Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G03210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.33E-05
6GO:0006468: protein phosphorylation1.40E-04
7GO:0048437: floral organ development1.88E-04
8GO:0010063: positive regulation of trichoblast fate specification2.55E-04
9GO:0010480: microsporocyte differentiation2.55E-04
10GO:0042759: long-chain fatty acid biosynthetic process2.55E-04
11GO:0034971: histone H3-R17 methylation2.55E-04
12GO:0006436: tryptophanyl-tRNA aminoacylation2.55E-04
13GO:0034757: negative regulation of iron ion transport2.55E-04
14GO:0034970: histone H3-R2 methylation2.55E-04
15GO:0034972: histone H3-R26 methylation2.55E-04
16GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic2.55E-04
17GO:0070509: calcium ion import2.55E-04
18GO:0009657: plastid organization2.94E-04
19GO:0000902: cell morphogenesis3.55E-04
20GO:0010434: bract formation5.64E-04
21GO:0010271: regulation of chlorophyll catabolic process5.64E-04
22GO:0048439: flower morphogenesis5.64E-04
23GO:0009662: etioplast organization5.64E-04
24GO:1904143: positive regulation of carotenoid biosynthetic process5.64E-04
25GO:0009786: regulation of asymmetric cell division5.64E-04
26GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine5.64E-04
27GO:2000123: positive regulation of stomatal complex development5.64E-04
28GO:0010254: nectary development5.64E-04
29GO:1902326: positive regulation of chlorophyll biosynthetic process5.64E-04
30GO:0048229: gametophyte development5.68E-04
31GO:0048481: plant ovule development6.53E-04
32GO:0000160: phosphorelay signal transduction system6.95E-04
33GO:0042780: tRNA 3'-end processing9.15E-04
34GO:0001578: microtubule bundle formation9.15E-04
35GO:0009954: proximal/distal pattern formation9.15E-04
36GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic9.15E-04
37GO:0045910: negative regulation of DNA recombination9.15E-04
38GO:0080117: secondary growth9.15E-04
39GO:0070588: calcium ion transmembrane transport9.26E-04
40GO:0009451: RNA modification1.06E-03
41GO:0009944: polarity specification of adaxial/abaxial axis1.14E-03
42GO:0007166: cell surface receptor signaling pathway1.25E-03
43GO:0006418: tRNA aminoacylation for protein translation1.25E-03
44GO:0031048: chromatin silencing by small RNA1.31E-03
45GO:0046739: transport of virus in multicellular host1.31E-03
46GO:2000904: regulation of starch metabolic process1.31E-03
47GO:0009558: embryo sac cellularization1.31E-03
48GO:1902476: chloride transmembrane transport1.31E-03
49GO:0010071: root meristem specification1.31E-03
50GO:0051513: regulation of monopolar cell growth1.31E-03
51GO:0007231: osmosensory signaling pathway1.31E-03
52GO:0010239: chloroplast mRNA processing1.31E-03
53GO:0044211: CTP salvage1.31E-03
54GO:0019048: modulation by virus of host morphology or physiology1.31E-03
55GO:0051567: histone H3-K9 methylation1.75E-03
56GO:0009736: cytokinin-activated signaling pathway1.75E-03
57GO:0044206: UMP salvage1.75E-03
58GO:0006479: protein methylation1.75E-03
59GO:0051322: anaphase1.75E-03
60GO:0033500: carbohydrate homeostasis1.75E-03
61GO:2000038: regulation of stomatal complex development1.75E-03
62GO:0009658: chloroplast organization1.98E-03
63GO:0009909: regulation of flower development1.99E-03
64GO:0006544: glycine metabolic process2.23E-03
65GO:0048497: maintenance of floral organ identity2.23E-03
66GO:1902183: regulation of shoot apical meristem development2.23E-03
67GO:0010375: stomatal complex patterning2.23E-03
68GO:0009553: embryo sac development2.64E-03
69GO:0006206: pyrimidine nucleobase metabolic process2.75E-03
70GO:0018258: protein O-linked glycosylation via hydroxyproline2.75E-03
71GO:0009228: thiamine biosynthetic process2.75E-03
72GO:0016458: gene silencing2.75E-03
73GO:0006563: L-serine metabolic process2.75E-03
74GO:0010405: arabinogalactan protein metabolic process2.75E-03
75GO:0016554: cytidine to uridine editing2.75E-03
76GO:0009913: epidermal cell differentiation2.75E-03
77GO:0006655: phosphatidylglycerol biosynthetic process2.75E-03
