Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G03190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0009606: tropism0.00E+00
4GO:0090322: regulation of superoxide metabolic process0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
7GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
8GO:0080127: fruit septum development0.00E+00
9GO:0044774: mitotic DNA integrity checkpoint0.00E+00
10GO:0046486: glycerolipid metabolic process0.00E+00
11GO:0019988: charged-tRNA amino acid modification0.00E+00
12GO:0090615: mitochondrial mRNA processing0.00E+00
13GO:0000492: box C/D snoRNP assembly0.00E+00
14GO:0042794: rRNA transcription from plastid promoter0.00E+00
15GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
16GO:0000819: sister chromatid segregation0.00E+00
17GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
18GO:0042793: transcription from plastid promoter1.51E-07
19GO:0009658: chloroplast organization1.15E-06
20GO:0010569: regulation of double-strand break repair via homologous recombination1.81E-05
21GO:0006353: DNA-templated transcription, termination5.21E-05
22GO:0006518: peptide metabolic process5.94E-05
23GO:0042127: regulation of cell proliferation1.04E-04
24GO:0010305: leaf vascular tissue pattern formation1.60E-04
25GO:2000038: regulation of stomatal complex development2.12E-04
26GO:0006364: rRNA processing4.34E-04
27GO:0009913: epidermal cell differentiation4.46E-04
28GO:0040008: regulation of growth4.75E-04
29GO:1905039: carboxylic acid transmembrane transport6.48E-04
30GO:1905200: gibberellic acid transmembrane transport6.48E-04
31GO:0080112: seed growth6.48E-04
32GO:1903866: palisade mesophyll development6.48E-04
33GO:0010063: positive regulation of trichoblast fate specification6.48E-04
34GO:0090063: positive regulation of microtubule nucleation6.48E-04
35GO:0033206: meiotic cytokinesis6.48E-04
36GO:0034757: negative regulation of iron ion transport6.48E-04
37GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.48E-04
38GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.48E-04
39GO:0006401: RNA catabolic process7.55E-04
40GO:0006955: immune response7.55E-04
41GO:0009734: auxin-activated signaling pathway8.47E-04
42GO:0042255: ribosome assembly9.38E-04
43GO:0007389: pattern specification process1.14E-03
44GO:0008033: tRNA processing1.16E-03
45GO:0000373: Group II intron splicing1.37E-03
46GO:0010271: regulation of chlorophyll catabolic process1.40E-03
47GO:0010541: acropetal auxin transport1.40E-03
48GO:0048731: system development1.40E-03
49GO:0018026: peptidyl-lysine monomethylation1.40E-03
50GO:0006650: glycerophospholipid metabolic process1.40E-03
51GO:0009662: etioplast organization1.40E-03
52GO:1900033: negative regulation of trichome patterning1.40E-03
53GO:2000071: regulation of defense response by callose deposition1.40E-03
54GO:0080009: mRNA methylation1.40E-03
55GO:2000123: positive regulation of stomatal complex development1.40E-03
56GO:1901529: positive regulation of anion channel activity1.40E-03
57GO:0033566: gamma-tubulin complex localization1.40E-03
58GO:0009967: positive regulation of signal transduction1.40E-03
59GO:1900865: chloroplast RNA modification1.62E-03
60GO:0080156: mitochondrial mRNA modification1.67E-03
61GO:0048829: root cap development1.89E-03
62GO:0006949: syncytium formation1.89E-03
63GO:0009828: plant-type cell wall loosening2.14E-03
64GO:0046168: glycerol-3-phosphate catabolic process2.30E-03
65GO:0090391: granum assembly2.30E-03
66GO:0042780: tRNA 3'-end processing2.30E-03
67GO:0001578: microtubule bundle formation2.30E-03
68GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.30E-03
69GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.30E-03
70GO:0080117: secondary growth2.30E-03
71GO:0045037: protein import into chloroplast stroma2.51E-03
72GO:0010588: cotyledon vascular tissue pattern formation2.86E-03
73GO:0048367: shoot system development2.94E-03
74GO:0010020: chloroplast fission3.23E-03
75GO:0010540: basipetal auxin transport3.23E-03
76GO:1902290: positive regulation of defense response to oomycetes3.35E-03
77GO:0045017: glycerolipid biosynthetic process3.35E-03
78GO:0010371: regulation of gibberellin biosynthetic process3.35E-03
79GO:0010071: root meristem specification3.35E-03
80GO:0009102: biotin biosynthetic process3.35E-03
81GO:0010239: chloroplast mRNA processing3.35E-03
82GO:0007276: gamete generation3.35E-03
83GO:0010306: rhamnogalacturonan II biosynthetic process3.35E-03
84GO:0043481: anthocyanin accumulation in tissues in response to UV light3.35E-03
85GO:0006072: glycerol-3-phosphate metabolic process3.35E-03
86GO:0080188: RNA-directed DNA methylation3.62E-03
87GO:0009416: response to light stimulus4.43E-03
88GO:2000377: regulation of reactive oxygen species metabolic process4.49E-03
89GO:0006221: pyrimidine nucleotide biosynthetic process4.52E-03
90GO:0009956: radial pattern formation4.52E-03
91GO:0006808: regulation of nitrogen utilization4.52E-03
92GO:0006479: protein methylation4.52E-03
93GO:0048629: trichome patterning4.52E-03
94GO:1900864: mitochondrial RNA modification4.52E-03
95GO:0051322: anaphase4.52E-03
96GO:0009793: embryo development ending in seed dormancy4.78E-03
97GO:0003333: amino acid transmembrane transport5.46E-03
98GO:0016998: cell wall macromolecule catabolic process5.46E-03
99GO:0016558: protein import into peroxisome matrix5.80E-03
100GO:0016120: carotene biosynthetic process5.80E-03
101GO:0048497: maintenance of floral organ identity5.80E-03
102GO:0016123: xanthophyll biosynthetic process5.80E-03
103GO:0032876: negative regulation of DNA endoreduplication5.80E-03
104GO:0030308: negative regulation of cell growth5.80E-03
105GO:0010375: stomatal complex patterning5.80E-03
106GO:0080110: sporopollenin biosynthetic process5.80E-03
107GO:0016131: brassinosteroid metabolic process5.80E-03
108GO:2000022: regulation of jasmonic acid mediated signaling pathway5.98E-03
109GO:0030001: metal ion transport6.05E-03
110GO:0071215: cellular response to abscisic acid stimulus6.53E-03
111GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.53E-03
112GO:0006351: transcription, DNA-templated6.62E-03
113GO:0048831: regulation of shoot system development7.20E-03
114GO:0010315: auxin efflux7.20E-03
115GO:0003006: developmental process involved in reproduction7.20E-03
116GO:0009643: photosynthetic acclimation7.20E-03
117GO:0009959: negative gravitropism7.20E-03
118GO:0060918: auxin transport7.20E-03
119GO:0016554: cytidine to uridine editing7.20E-03
120GO:1902456: regulation of stomatal opening7.20E-03
121GO:0010087: phloem or xylem histogenesis8.35E-03
122GO:0010118: stomatal movement8.35E-03
123GO:0010067: procambium histogenesis8.71E-03
124GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.71E-03
125GO:0009942: longitudinal axis specification8.71E-03
126GO:0048509: regulation of meristem development8.71E-03
127GO:2000033: regulation of seed dormancy process8.71E-03
128GO:2000037: regulation of stomatal complex patterning8.71E-03
129GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.71E-03
130GO:0010310: regulation of hydrogen peroxide metabolic process8.71E-03
131GO:0009955: adaxial/abaxial pattern specification8.71E-03
132GO:0009451: RNA modification8.90E-03
