GO Enrichment Analysis of Co-expressed Genes with
AT4G04040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009606: tropism | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 4 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 5 | GO:0034971: histone H3-R17 methylation | 0.00E+00 |
| 6 | GO:0007026: negative regulation of microtubule depolymerization | 0.00E+00 |
| 7 | GO:0034970: histone H3-R2 methylation | 0.00E+00 |
| 8 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 9 | GO:0034972: histone H3-R26 methylation | 0.00E+00 |
| 10 | GO:0050776: regulation of immune response | 0.00E+00 |
| 11 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 12 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 13 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 14 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 1.35E-06 |
| 15 | GO:2000038: regulation of stomatal complex development | 2.16E-05 |
| 16 | GO:1901259: chloroplast rRNA processing | 7.27E-05 |
| 17 | GO:0006955: immune response | 9.72E-05 |
| 18 | GO:0007389: pattern specification process | 1.56E-04 |
| 19 | GO:0010480: microsporocyte differentiation | 1.67E-04 |
| 20 | GO:0034757: negative regulation of iron ion transport | 1.67E-04 |
| 21 | GO:0043971: histone H3-K18 acetylation | 1.67E-04 |
| 22 | GO:0000373: Group II intron splicing | 1.91E-04 |
| 23 | GO:0048439: flower morphogenesis | 3.78E-04 |
| 24 | GO:1902884: positive regulation of response to oxidative stress | 3.78E-04 |
| 25 | GO:0070981: L-asparagine biosynthetic process | 3.78E-04 |
| 26 | GO:0010271: regulation of chlorophyll catabolic process | 3.78E-04 |
| 27 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.78E-04 |
| 28 | GO:0006529: asparagine biosynthetic process | 3.78E-04 |
| 29 | GO:0009875: pollen-pistil interaction | 3.78E-04 |
| 30 | GO:2000123: positive regulation of stomatal complex development | 3.78E-04 |
| 31 | GO:0010254: nectary development | 3.78E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.78E-04 |
| 33 | GO:0010434: bract formation | 3.78E-04 |
| 34 | GO:0009451: RNA modification | 4.20E-04 |
| 35 | GO:0071705: nitrogen compound transport | 6.19E-04 |
| 36 | GO:0080117: secondary growth | 6.19E-04 |
| 37 | GO:0030029: actin filament-based process | 6.19E-04 |
| 38 | GO:0009954: proximal/distal pattern formation | 6.19E-04 |
| 39 | GO:0009432: SOS response | 6.19E-04 |
| 40 | GO:0016998: cell wall macromolecule catabolic process | 7.70E-04 |
| 41 | GO:0009800: cinnamic acid biosynthetic process | 8.83E-04 |
| 42 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.83E-04 |
| 43 | GO:0000730: DNA recombinase assembly | 8.83E-04 |
| 44 | GO:1902476: chloride transmembrane transport | 8.83E-04 |
| 45 | GO:0051513: regulation of monopolar cell growth | 8.83E-04 |
| 46 | GO:0010239: chloroplast mRNA processing | 8.83E-04 |
| 47 | GO:0009909: regulation of flower development | 9.33E-04 |
| 48 | GO:0009416: response to light stimulus | 1.07E-03 |
| 49 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.15E-03 |
| 50 | GO:0071249: cellular response to nitrate | 1.17E-03 |
| 51 | GO:0009646: response to absence of light | 1.33E-03 |
| 52 | GO:0048497: maintenance of floral organ identity | 1.48E-03 |
| 53 | GO:0016123: xanthophyll biosynthetic process | 1.48E-03 |
| 54 | GO:0032876: negative regulation of DNA endoreduplication | 1.48E-03 |
