GO Enrichment Analysis of Co-expressed Genes with
AT4G03070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 2 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 5 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 6 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 7 | GO:0009606: tropism | 0.00E+00 |
| 8 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 9 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 10 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 11 | GO:0042793: transcription from plastid promoter | 3.49E-10 |
| 12 | GO:0046620: regulation of organ growth | 5.48E-09 |
| 13 | GO:0009733: response to auxin | 1.11E-05 |
| 14 | GO:0009734: auxin-activated signaling pathway | 1.62E-05 |
| 15 | GO:0009416: response to light stimulus | 4.00E-05 |
| 16 | GO:0009451: RNA modification | 4.37E-05 |
| 17 | GO:0009926: auxin polar transport | 1.25E-04 |
| 18 | GO:2000038: regulation of stomatal complex development | 1.48E-04 |
| 19 | GO:0046656: folic acid biosynthetic process | 1.48E-04 |
| 20 | GO:0009913: epidermal cell differentiation | 3.19E-04 |
| 21 | GO:0046654: tetrahydrofolate biosynthetic process | 4.25E-04 |
| 22 | GO:0015904: tetracycline transport | 5.20E-04 |
| 23 | GO:0034757: negative regulation of iron ion transport | 5.20E-04 |
| 24 | GO:0042659: regulation of cell fate specification | 5.20E-04 |
| 25 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 5.20E-04 |
| 26 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 5.20E-04 |
| 27 | GO:0090558: plant epidermis development | 5.20E-04 |
| 28 | GO:1903866: palisade mesophyll development | 5.20E-04 |
| 29 | GO:0010063: positive regulation of trichoblast fate specification | 5.20E-04 |
| 30 | GO:0035987: endodermal cell differentiation | 5.20E-04 |
| 31 | GO:0006436: tryptophanyl-tRNA aminoacylation | 5.20E-04 |
| 32 | GO:0009658: chloroplast organization | 6.43E-04 |
| 33 | GO:0000105: histidine biosynthetic process | 6.79E-04 |
| 34 | GO:0007389: pattern specification process | 8.29E-04 |
| 35 | GO:2000123: positive regulation of stomatal complex development | 1.12E-03 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.12E-03 |
| 37 | GO:0010569: regulation of double-strand break repair via homologous recombination | 1.12E-03 |
| 38 | GO:0010271: regulation of chlorophyll catabolic process | 1.12E-03 |
| 39 | GO:0018026: peptidyl-lysine monomethylation | 1.12E-03 |
| 40 | GO:0071497: cellular response to freezing | 1.12E-03 |
| 41 | GO:0009662: etioplast organization | 1.12E-03 |
| 42 | GO:1900033: negative regulation of trichome patterning | 1.12E-03 |
| 43 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.12E-03 |
| 44 | GO:0080009: mRNA methylation | 1.12E-03 |
| 45 | GO:0006535: cysteine biosynthetic process from serine | 1.36E-03 |
| 46 | GO:0010252: auxin homeostasis | 1.39E-03 |
| 47 | GO:0010027: thylakoid membrane organization | 1.75E-03 |
| 48 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.83E-03 |
| 49 | GO:0090708: specification of plant organ axis polarity | 1.83E-03 |
| 50 | GO:0080117: secondary growth | 1.83E-03 |
| 51 | GO:0090391: granum assembly | 1.83E-03 |
| 52 | GO:0006518: peptide metabolic process | 1.83E-03 |
| 53 | GO:0042780: tRNA 3'-end processing | 1.83E-03 |
| 54 | GO:0001578: microtubule bundle formation | 1.83E-03 |
| 55 | GO:0006760: folic acid-containing compound metabolic process | 1.83E-03 |
| 56 | GO:0010588: cotyledon vascular tissue pattern formation | 2.05E-03 |
| 57 | GO:0048481: plant ovule development | 2.46E-03 |
| 58 | GO:1902476: chloride transmembrane transport | 2.66E-03 |