78GO:0042793: transcription from plastid promoter2.75E-03
79GO:0048831: regulation of shoot system development2.75E-03
80GO:0032502: developmental process2.94E-03
81GO:0010583: response to cyclopentenone2.94E-03
82GO:0009082: branched-chain amino acid biosynthetic process3.30E-03
83GO:0009942: longitudinal axis specification3.30E-03
84GO:1901259: chloroplast rRNA processing3.30E-03
85GO:0048509: regulation of meristem development3.30E-03
86GO:0009099: valine biosynthetic process3.30E-03
87GO:0030488: tRNA methylation3.30E-03
88GO:0009955: adaxial/abaxial pattern specification3.30E-03
89GO:0051607: defense response to virus3.75E-03
90GO:0000910: cytokinesis3.75E-03
91GO:0010444: guard mother cell differentiation3.89E-03
92GO:0010103: stomatal complex morphogenesis3.89E-03
93GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.89E-03
94GO:0006955: immune response3.89E-03
95GO:0048528: post-embryonic root development3.89E-03
96GO:0006821: chloride transport3.89E-03
97GO:0009790: embryo development4.44E-03
98GO:0030162: regulation of proteolysis4.52E-03
99GO:0001522: pseudouridine synthesis4.52E-03
100GO:0010052: guard cell differentiation5.18E-03
101GO:0010497: plasmodesmata-mediated intercellular transport5.18E-03
102GO:0009097: isoleucine biosynthetic process5.18E-03
103GO:0007389: pattern specification process5.18E-03
104GO:0040008: regulation of growth5.18E-03
105GO:0009827: plant-type cell wall modification5.18E-03
106GO:0048364: root development5.30E-03
107GO:2000024: regulation of leaf development5.86E-03
108GO:0000373: Group II intron splicing5.86E-03
109GO:0009051: pentose-phosphate shunt, oxidative branch5.86E-03
110GO:0009793: embryo development ending in seed dormancy5.92E-03
111GO:0009739: response to gibberellin6.33E-03
112GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.58E-03
113GO:0031425: chloroplast RNA processing6.58E-03
114GO:0009638: phototropism6.58E-03
115GO:0035999: tetrahydrofolate interconversion6.58E-03
116GO:0042761: very long-chain fatty acid biosynthetic process6.58E-03
117GO:1900865: chloroplast RNA modification6.58E-03
118GO:0009688: abscisic acid biosynthetic process7.33E-03
119GO:0030422: production of siRNA involved in RNA interference7.33E-03
120GO:0048829: root cap development7.33E-03
121GO:0009641: shade avoidance7.33E-03
122GO:0006298: mismatch repair7.33E-03
123GO:0006949: syncytium formation7.33E-03
124GO:0006259: DNA metabolic process7.33E-03
125GO:0006816: calcium ion transport8.11E-03
126GO:0006265: DNA topological change8.11E-03
127GO:0009089: lysine biosynthetic process via diaminopimelate8.11E-03
128GO:0016024: CDP-diacylglycerol biosynthetic process8.92E-03
129GO:0045037: protein import into chloroplast stroma8.92E-03
130GO:0010582: floral meristem determinacy8.92E-03
131GO:0009785: blue light signaling pathway9.75E-03
132GO:0006006: glucose metabolic process9.75E-03
133GO:0050826: response to freezing9.75E-03
134GO:0010075: regulation of meristem growth9.75E-03
135GO:0009767: photosynthetic electron transport chain9.75E-03
136GO:0009934: regulation of meristem structural organization1.06E-02
137GO:0010207: photosystem II assembly1.06E-02
138GO:0080188: RNA-directed DNA methylation1.15E-02
139GO:0006071: glycerol metabolic process1.24E-02
140GO:0010025: wax biosynthetic process1.24E-02
141GO:0080167: response to karrikin1.26E-02
142GO:0048316: seed development1.40E-02
143GO:0048367: shoot system development1.40E-02
144GO:0006825: copper ion transport1.43E-02
145GO:0016998: cell wall macromolecule catabolic process1.53E-02
146GO:0006306: DNA methylation1.53E-02
147GO:0009742: brassinosteroid mediated signaling pathway1.73E-02
148GO:0010082: regulation of root meristem growth1.74E-02
149GO:0010227: floral organ abscission1.74E-02
150GO:0071215: cellular response to abscisic acid stimulus1.74E-02
151GO:0006284: base-excision repair1.85E-02
152GO:0042127: regulation of cell proliferation1.85E-02
153GO:0070417: cellular response to cold1.95E-02
154GO:0010087: phloem or xylem histogenesis2.07E-02