| 55 | GO:0030308: negative regulation of cell growth | 1.48E-03 |
| 56 | GO:0010375: stomatal complex patterning | 1.48E-03 |
| 57 | GO:0032502: developmental process | 1.62E-03 |
| 58 | GO:0009913: epidermal cell differentiation | 1.83E-03 |
| 59 | GO:0048831: regulation of shoot system development | 1.83E-03 |
| 60 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.83E-03 |
| 61 | GO:0009959: negative gravitropism | 1.83E-03 |
| 62 | GO:0035194: posttranscriptional gene silencing by RNA | 1.83E-03 |
| 63 | GO:0010315: auxin efflux | 1.83E-03 |
| 64 | GO:0010252: auxin homeostasis | 1.83E-03 |
| 65 | GO:0006559: L-phenylalanine catabolic process | 1.83E-03 |
| 66 | GO:0048509: regulation of meristem development | 2.19E-03 |
| 67 | GO:2000037: regulation of stomatal complex patterning | 2.19E-03 |
| 68 | GO:0010067: procambium histogenesis | 2.19E-03 |
| 69 | GO:0006821: chloride transport | 2.58E-03 |
| 70 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.58E-03 |
| 71 | GO:0042148: strand invasion | 2.58E-03 |
| 72 | GO:0048437: floral organ development | 2.58E-03 |
| 73 | GO:0001522: pseudouridine synthesis | 2.99E-03 |
| 74 | GO:0050821: protein stabilization | 2.99E-03 |
| 75 | GO:0030162: regulation of proteolysis | 2.99E-03 |
| 76 | GO:0042255: ribosome assembly | 2.99E-03 |
| 77 | GO:0048766: root hair initiation | 2.99E-03 |
| 78 | GO:0006997: nucleus organization | 3.41E-03 |
| 79 | GO:0044030: regulation of DNA methylation | 3.41E-03 |
| 80 | GO:0010212: response to ionizing radiation | 3.41E-03 |
| 81 | GO:0009657: plastid organization | 3.41E-03 |
| 82 | GO:0006349: regulation of gene expression by genetic imprinting | 4.33E-03 |
| 83 | GO:0016571: histone methylation | 4.33E-03 |
| 84 | GO:0016573: histone acetylation | 4.33E-03 |
| 85 | GO:0031425: chloroplast RNA processing | 4.33E-03 |
| 86 | GO:0009658: chloroplast organization | 4.41E-03 |
| 87 | GO:0009926: auxin polar transport | 4.61E-03 |
| 88 | GO:0030422: production of siRNA involved in RNA interference | 4.81E-03 |
| 89 | GO:0010048: vernalization response | 4.81E-03 |
| 90 | GO:0048229: gametophyte development | 5.32E-03 |
| 91 | GO:0010582: floral meristem determinacy | 5.84E-03 |
| 92 | GO:0015706: nitrate transport | 5.84E-03 |
| 93 | GO:0008361: regulation of cell size | 5.84E-03 |
| 94 | GO:0006312: mitotic recombination | 5.84E-03 |
| 95 | GO:0010075: regulation of meristem growth | 6.38E-03 |
| 96 | GO:0010102: lateral root morphogenesis | 6.38E-03 |
| 97 | GO:0010207: photosystem II assembly | 6.93E-03 |
| 98 | GO:0010223: secondary shoot formation | 6.93E-03 |
| 99 | GO:0009266: response to temperature stimulus | 6.93E-03 |
| 100 | GO:0009934: regulation of meristem structural organization | 6.93E-03 |
| 101 | GO:0006541: glutamine metabolic process | 6.93E-03 |
| 102 | GO:0010020: chloroplast fission | 6.93E-03 |
| 103 | GO:0080188: RNA-directed DNA methylation | 7.50E-03 |
| 104 | GO:0010167: response to nitrate | 7.50E-03 |
| 105 | GO:0006071: glycerol metabolic process | 8.10E-03 |
| 106 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.70E-03 |
| 107 | GO:0006338: chromatin remodeling | 8.70E-03 |
| 108 | GO:0043622: cortical microtubule organization | 9.33E-03 |
| 109 | GO:0006306: DNA methylation | 9.97E-03 |
| 110 | GO:0006397: mRNA processing | 1.00E-02 |
| 111 | GO:0010082: regulation of root meristem growth | 1.13E-02 |