| 59 | GO:0010071: root meristem specification | 2.66E-03 |
| 60 | GO:0010239: chloroplast mRNA processing | 2.66E-03 |
| 61 | GO:0010306: rhamnogalacturonan II biosynthetic process | 2.66E-03 |
| 62 | GO:0046739: transport of virus in multicellular host | 2.66E-03 |
| 63 | GO:0051289: protein homotetramerization | 2.66E-03 |
| 64 | GO:0019344: cysteine biosynthetic process | 3.21E-03 |
| 65 | GO:0051322: anaphase | 3.58E-03 |
| 66 | GO:0006221: pyrimidine nucleotide biosynthetic process | 3.58E-03 |
| 67 | GO:0030104: water homeostasis | 3.58E-03 |
| 68 | GO:0006021: inositol biosynthetic process | 3.58E-03 |
| 69 | GO:0006346: methylation-dependent chromatin silencing | 3.58E-03 |
| 70 | GO:1901141: regulation of lignin biosynthetic process | 3.58E-03 |
| 71 | GO:0006479: protein methylation | 3.58E-03 |
| 72 | GO:0048629: trichome patterning | 3.58E-03 |
| 73 | GO:0032876: negative regulation of DNA endoreduplication | 4.59E-03 |
| 74 | GO:0030308: negative regulation of cell growth | 4.59E-03 |
| 75 | GO:0010375: stomatal complex patterning | 4.59E-03 |
| 76 | GO:0048497: maintenance of floral organ identity | 4.59E-03 |
| 77 | GO:0009107: lipoate biosynthetic process | 4.59E-03 |
| 78 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.66E-03 |
| 79 | GO:0040008: regulation of growth | 4.79E-03 |
| 80 | GO:0016554: cytidine to uridine editing | 5.69E-03 |
| 81 | GO:0006655: phosphatidylglycerol biosynthetic process | 5.69E-03 |
| 82 | GO:0010315: auxin efflux | 5.69E-03 |
| 83 | GO:1902456: regulation of stomatal opening | 5.69E-03 |
| 84 | GO:0048831: regulation of shoot system development | 5.69E-03 |
| 85 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 5.69E-03 |
| 86 | GO:0009643: photosynthetic acclimation | 5.69E-03 |
| 87 | GO:0010405: arabinogalactan protein metabolic process | 5.69E-03 |
| 88 | GO:0010087: phloem or xylem histogenesis | 5.95E-03 |
| 89 | GO:0009741: response to brassinosteroid | 6.41E-03 |
| 90 | GO:0010305: leaf vascular tissue pattern formation | 6.41E-03 |
| 91 | GO:2000037: regulation of stomatal complex patterning | 6.87E-03 |
| 92 | GO:0010310: regulation of hydrogen peroxide metabolic process | 6.87E-03 |
| 93 | GO:2000067: regulation of root morphogenesis | 6.87E-03 |
| 94 | GO:0009955: adaxial/abaxial pattern specification | 6.87E-03 |
| 95 | GO:0010067: procambium histogenesis | 6.87E-03 |
| 96 | GO:1901259: chloroplast rRNA processing | 6.87E-03 |
| 97 | GO:0009942: longitudinal axis specification | 6.87E-03 |
| 98 | GO:0048509: regulation of meristem development | 6.87E-03 |
| 99 | GO:0030488: tRNA methylation | 6.87E-03 |
| 100 | GO:0048825: cotyledon development | 7.41E-03 |
| 101 | GO:0071554: cell wall organization or biogenesis | 7.93E-03 |
| 102 | GO:0007050: cell cycle arrest | 8.14E-03 |
| 103 | GO:0048437: floral organ development | 8.14E-03 |
| 104 | GO:0006821: chloride transport | 8.14E-03 |
| 105 | GO:0015937: coenzyme A biosynthetic process | 8.14E-03 |
| 106 | GO:0009396: folic acid-containing compound biosynthetic process | 8.14E-03 |
| 107 | GO:0010103: stomatal complex morphogenesis | 8.14E-03 |
| 108 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 8.14E-03 |
| 109 | GO:0010583: response to cyclopentenone | 8.48E-03 |
| 110 | GO:0032502: developmental process | 8.48E-03 |
| 111 | GO:0009642: response to light intensity | 9.47E-03 |
| 112 | GO:0001522: pseudouridine synthesis | 9.47E-03 |
| 113 | GO:0042255: ribosome assembly | 9.47E-03 |
| 114 | GO:0006353: DNA-templated transcription, termination | 9.47E-03 |
| 115 | GO:0048766: root hair initiation | 9.47E-03 |
| 116 | GO:0055075: potassium ion homeostasis | 9.47E-03 |
