Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G02630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010157: response to chlorate0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:0009249: protein lipoylation0.00E+00
6GO:2000505: regulation of energy homeostasis0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0017038: protein import0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
11GO:0090279: regulation of calcium ion import0.00E+00
12GO:0044249: cellular biosynthetic process0.00E+00
13GO:0031116: positive regulation of microtubule polymerization0.00E+00
14GO:0042820: vitamin B6 catabolic process0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0042817: pyridoxal metabolic process0.00E+00
18GO:0009106: lipoate metabolic process0.00E+00
19GO:0090042: tubulin deacetylation0.00E+00
20GO:0015882: L-ascorbic acid transport0.00E+00
21GO:0018023: peptidyl-lysine trimethylation0.00E+00
22GO:0071474: cellular hyperosmotic response0.00E+00
23GO:0009658: chloroplast organization2.09E-07
24GO:0010027: thylakoid membrane organization2.06E-05
25GO:0009793: embryo development ending in seed dormancy7.13E-05
26GO:0045038: protein import into chloroplast thylakoid membrane2.19E-04
27GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.08E-04
28GO:0010190: cytochrome b6f complex assembly3.08E-04
29GO:0015995: chlorophyll biosynthetic process3.08E-04
30GO:0042371: vitamin K biosynthetic process5.09E-04
31GO:2000021: regulation of ion homeostasis5.09E-04
32GO:1902458: positive regulation of stomatal opening5.09E-04
33GO:0010028: xanthophyll cycle5.09E-04
34GO:0048363: mucilage pectin metabolic process5.09E-04
35GO:0000023: maltose metabolic process5.09E-04
36GO:0006419: alanyl-tRNA aminoacylation5.09E-04
37GO:0000476: maturation of 4.5S rRNA5.09E-04
38GO:0009443: pyridoxal 5'-phosphate salvage5.09E-04
39GO:0000967: rRNA 5'-end processing5.09E-04
40GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.09E-04
41GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.09E-04
42GO:0015671: oxygen transport5.09E-04
43GO:0043266: regulation of potassium ion transport5.09E-04
44GO:0006659: phosphatidylserine biosynthetic process5.09E-04
45GO:0042547: cell wall modification involved in multidimensional cell growth5.09E-04
46GO:0006400: tRNA modification5.29E-04
47GO:0006605: protein targeting6.59E-04
48GO:0071482: cellular response to light stimulus8.02E-04
49GO:0032544: plastid translation8.02E-04
50GO:0010206: photosystem II repair9.59E-04
51GO:0019432: triglyceride biosynthetic process9.59E-04
52GO:0080183: response to photooxidative stress1.10E-03
53GO:0001682: tRNA 5'-leader removal1.10E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.10E-03
55GO:0051262: protein tetramerization1.10E-03
56GO:0034470: ncRNA processing1.10E-03
57GO:0009629: response to gravity1.10E-03
58GO:0010198: synergid death1.10E-03
59GO:0006739: NADP metabolic process1.10E-03
60GO:1900871: chloroplast mRNA modification1.10E-03
61GO:0007154: cell communication1.10E-03
62GO:0018026: peptidyl-lysine monomethylation1.10E-03
63GO:0006423: cysteinyl-tRNA aminoacylation1.10E-03
64GO:0006435: threonyl-tRNA aminoacylation1.10E-03
65GO:0071668: plant-type cell wall assembly1.10E-03
66GO:0009220: pyrimidine ribonucleotide biosynthetic process1.10E-03
67GO:0045036: protein targeting to chloroplast1.32E-03
68GO:0006782: protoporphyrinogen IX biosynthetic process1.32E-03
69GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-03
70GO:0006352: DNA-templated transcription, initiation1.52E-03
71GO:0000910: cytokinesis1.56E-03
72GO:0005983: starch catabolic process1.74E-03
73GO:0045037: protein import into chloroplast stroma1.74E-03
74GO:0045493: xylan catabolic process1.79E-03
75GO:0030261: chromosome condensation1.79E-03
76GO:0090506: axillary shoot meristem initiation1.79E-03
77GO:0000913: preprophase band assembly1.79E-03
78GO:0033591: response to L-ascorbic acid1.79E-03
79GO:0031022: nuclear migration along microfilament1.79E-03
80GO:0034051: negative regulation of plant-type hypersensitive response1.79E-03
81GO:0051604: protein maturation1.79E-03
82GO:0015940: pantothenate biosynthetic process1.79E-03
83GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.79E-03
84GO:0001578: microtubule bundle formation1.79E-03
85GO:0009627: systemic acquired resistance1.93E-03
86GO:2000012: regulation of auxin polar transport1.98E-03