155GO:0048653: anther development2.07E-02
156GO:0000226: microtubule cytoskeleton organization2.07E-02
157GO:0009058: biosynthetic process2.16E-02
158GO:0010305: leaf vascular tissue pattern formation2.18E-02
159GO:0006662: glycerol ether metabolic process2.18E-02
160GO:0048868: pollen tube development2.18E-02
161GO:0006342: chromatin silencing2.18E-02
162GO:0009741: response to brassinosteroid2.18E-02
163GO:0007018: microtubule-based movement2.29E-02
164GO:0007059: chromosome segregation2.29E-02
165GO:0009646: response to absence of light2.29E-02
166GO:0048825: cotyledon development2.41E-02
167GO:0008654: phospholipid biosynthetic process2.41E-02
168GO:0009851: auxin biosynthetic process2.41E-02
169GO:0000302: response to reactive oxygen species2.53E-02
170GO:0006355: regulation of transcription, DNA-templated2.73E-02
171GO:0010252: auxin homeostasis2.90E-02
172GO:0009828: plant-type cell wall loosening2.90E-02
173GO:0009567: double fertilization forming a zygote and endosperm2.90E-02
174GO:0007267: cell-cell signaling3.03E-02
175GO:0071805: potassium ion transmembrane transport3.03E-02
176GO:0009734: auxin-activated signaling pathway3.17E-02
177GO:0001666: response to hypoxia3.29E-02
178GO:0010029: regulation of seed germination3.42E-02
179GO:0009816: defense response to bacterium, incompatible interaction3.42E-02
180GO:0006351: transcription, DNA-templated3.43E-02
181GO:0006974: cellular response to DNA damage stimulus3.56E-02
182GO:0010411: xyloglucan metabolic process3.70E-02
183GO:0030154: cell differentiation3.83E-02
184GO:0010311: lateral root formation4.12E-02
185GO:0009555: pollen development4.21E-02
186GO:0009416: response to light stimulus4.21E-02
187GO:0010119: regulation of stomatal movement4.41E-02
188GO:0006865: amino acid transport4.55E-02
189GO:0034599: cellular response to oxidative stress4.85E-02
RankGO TermAdjusted P value
1GO:0047661: amino-acid racemase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0004674: protein serine/threonine kinase activity2.36E-04
4GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity2.55E-04
5GO:0004160: dihydroxy-acid dehydratase activity2.55E-04
6GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.55E-04
7GO:0004830: tryptophan-tRNA ligase activity2.55E-04
8GO:0010285: L,L-diaminopimelate aminotransferase activity2.55E-04
9GO:0042834: peptidoglycan binding2.55E-04
10GO:0004008: copper-exporting ATPase activity2.55E-04
11GO:0016274: protein-arginine N-methyltransferase activity2.55E-04
12GO:0004519: endonuclease activity2.96E-04
13GO:0008168: methyltransferase activity3.66E-04
14GO:0015929: hexosaminidase activity5.64E-04
15GO:0004563: beta-N-acetylhexosaminidase activity5.64E-04
16GO:0009884: cytokinin receptor activity5.64E-04
17GO:0035241: protein-arginine omega-N monomethyltransferase activity5.64E-04
18GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity5.64E-04
19GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity5.64E-04
20GO:0005524: ATP binding7.31E-04
21GO:0005262: calcium channel activity7.37E-04
22GO:0032549: ribonucleoside binding9.15E-04
23GO:0005034: osmosensor activity9.15E-04
24GO:0008469: histone-arginine N-methyltransferase activity9.15E-04
25GO:0070330: aromatase activity9.15E-04
26GO:0017150: tRNA dihydrouridine synthase activity9.15E-04
27GO:0042781: 3'-tRNA processing endoribonuclease activity9.15E-04
28GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.20E-04
29GO:0035197: siRNA binding1.31E-03
30GO:0001872: (1->3)-beta-D-glucan binding1.31E-03
31GO:0019199: transmembrane receptor protein kinase activity1.75E-03
32GO:0004031: aldehyde oxidase activity1.75E-03
33GO:0050302: indole-3-acetaldehyde oxidase activity1.75E-03
34GO:0005253: anion channel activity1.75E-03
35GO:0004845: uracil phosphoribosyltransferase activity1.75E-03
36GO:0004345: glucose-6-phosphate dehydrogenase activity1.75E-03
37GO:0016836: hydro-lyase activity1.75E-03
38GO:0004812: aminoacyl-tRNA ligase activity1.92E-03
39GO:0004672: protein kinase activity2.20E-03