| 112 | GO:0001944: vasculature development | 1.13E-02 |
| 113 | GO:0010227: floral organ abscission | 1.13E-02 |
| 114 | GO:0071215: cellular response to abscisic acid stimulus | 1.13E-02 |
| 115 | GO:0009845: seed germination | 1.20E-02 |
| 116 | GO:0010089: xylem development | 1.20E-02 |
| 117 | GO:0070417: cellular response to cold | 1.27E-02 |
| 118 | GO:0010501: RNA secondary structure unwinding | 1.34E-02 |
| 119 | GO:0010087: phloem or xylem histogenesis | 1.34E-02 |
| 120 | GO:0048653: anther development | 1.34E-02 |
| 121 | GO:0042631: cellular response to water deprivation | 1.34E-02 |
| 122 | GO:0009958: positive gravitropism | 1.41E-02 |
| 123 | GO:0009741: response to brassinosteroid | 1.41E-02 |
| 124 | GO:0009960: endosperm development | 1.41E-02 |
| 125 | GO:0007018: microtubule-based movement | 1.49E-02 |
| 126 | GO:0006814: sodium ion transport | 1.49E-02 |
| 127 | GO:0048825: cotyledon development | 1.56E-02 |
| 128 | GO:0010183: pollen tube guidance | 1.56E-02 |
| 129 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.61E-02 |
| 130 | GO:0080156: mitochondrial mRNA modification | 1.64E-02 |
| 131 | GO:0031047: gene silencing by RNA | 1.72E-02 |
| 132 | GO:0009630: gravitropism | 1.72E-02 |
| 133 | GO:0010090: trichome morphogenesis | 1.80E-02 |
| 134 | GO:0008380: RNA splicing | 1.83E-02 |
| 135 | GO:0009639: response to red or far red light | 1.88E-02 |
| 136 | GO:0006310: DNA recombination | 1.88E-02 |
| 137 | GO:0007267: cell-cell signaling | 1.96E-02 |
| 138 | GO:0010029: regulation of seed germination | 2.22E-02 |
| 139 | GO:0006974: cellular response to DNA damage stimulus | 2.30E-02 |
| 140 | GO:0016049: cell growth | 2.48E-02 |
| 141 | GO:0016567: protein ubiquitination | 2.53E-02 |
| 142 | GO:0006970: response to osmotic stress | 2.56E-02 |
| 143 | GO:0055085: transmembrane transport | 2.66E-02 |
| 144 | GO:0009832: plant-type cell wall biogenesis | 2.67E-02 |
| 145 | GO:0048767: root hair elongation | 2.67E-02 |
| 146 | GO:0000160: phosphorelay signal transduction system | 2.67E-02 |
| 147 | GO:0009407: toxin catabolic process | 2.76E-02 |
| 148 | GO:0009910: negative regulation of flower development | 2.85E-02 |
| 149 | GO:0030001: metal ion transport | 3.34E-02 |
| 150 | GO:0045892: negative regulation of transcription, DNA-templated | 3.58E-02 |
| 151 | GO:0008283: cell proliferation | 3.65E-02 |
| 152 | GO:0009636: response to toxic substance | 3.96E-02 |
| 153 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.18E-02 |
| 154 | GO:0042538: hyperosmotic salinity response | 4.29E-02 |
| 155 | GO:0009736: cytokinin-activated signaling pathway | 4.51E-02 |
| 156 | GO:0048364: root development | 4.52E-02 |
| 157 | GO:0006857: oligopeptide transport | 4.73E-02 |
| 158 | GO:0006468: protein phosphorylation | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 1.35E-06 |
| 3 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 1.35E-06 |
| 4 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 1.35E-06 |
| 5 | GO:0008469: histone-arginine N-methyltransferase activity | 5.01E-06 |
| 6 | GO:0051010: microtubule plus-end binding | 1.67E-04 |
| 7 | GO:0004016: adenylate cyclase activity | 1.67E-04 |
| 8 | GO:0004071: aspartate-ammonia ligase activity | 1.67E-04 |
| 9 | GO:0009672: auxin:proton symporter activity | 2.29E-04 |
| 10 | GO:0009884: cytokinin receptor activity | 3.78E-04 |