87GO:0010207: photosystem II assembly2.24E-03
88GO:0071732: cellular response to nitric oxide2.51E-03
89GO:0090351: seedling development2.51E-03
90GO:2001141: regulation of RNA biosynthetic process2.60E-03
91GO:0009102: biotin biosynthetic process2.60E-03
92GO:0046653: tetrahydrofolate metabolic process2.60E-03
93GO:0008615: pyridoxine biosynthetic process2.60E-03
94GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.60E-03
95GO:0006164: purine nucleotide biosynthetic process2.60E-03
96GO:0016556: mRNA modification2.60E-03
97GO:0010109: regulation of photosynthesis3.50E-03
98GO:0051322: anaphase3.50E-03
99GO:0022622: root system development3.50E-03
100GO:0006021: inositol biosynthetic process3.50E-03
101GO:0071483: cellular response to blue light3.50E-03
102GO:0006734: NADH metabolic process3.50E-03
103GO:0044205: 'de novo' UMP biosynthetic process3.50E-03
104GO:0007020: microtubule nucleation3.50E-03
105GO:0061077: chaperone-mediated protein folding3.77E-03
106GO:0009790: embryo development3.78E-03
107GO:0006730: one-carbon metabolic process4.13E-03
108GO:0009107: lipoate biosynthetic process4.49E-03
109GO:0016123: xanthophyll biosynthetic process4.49E-03
110GO:0046785: microtubule polymerization4.49E-03
111GO:0009904: chloroplast accumulation movement4.49E-03
112GO:0010236: plastoquinone biosynthetic process4.49E-03
113GO:0071369: cellular response to ethylene stimulus4.51E-03
114GO:0009306: protein secretion4.90E-03
115GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.56E-03
116GO:0042793: transcription from plastid promoter5.56E-03
117GO:0016554: cytidine to uridine editing5.56E-03
118GO:0032973: amino acid export5.56E-03
119GO:0006364: rRNA processing6.46E-03
120GO:0009648: photoperiodism6.71E-03
121GO:0019509: L-methionine salvage from methylthioadenosine6.71E-03
122GO:0042372: phylloquinone biosynthetic process6.71E-03
123GO:0006458: 'de novo' protein folding6.71E-03
124GO:0010067: procambium histogenesis6.71E-03
125GO:0042026: protein refolding6.71E-03
126GO:0034389: lipid particle organization6.71E-03
127GO:0009903: chloroplast avoidance movement6.71E-03
128GO:0030488: tRNA methylation6.71E-03
129GO:0032880: regulation of protein localization7.95E-03
130GO:0048528: post-embryonic root development7.95E-03
131GO:0009772: photosynthetic electron transport in photosystem II7.95E-03
132GO:0043090: amino acid import7.95E-03
133GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.95E-03
134GO:0010196: nonphotochemical quenching7.95E-03
135GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.95E-03
136GO:0016032: viral process8.20E-03
137GO:0006508: proteolysis8.58E-03
138GO:0071281: cellular response to iron ion8.75E-03
139GO:0000105: histidine biosynthetic process9.25E-03
140GO:0048564: photosystem I assembly9.25E-03
141GO:0009704: de-etiolation9.25E-03
142GO:0006353: DNA-templated transcription, termination9.25E-03
143GO:2000070: regulation of response to water deprivation9.25E-03
144GO:0070413: trehalose metabolism in response to stress9.25E-03
145GO:0017004: cytochrome complex assembly1.06E-02
146GO:0009932: cell tip growth1.06E-02
147GO:0022900: electron transport chain1.06E-02
148GO:0006526: arginine biosynthetic process1.06E-02
149GO:0009657: plastid organization1.06E-02
150GO:0015780: nucleotide-sugar transport1.21E-02
151GO:0098656: anion transmembrane transport1.21E-02
152GO:0080144: amino acid homeostasis1.21E-02
153GO:0006783: heme biosynthetic process1.21E-02
154GO:0005982: starch metabolic process1.36E-02
155GO:0042761: very long-chain fatty acid biosynthetic process1.36E-02
156GO:0043067: regulation of programmed cell death1.36E-02
157GO:0006779: porphyrin-containing compound biosynthetic process1.36E-02
158GO:1900865: chloroplast RNA modification1.36E-02
159GO:0048354: mucilage biosynthetic process involved in seed coat development1.36E-02
160GO:0006949: syncytium formation1.52E-02
161GO:0015979: photosynthesis1.61E-02
162GO:0009684: indoleacetic acid biosynthetic process1.68E-02
163GO:0010015: root morphogenesis1.68E-02
164GO:0019684: photosynthesis, light reaction1.68E-02
165GO:1903507: negative regulation of nucleic acid-templated transcription1.68E-02
166GO:0006415: translational termination1.68E-02
167GO:0018119: peptidyl-cysteine S-nitrosylation1.68E-02
168GO:0009409: response to cold1.73E-02
169GO:0045087: innate immune response1.85E-02
170GO:0006413: translational initiation1.87E-02