40GO:0005275: amine transmembrane transporter activity2.23E-03
41GO:0018685: alkane 1-monooxygenase activity2.23E-03
42GO:0008725: DNA-3-methyladenine glycosylase activity2.23E-03
43GO:0004372: glycine hydroxymethyltransferase activity2.23E-03
44GO:0019901: protein kinase binding2.57E-03
45GO:0005247: voltage-gated chloride channel activity2.75E-03
46GO:0030983: mismatched DNA binding2.75E-03
47GO:0004605: phosphatidate cytidylyltransferase activity2.75E-03
48GO:1990714: hydroxyproline O-galactosyltransferase activity2.75E-03
49GO:0000156: phosphorelay response regulator activity3.13E-03
50GO:0004656: procollagen-proline 4-dioxygenase activity3.30E-03
51GO:0019900: kinase binding3.30E-03
52GO:0008195: phosphatidate phosphatase activity3.30E-03
53GO:0004849: uridine kinase activity3.30E-03
54GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.11E-03
55GO:0005375: copper ion transmembrane transporter activity5.18E-03
56GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.18E-03
57GO:0008017: microtubule binding5.82E-03
58GO:0008889: glycerophosphodiester phosphodiesterase activity5.86E-03
59GO:0009672: auxin:proton symporter activity6.58E-03
60GO:0004673: protein histidine kinase activity7.33E-03
61GO:0004713: protein tyrosine kinase activity7.33E-03
62GO:0051539: 4 iron, 4 sulfur cluster binding7.48E-03
63GO:0001054: RNA polymerase I activity8.11E-03
64GO:0004521: endoribonuclease activity8.92E-03
65GO:0010329: auxin efflux transmembrane transporter activity9.75E-03
66GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.75E-03
67GO:0031072: heat shock protein binding9.75E-03
68GO:0000155: phosphorelay sensor kinase activity9.75E-03
69GO:0009982: pseudouridine synthase activity9.75E-03
70GO:0016301: kinase activity1.09E-02
71GO:0003777: microtubule motor activity1.27E-02
72GO:0031418: L-ascorbic acid binding1.34E-02
73GO:0015079: potassium ion transmembrane transporter activity1.43E-02
74GO:0043424: protein histidine kinase binding1.43E-02
75GO:0005345: purine nucleobase transmembrane transporter activity1.43E-02
76GO:0004176: ATP-dependent peptidase activity1.53E-02
77GO:0033612: receptor serine/threonine kinase binding1.53E-02
78GO:0035251: UDP-glucosyltransferase activity1.53E-02
79GO:0042803: protein homodimerization activity1.68E-02
80GO:0047134: protein-disulfide reductase activity1.95E-02
81GO:0005507: copper ion binding2.02E-02
82GO:0019843: rRNA binding2.05E-02
83GO:0003713: transcription coactivator activity2.18E-02
84GO:0001085: RNA polymerase II transcription factor binding2.18E-02
85GO:0009055: electron carrier activity2.25E-02
86GO:0030170: pyridoxal phosphate binding2.27E-02
87GO:0004252: serine-type endopeptidase activity2.27E-02
88GO:0004791: thioredoxin-disulfide reductase activity2.29E-02
89GO:0016762: xyloglucan:xyloglucosyl transferase activity2.53E-02
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.78E-02
91GO:0003684: damaged DNA binding2.90E-02
92GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.03E-02
93GO:0008237: metallopeptidase activity3.03E-02
94GO:0008483: transaminase activity3.03E-02
95GO:0016722: oxidoreductase activity, oxidizing metal ions3.03E-02
96GO:0016597: amino acid binding3.16E-02
97GO:0005506: iron ion binding3.31E-02
98GO:0016887: ATPase activity3.56E-02
99GO:0042802: identical protein binding3.59E-02
100GO:0030247: polysaccharide binding3.70E-02
101GO:0016798: hydrolase activity, acting on glycosyl bonds3.70E-02
102GO:0008236: serine-type peptidase activity3.83E-02
103GO:0003824: catalytic activity3.87E-02
104GO:0004222: metalloendopeptidase activity4.26E-02
105GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.41E-02
106GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.41E-02
107GO:0016788: hydrolase activity, acting on ester bonds4.44E-02
108GO:0005515: protein binding4.49E-02
109GO:0003682: chromatin binding4.60E-02
110GO:0003746: translation elongation factor activity4.70E-02
111GO:0003993: acid phosphatase activity4.85E-02
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Gene type



Gene DE type