133GO:0009741: response to brassinosteroid9.00E-03
134GO:0031347: regulation of defense response9.06E-03
135GO:0009664: plant-type cell wall organization9.48E-03
136GO:0045892: negative regulation of transcription, DNA-templated9.59E-03
137GO:0010444: guard mother cell differentiation1.03E-02
138GO:0000082: G1/S transition of mitotic cell cycle1.03E-02
139GO:0010103: stomatal complex morphogenesis1.03E-02
140GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.03E-02
141GO:0000712: resolution of meiotic recombination intermediates1.03E-02
142GO:0010374: stomatal complex development1.03E-02
143GO:1900056: negative regulation of leaf senescence1.03E-02
144GO:0010098: suspensor development1.03E-02
145GO:0048437: floral organ development1.03E-02
146GO:0048825: cotyledon development1.04E-02
147GO:0032502: developmental process1.19E-02
148GO:0010583: response to cyclopentenone1.19E-02
149GO:0009787: regulation of abscisic acid-activated signaling pathway1.20E-02
150GO:0009642: response to light intensity1.20E-02
151GO:0046620: regulation of organ growth1.20E-02
152GO:0048766: root hair initiation1.20E-02
153GO:0010492: maintenance of shoot apical meristem identity1.20E-02
154GO:0052543: callose deposition in cell wall1.20E-02
155GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.20E-02
156GO:0006402: mRNA catabolic process1.20E-02
157GO:0032259: methylation1.25E-02
158GO:0007186: G-protein coupled receptor signaling pathway1.38E-02
159GO:0010052: guard cell differentiation1.38E-02
160GO:0001510: RNA methylation1.38E-02
161GO:0010233: phloem transport1.38E-02
162GO:0010497: plasmodesmata-mediated intercellular transport1.38E-02
163GO:0048574: long-day photoperiodism, flowering1.38E-02
164GO:0032544: plastid translation1.38E-02
165GO:0019430: removal of superoxide radicals1.38E-02
166GO:0009827: plant-type cell wall modification1.38E-02
167GO:0048364: root development1.45E-02
168GO:0006397: mRNA processing1.45E-02
169GO:0051301: cell division1.52E-02
170GO:0048507: meristem development1.57E-02
171GO:0000902: cell morphogenesis1.57E-02
172GO:0010027: thylakoid membrane organization1.62E-02
173GO:0010029: regulation of seed germination1.72E-02
174GO:0051726: regulation of cell cycle1.76E-02
175GO:0031425: chloroplast RNA processing1.77E-02
176GO:1900426: positive regulation of defense response to bacterium1.77E-02
177GO:0042761: very long-chain fatty acid biosynthetic process1.77E-02
178GO:0006349: regulation of gene expression by genetic imprinting1.77E-02
179GO:0006535: cysteine biosynthetic process from serine1.98E-02
180GO:0045036: protein targeting to chloroplast1.98E-02
181GO:0009641: shade avoidance1.98E-02
182GO:0016441: posttranscriptional gene silencing1.98E-02
183GO:0006259: DNA metabolic process1.98E-02
184GO:0010048: vernalization response1.98E-02
185GO:0006468: protein phosphorylation2.01E-02
186GO:0048481: plant ovule development2.12E-02
187GO:0048366: leaf development2.13E-02
188GO:0009682: induced systemic resistance2.20E-02
189GO:0008285: negative regulation of cell proliferation2.20E-02
190GO:1903507: negative regulation of nucleic acid-templated transcription2.20E-02
191GO:0015770: sucrose transport2.20E-02
192GO:0009750: response to fructose2.20E-02
193GO:0048229: gametophyte development2.20E-02
194GO:0048765: root hair cell differentiation2.20E-02
195GO:0046856: phosphatidylinositol dephosphorylation2.20E-02
196GO:0006265: DNA topological change2.20E-02
197GO:0009845: seed germination2.40E-02
198GO:0010582: floral meristem determinacy2.42E-02
199GO:0008361: regulation of cell size2.42E-02
200GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.42E-02