| 117 | GO:0009828: plant-type cell wall loosening | 9.64E-03 |
| 118 | GO:0019430: removal of superoxide radicals | 1.09E-02 |
| 119 | GO:0007186: G-protein coupled receptor signaling pathway | 1.09E-02 |
| 120 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.09E-02 |
| 121 | GO:0032544: plastid translation | 1.09E-02 |
| 122 | GO:0000373: Group II intron splicing | 1.24E-02 |
| 123 | GO:0048589: developmental growth | 1.24E-02 |
| 124 | GO:0000902: cell morphogenesis | 1.24E-02 |
| 125 | GO:1900865: chloroplast RNA modification | 1.39E-02 |
| 126 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.39E-02 |
| 127 | GO:2000280: regulation of root development | 1.39E-02 |
| 128 | GO:0031425: chloroplast RNA processing | 1.39E-02 |
| 129 | GO:0006949: syncytium formation | 1.55E-02 |
| 130 | GO:0006259: DNA metabolic process | 1.55E-02 |
| 131 | GO:0031627: telomeric loop formation | 1.55E-02 |
| 132 | GO:0048829: root cap development | 1.55E-02 |
| 133 | GO:0045036: protein targeting to chloroplast | 1.55E-02 |
| 134 | GO:0000160: phosphorelay signal transduction system | 1.59E-02 |
| 135 | GO:0006811: ion transport | 1.67E-02 |
| 136 | GO:0010015: root morphogenesis | 1.72E-02 |
| 137 | GO:0006265: DNA topological change | 1.72E-02 |
| 138 | GO:0009750: response to fructose | 1.72E-02 |
| 139 | GO:0045892: negative regulation of transcription, DNA-templated | 1.86E-02 |
| 140 | GO:0008361: regulation of cell size | 1.90E-02 |
| 141 | GO:0006790: sulfur compound metabolic process | 1.90E-02 |
| 142 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.90E-02 |
| 143 | GO:0010152: pollen maturation | 1.90E-02 |
| 144 | GO:0045037: protein import into chloroplast stroma | 1.90E-02 |
| 145 | GO:0016567: protein ubiquitination | 2.07E-02 |
| 146 | GO:0009767: photosynthetic electron transport chain | 2.08E-02 |
| 147 | GO:0010102: lateral root morphogenesis | 2.08E-02 |
| 148 | GO:0009691: cytokinin biosynthetic process | 2.08E-02 |
| 149 | GO:0030001: metal ion transport | 2.19E-02 |
| 150 | GO:0010223: secondary shoot formation | 2.27E-02 |
| 151 | GO:0009739: response to gibberellin | 2.45E-02 |
| 152 | GO:0080188: RNA-directed DNA methylation | 2.46E-02 |
| 153 | GO:0090351: seedling development | 2.46E-02 |
| 154 | GO:0046854: phosphatidylinositol phosphorylation | 2.46E-02 |
| 155 | GO:0006071: glycerol metabolic process | 2.66E-02 |
| 156 | GO:0006833: water transport | 2.66E-02 |
| 157 | GO:0080147: root hair cell development | 2.86E-02 |
| 158 | GO:0051302: regulation of cell division | 3.07E-02 |
| 159 | GO:0006418: tRNA aminoacylation for protein translation | 3.07E-02 |
| 160 | GO:0006874: cellular calcium ion homeostasis | 3.07E-02 |
| 161 | GO:0010073: meristem maintenance | 3.07E-02 |
| 162 | GO:0006825: copper ion transport | 3.07E-02 |
| 163 | GO:0009664: plant-type cell wall organization | 3.11E-02 |
| 164 | GO:0006306: DNA methylation | 3.28E-02 |
| 165 | GO:0003333: amino acid transmembrane transport | 3.28E-02 |
| 166 | GO:0016998: cell wall macromolecule catabolic process | 3.28E-02 |
| 167 | GO:0006364: rRNA processing | 3.33E-02 |
| 168 | GO:0009736: cytokinin-activated signaling pathway | 3.33E-02 |
| 169 | GO:0009826: unidimensional cell growth | 3.50E-02 |
| 170 | GO:0031348: negative regulation of defense response | 3.50E-02 |
| 171 | GO:0071215: cellular response to abscisic acid stimulus | 3.72E-02 |
| 172 | GO:0010082: regulation of root meristem growth | 3.72E-02 |
| 173 | GO:0001944: vasculature development | 3.72E-02 |
| 174 | GO:0010089: xylem development | 3.95E-02 |