| 11 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 3.78E-04 |
| 12 | GO:0009982: pseudouridine synthase activity | 4.10E-04 |
| 13 | GO:0010329: auxin efflux transmembrane transporter activity | 4.10E-04 |
| 14 | GO:0032549: ribonucleoside binding | 6.19E-04 |
| 15 | GO:0005034: osmosensor activity | 6.19E-04 |
| 16 | GO:0070180: large ribosomal subunit rRNA binding | 6.19E-04 |
| 17 | GO:0045548: phenylalanine ammonia-lyase activity | 6.19E-04 |
| 18 | GO:0008508: bile acid:sodium symporter activity | 8.83E-04 |
| 19 | GO:0003777: microtubule motor activity | 9.33E-04 |
| 20 | GO:0003727: single-stranded RNA binding | 9.89E-04 |
| 21 | GO:0005253: anion channel activity | 1.17E-03 |
| 22 | GO:0010385: double-stranded methylated DNA binding | 1.17E-03 |
| 23 | GO:0005247: voltage-gated chloride channel activity | 1.83E-03 |
| 24 | GO:0019900: kinase binding | 2.19E-03 |
| 25 | GO:0004519: endonuclease activity | 2.23E-03 |
| 26 | GO:0000150: recombinase activity | 2.58E-03 |
| 27 | GO:0004520: endodeoxyribonuclease activity | 2.99E-03 |
| 28 | GO:0000400: four-way junction DNA binding | 2.99E-03 |
| 29 | GO:0003697: single-stranded DNA binding | 3.58E-03 |
| 30 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.86E-03 |
| 31 | GO:0008168: methyltransferase activity | 4.20E-03 |
| 32 | GO:0005215: transporter activity | 4.41E-03 |
| 33 | GO:0004673: protein histidine kinase activity | 4.81E-03 |
| 34 | GO:0001054: RNA polymerase I activity | 5.32E-03 |
| 35 | GO:0008559: xenobiotic-transporting ATPase activity | 5.32E-03 |
| 36 | GO:0000155: phosphorelay sensor kinase activity | 6.38E-03 |
| 37 | GO:0003690: double-stranded DNA binding | 6.43E-03 |
| 38 | GO:0031625: ubiquitin protein ligase binding | 6.87E-03 |
| 39 | GO:0042803: protein homodimerization activity | 7.73E-03 |
| 40 | GO:0004871: signal transducer activity | 7.73E-03 |
| 41 | GO:0003723: RNA binding | 8.27E-03 |
| 42 | GO:0043424: protein histidine kinase binding | 9.33E-03 |
| 43 | GO:0008094: DNA-dependent ATPase activity | 9.97E-03 |
| 44 | GO:0004176: ATP-dependent peptidase activity | 9.97E-03 |
| 45 | GO:0033612: receptor serine/threonine kinase binding | 9.97E-03 |
| 46 | GO:0019843: rRNA binding | 1.11E-02 |
| 47 | GO:0018024: histone-lysine N-methyltransferase activity | 1.27E-02 |
| 48 | GO:0004402: histone acetyltransferase activity | 1.34E-02 |
| 49 | GO:0019901: protein kinase binding | 1.56E-02 |
| 50 | GO:0016887: ATPase activity | 1.66E-02 |
| 51 | GO:0016759: cellulose synthase activity | 1.88E-02 |
| 52 | GO:0008237: metallopeptidase activity | 1.96E-02 |
| 53 | GO:0005200: structural constituent of cytoskeleton | 1.96E-02 |
| 54 | GO:0004674: protein serine/threonine kinase activity | 2.17E-02 |
| 55 | GO:0008375: acetylglucosaminyltransferase activity | 2.30E-02 |
| 56 | GO:0046982: protein heterodimerization activity | 2.33E-02 |
| 57 | GO:0004004: ATP-dependent RNA helicase activity | 2.39E-02 |
| 58 | GO:0005096: GTPase activator activity | 2.67E-02 |
| 59 | GO:0004222: metalloendopeptidase activity | 2.76E-02 |
| 60 | GO:0005524: ATP binding | 2.89E-02 |
| 61 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.34E-02 |
| 62 | GO:0042393: histone binding | 3.34E-02 |
| 63 | GO:0004364: glutathione transferase activity | 3.55E-02 |
| 64 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.51E-02 |