activity4.75E-04
12GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.75E-04
13GO:0031386: protein tag4.75E-04
14GO:0008474: palmitoyl-(protein) hydrolase activity5.82E-04
15GO:0004656: procollagen-proline 4-dioxygenase activity6.94E-04
16GO:0009881: photoreceptor activity8.11E-04
17GO:0004034: aldose 1-epimerase activity9.32E-04
18GO:0004568: chitinase activity1.47E-03
19GO:0008559: xenobiotic-transporting ATPase activity1.61E-03
20GO:0000155: phosphorelay sensor kinase activity1.92E-03
21GO:0003712: transcription cofactor activity2.25E-03
22GO:0004867: serine-type endopeptidase inhibitor activity2.25E-03
23GO:0031418: L-ascorbic acid binding2.60E-03
24GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.33E-03
25GO:0016853: isomerase activity4.35E-03
26GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.71E-03
27GO:0004364: glutathione transferase activity1.01E-02
28GO:0022857: transmembrane transporter activity1.58E-02
29GO:0016740: transferase activity1.60E-02
30GO:0051082: unfolded protein binding1.65E-02
31GO:0015035: protein disulfide oxidoreductase activity1.68E-02
32GO:0030246: carbohydrate binding1.77E-02
33GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.97E-02
34GO:0005506: iron ion binding2.62E-02
35GO:0042802: identical protein binding2.88E-02
36GO:0000287: magnesium ion binding3.27E-02
37GO:0003682: chromatin binding3.45E-02
38GO:0004497: monooxygenase activity3.87E-02
39GO:0052689: carboxylic ester hydrolase activity4.15E-02
40GO:0042803: protein homodimerization activity4.55E-02
41GO:0004871: signal transducer activity4.55E-02
42GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.65E-02
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Gene type



Gene DE type