201GO:0006312: mitotic recombination2.42E-02
202GO:0012501: programmed cell death2.42E-02
203GO:0009733: response to auxin2.54E-02
204GO:0006865: amino acid transport2.57E-02
205GO:0009790: embryo development2.64E-02
206GO:0010102: lateral root morphogenesis2.65E-02
207GO:0009691: cytokinin biosynthetic process2.65E-02
208GO:0009867: jasmonic acid mediated signaling pathway2.69E-02
209GO:0009933: meristem structural organization2.89E-02
210GO:0006270: DNA replication initiation2.89E-02
211GO:0010223: secondary shoot formation2.89E-02
212GO:0009887: animal organ morphogenesis2.89E-02
213GO:0048768: root hair cell tip growth2.89E-02
214GO:0048467: gynoecium development2.89E-02
215GO:0009901: anther dehiscence3.13E-02
216GO:0009825: multidimensional cell growth3.13E-02
217GO:0006636: unsaturated fatty acid biosynthetic process3.39E-02
218GO:0006355: regulation of transcription, DNA-templated3.41E-02
219GO:0009926: auxin polar transport3.47E-02
220GO:0009744: response to sucrose3.47E-02
221GO:0080147: root hair cell development3.64E-02
222GO:0009863: salicylic acid mediated signaling pathway3.64E-02
223GO:0010187: negative regulation of seed germination3.64E-02
224GO:0019344: cysteine biosynthetic process3.64E-02
225GO:0009739: response to gibberellin3.73E-02
226GO:0016042: lipid catabolic process3.91E-02
227GO:0010073: meristem maintenance3.91E-02
228GO:0006825: copper ion transport3.91E-02
229GO:0019953: sexual reproduction3.91E-02
230GO:0006874: cellular calcium ion homeostasis3.91E-02
231GO:0008380: RNA splicing4.04E-02
232GO:0007165: signal transduction4.10E-02
233GO:0010431: seed maturation4.18E-02
234GO:0006260: DNA replication4.20E-02
235GO:0030245: cellulose catabolic process4.46E-02
236GO:0009736: cytokinin-activated signaling pathway4.67E-02
237GO:0010082: regulation of root meristem growth4.74E-02
238GO:0001944: vasculature development4.74E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004835: tubulin-tyrosine ligase activity0.00E+00
3GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
4GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
5GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
6GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
7GO:0008859: exoribonuclease II activity0.00E+00
8GO:0042834: peptidoglycan binding0.00E+00
9GO:0071633: dihydroceramidase activity0.00E+00
10GO:0004141: dethiobiotin synthase activity0.00E+00
11GO:0003723: RNA binding4.94E-05
12GO:0004930: G-protein coupled receptor activity2.12E-04
13GO:0008168: methyltransferase activity2.93E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.48E-04
15GO:0016274: protein-arginine N-methyltransferase activity6.48E-04
16GO:0008395: steroid hydroxylase activity6.48E-04
17GO:0052381: tRNA dimethylallyltransferase activity6.48E-04
18GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.48E-04
19GO:0004654: polyribonucleotide nucleotidyltransferase activity6.48E-04
20GO:0004016: adenylate cyclase activity6.48E-04
21GO:1905201: gibberellin transmembrane transporter activity6.48E-04
22GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.48E-04
23GO:0003727: single-stranded RNA binding9.48E-04
24GO:0008173: RNA methyltransferase activity1.14E-03
25GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.40E-03
26GO:0005078: MAP-kinase scaffold activity1.40E-03
27GO:0009884: cytokinin receptor activity1.40E-03
28GO:0042389: omega-3 fatty acid desaturase activity1.40E-03
29GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.40E-03
30GO:0004519: endonuclease activity1.51E-03
31GO:0042781: 3'-tRNA processing endoribonuclease activity2.30E-03