| 175 | GO:0048443: stamen development | 3.95E-02 |
| 176 | GO:0006284: base-excision repair | 3.95E-02 |
| 177 | GO:0042127: regulation of cell proliferation | 3.95E-02 |
| 178 | GO:0048367: shoot system development | 4.07E-02 |
| 179 | GO:0070417: cellular response to cold | 4.18E-02 |
| 180 | GO:0010118: stomatal movement | 4.42E-02 |
| 181 | GO:0042631: cellular response to water deprivation | 4.42E-02 |
| 182 | GO:0000226: microtubule cytoskeleton organization | 4.42E-02 |
| 183 | GO:0080022: primary root development | 4.42E-02 |
| 184 | GO:0008033: tRNA processing | 4.42E-02 |
| 185 | GO:0009740: gibberellic acid mediated signaling pathway | 4.46E-02 |
| 186 | GO:0009958: positive gravitropism | 4.66E-02 |
| 187 | GO:0048868: pollen tube development | 4.66E-02 |
| 188 | GO:0080167: response to karrikin | 4.77E-02 |
| 189 | GO:0007059: chromosome segregation | 4.91E-02 |
| 190 | GO:0009646: response to absence of light | 4.91E-02 |
| 191 | GO:0007018: microtubule-based movement | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 2 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 3 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 4 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 5 | GO:0004519: endonuclease activity | 3.63E-05 |
| 6 | GO:0004930: G-protein coupled receptor activity | 1.48E-04 |
| 7 | GO:0004124: cysteine synthase activity | 4.25E-04 |
| 8 | GO:0004016: adenylate cyclase activity | 5.20E-04 |
| 9 | GO:0004400: histidinol-phosphate transaminase activity | 5.20E-04 |
| 10 | GO:0004632: phosphopantothenate--cysteine ligase activity | 5.20E-04 |
| 11 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 5.20E-04 |
| 12 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 5.20E-04 |
| 13 | GO:0004156: dihydropteroate synthase activity | 5.20E-04 |
| 14 | GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | 5.20E-04 |
| 15 | GO:0016274: protein-arginine N-methyltransferase activity | 5.20E-04 |
| 16 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 5.20E-04 |
| 17 | GO:0052381: tRNA dimethylallyltransferase activity | 5.20E-04 |
| 18 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 5.20E-04 |
| 19 | GO:0004830: tryptophan-tRNA ligase activity | 5.20E-04 |
| 20 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 5.20E-04 |
| 21 | GO:0003723: RNA binding | 7.29E-04 |
| 22 | GO:0016415: octanoyltransferase activity | 1.12E-03 |
| 23 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 1.12E-03 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.12E-03 |
| 25 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.12E-03 |
| 26 | GO:0008805: carbon-monoxide oxygenase activity | 1.12E-03 |
| 27 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.12E-03 |
| 28 | GO:0008493: tetracycline transporter activity | 1.12E-03 |
| 29 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.12E-03 |
| 30 | GO:0015929: hexosaminidase activity | 1.12E-03 |
| 31 | GO:0004563: beta-N-acetylhexosaminidase activity | 1.12E-03 |
| 32 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.12E-03 |
| 33 | GO:0004150: dihydroneopterin aldolase activity | 1.12E-03 |
| 34 | GO:0009884: cytokinin receptor activity | 1.12E-03 |
| 35 | GO:0017118: lipoyltransferase activity | 1.12E-03 |
| 36 | GO:0009672: auxin:proton symporter activity | 1.17E-03 |
| 37 | GO:0017150: tRNA dihydrouridine synthase activity | 1.83E-03 |
| 38 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.83E-03 |
| 39 | GO:0016805: dipeptidase activity | 1.83E-03 |
| 40 | GO:0005034: osmosensor activity | 1.83E-03 |
| 41 | GO:0010329: auxin efflux transmembrane transporter activity | 2.05E-03 |
| 42 | GO:0001872: (1->3)-beta-D-glucan binding | 2.66E-03 |
| 43 | GO:0009041: uridylate kinase activity | 2.66E-03 |
| 44 | GO:0010011: auxin binding | 3.58E-03 |
| 45 | GO:0005253: anion channel activity | 3.58E-03 |
| 46 | GO:0046556: alpha-L-arabinofuranosidase activity | 3.58E-03 |
| 47 | GO:0016279: protein-lysine N-methyltransferase activity | 3.58E-03 |
| 48 | GO:0008725: DNA-3-methyladenine glycosylase activity | 4.59E-03 |
| 49 | GO:0004523: RNA-DNA hybrid ribonuclease activity | 4.59E-03 |
| 50 | GO:0004888: transmembrane signaling receptor activity | 4.59E-03 |
| 51 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 4.59E-03 |
| 52 | GO:0030570: pectate lyase activity | 4.66E-03 |
| 53 | GO:0004871: signal transducer activity | 5.60E-03 |
| 54 | GO:0004605: phosphatidate cytidylyltransferase activity | 5.69E-03 |
| 55 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 5.69E-03 |
| 56 | GO:0004784: superoxide dismutase activity | 5.69E-03 |
| 57 | GO:0005247: voltage-gated chloride channel activity | 5.69E-03 |
| 58 | GO:0008195: phosphatidate phosphatase activity | 6.87E-03 |
| 59 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 6.87E-03 |
| 60 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 6.87E-03 |
| 61 | GO:0016832: aldehyde-lyase activity | 6.87E-03 |
| 62 | GO:0004656: procollagen-proline 4-dioxygenase activity | 6.87E-03 |
| 63 | GO:0019900: kinase binding | 6.87E-03 |
| 64 | GO:0004518: nuclease activity | 8.48E-03 |
| 65 | GO:0016413: O-acetyltransferase activity | 1.09E-02 |
| 66 | GO:0008173: RNA methyltransferase activity | 1.09E-02 |
| 67 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 1.09E-02 |
| 68 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 1.24E-02 |
| 69 | GO:0019843: rRNA binding | 1.41E-02 |
| 70 | GO:0004673: protein histidine kinase activity | 1.55E-02 |
| 71 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.67E-02 |
| 72 | GO:0003691: double-stranded telomeric DNA binding | 1.72E-02 |
| 73 | GO:0008559: xenobiotic-transporting ATPase activity | 1.72E-02 |
| 74 | GO:0009982: pseudouridine synthase activity | 2.08E-02 |
| 75 | GO:0003725: double-stranded RNA binding | 2.08E-02 |
| 76 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.08E-02 |
| 77 | GO:0031072: heat shock protein binding | 2.08E-02 |
| 78 | GO:0000155: phosphorelay sensor kinase activity | 2.08E-02 |
| 79 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.27E-02 |
| 80 | GO:0005217: intracellular ligand-gated ion channel activity | 2.46E-02 |
| 81 | GO:0004970: ionotropic glutamate receptor activity | 2.46E-02 |
| 82 | GO:0031418: L-ascorbic acid binding | 2.86E-02 |
| 83 | GO:0043424: protein histidine kinase binding | 3.07E-02 |
| 84 | GO:0005345: purine nucleobase transmembrane transporter activity | 3.07E-02 |
| 85 | GO:0005215: transporter activity | 3.11E-02 |
| 86 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.20E-02 |
| 87 | GO:0008408: 3'-5' exonuclease activity | 3.28E-02 |
| 88 | GO:0035251: UDP-glucosyltransferase activity | 3.28E-02 |
| 89 | GO:0004707: MAP kinase activity | 3.28E-02 |
| 90 | GO:0003677: DNA binding | 3.72E-02 |
| 91 | GO:0016788: hydrolase activity, acting on ester bonds | 3.76E-02 |
| 92 | GO:0003727: single-stranded RNA binding | 3.95E-02 |
| 93 | GO:0004812: aminoacyl-tRNA ligase activity | 4.18E-02 |
| 94 | GO:0004650: polygalacturonase activity | 4.33E-02 |
| 95 | GO:0001085: RNA polymerase II transcription factor binding | 4.66E-02 |
| 96 | GO:0004527: exonuclease activity | 4.66E-02 |
| 97 | GO:0003713: transcription coactivator activity | 4.66E-02 |