32GO:0016805: dipeptidase activity2.30E-03
33GO:0005034: osmosensor activity2.30E-03
34GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.30E-03
35GO:0017150: tRNA dihydrouridine synthase activity2.30E-03
36GO:0003725: double-stranded RNA binding2.86E-03
37GO:0000175: 3'-5'-exoribonuclease activity2.86E-03
38GO:0009041: uridylate kinase activity3.35E-03
39GO:0003916: DNA topoisomerase activity3.35E-03
40GO:0001872: (1->3)-beta-D-glucan binding3.35E-03
41GO:0004222: metalloendopeptidase activity4.28E-03
42GO:0016279: protein-lysine N-methyltransferase activity4.52E-03
43GO:0010328: auxin influx transmembrane transporter activity4.52E-03
44GO:0019843: rRNA binding5.25E-03
45GO:0043565: sequence-specific DNA binding5.27E-03
46GO:0008725: DNA-3-methyladenine glycosylase activity5.80E-03
47GO:0004888: transmembrane signaling receptor activity5.80E-03
48GO:0030570: pectate lyase activity6.53E-03
49GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity7.20E-03
50GO:0004784: superoxide dismutase activity7.20E-03
51GO:0009378: four-way junction helicase activity7.20E-03
52GO:0003688: DNA replication origin binding7.20E-03
53GO:0043140: ATP-dependent 3'-5' DNA helicase activity7.20E-03
54GO:0016832: aldehyde-lyase activity8.71E-03
55GO:0019900: kinase binding8.71E-03
56GO:0004124: cysteine synthase activity8.71E-03
57GO:0005515: protein binding8.78E-03
58GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity9.00E-03
59GO:0042803: protein homodimerization activity1.01E-02
60GO:0030515: snoRNA binding1.03E-02
61GO:0019901: protein kinase binding1.04E-02
62GO:0003690: double-stranded DNA binding1.09E-02
63GO:0003677: DNA binding1.30E-02
64GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.38E-02
65GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.38E-02
66GO:0003724: RNA helicase activity1.38E-02
67GO:0003700: transcription factor activity, sequence-specific DNA binding1.49E-02
68GO:0000989: transcription factor activity, transcription factor binding1.57E-02
69GO:0016788: hydrolase activity, acting on ester bonds1.72E-02
70GO:0009672: auxin:proton symporter activity1.77E-02
71GO:0004674: protein serine/threonine kinase activity1.95E-02
72GO:0004673: protein histidine kinase activity1.98E-02
73GO:0008515: sucrose transmembrane transporter activity2.20E-02
74GO:0008289: lipid binding2.36E-02
75GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.42E-02
76GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.55E-02
77GO:0010329: auxin efflux transmembrane transporter activity2.65E-02
78GO:0000155: phosphorelay sensor kinase activity2.65E-02
79GO:0009982: pseudouridine synthase activity2.65E-02
80GO:0052689: carboxylic ester hydrolase activity2.67E-02
81GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.89E-02
82GO:0003712: transcription cofactor activity3.13E-02
83GO:0004970: ionotropic glutamate receptor activity3.13E-02
84GO:0051119: sugar transmembrane transporter activity3.13E-02
85GO:0005217: intracellular ligand-gated ion channel activity3.13E-02
86GO:0004190: aspartic-type endopeptidase activity3.13E-02
87GO:0003714: transcription corepressor activity3.64E-02
88GO:0043621: protein self-association3.75E-02
89GO:0015293: symporter activity3.90E-02
90GO:0015079: potassium ion transmembrane transporter activity3.91E-02
91GO:0043424: protein histidine kinase binding3.91E-02
92GO:0004540: ribonuclease activity4.18E-02
93GO:0008094: DNA-dependent ATPase activity4.18E-02
94GO:0008810: cellulase activity4.74E-02
95GO:0005524: ATP binding4.75E-02
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Gene type



Gene DE type