171GO:0009725: response to hormone2.03E-02
172GO:0006631: fatty acid metabolic process2.20E-02
173GO:0010020: chloroplast fission2.21E-02
174GO:0010114: response to red light2.39E-02
175GO:0006071: glycerol metabolic process2.59E-02
176GO:0000162: tryptophan biosynthetic process2.59E-02
177GO:0010025: wax biosynthetic process2.59E-02
178GO:0005992: trehalose biosynthetic process2.79E-02
179GO:0009116: nucleoside metabolic process2.79E-02
180GO:0006289: nucleotide-excision repair2.79E-02
181GO:0008299: isoprenoid biosynthetic process2.99E-02
182GO:0016575: histone deacetylation2.99E-02
183GO:0043622: cortical microtubule organization2.99E-02
184GO:0042538: hyperosmotic salinity response3.01E-02
185GO:0048511: rhythmic process3.20E-02
186GO:0016114: terpenoid biosynthetic process3.20E-02
187GO:0007005: mitochondrion organization3.42E-02
188GO:0031348: negative regulation of defense response3.42E-02
189GO:0019748: secondary metabolic process3.42E-02
190GO:0009814: defense response, incompatible interaction3.42E-02
191GO:2000022: regulation of jasmonic acid mediated signaling pathway3.42E-02
192GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.64E-02
193GO:0010089: xylem development3.86E-02
194GO:0016117: carotenoid biosynthetic process4.08E-02
195GO:0008284: positive regulation of cell proliferation4.08E-02
196GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.08E-02
197GO:0010087: phloem or xylem histogenesis4.32E-02
198GO:0006606: protein import into nucleus4.32E-02
199GO:0000271: polysaccharide biosynthetic process4.32E-02
200GO:0008033: tRNA processing4.32E-02
201GO:0010197: polar nucleus fusion4.55E-02
202GO:0009741: response to brassinosteroid4.55E-02
203GO:0009958: positive gravitropism4.55E-02
204GO:0045489: pectin biosynthetic process4.55E-02
205GO:0080167: response to karrikin4.58E-02
206GO:0007018: microtubule-based movement4.79E-02
207GO:0042752: regulation of circadian rhythm4.79E-02
208GO:0009646: response to absence of light4.79E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0003937: IMP cyclohydrolase activity0.00E+00
7GO:0005227: calcium activated cation channel activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0043864: indoleacetamide hydrolase activity0.00E+00
10GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
11GO:0008115: sarcosine oxidase activity0.00E+00
12GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
13GO:0050613: delta14-sterol reductase activity0.00E+00
14GO:0005363: maltose transmembrane transporter activity0.00E+00
15GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
16GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
17GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
18GO:0043014: alpha-tubulin binding0.00E+00
19GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
20GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
21GO:0051721: protein phosphatase 2A binding0.00E+00
22GO:0015229: L-ascorbic acid transporter activity0.00E+00
23GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
24GO:0042903: tubulin deacetylase activity0.00E+00
25GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
26GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
27GO:0070402: NADPH binding1.29E-07
28GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.14E-05
29GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.14E-05
30GO:0005525: GTP binding5.05E-05
31GO:0016851: magnesium chelatase activity8.23E-05
32GO:0001053: plastid sigma factor activity1.43E-04
33GO:0016987: sigma factor activity1.43E-04
34GO:0004040: amidase activity2.19E-04
35GO:0005528: FK506 binding3.28E-04
36GO:0004017: adenylate kinase activity4.12E-04
37GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.09E-04
38GO:0005344: oxygen transporter activity5.09E-04
39GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.09E-04
40GO:0004733: pyridoxamine-phosphate oxidase activity5.09E-04
41GO:0004856: xylulokinase activity5.09E-04
42GO:0009496: plastoquinol--plastocyanin reductase activity5.09E-04
43GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.09E-04
44GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.09E-04
45GO:0004813: alanine-tRNA ligase activity5.09E-04
46GO:0004853: uroporphyrinogen decarboxylase activity5.09E-04
47GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.09E-04
48GO:0052856: NADHX epimerase activity5.09E-04
49GO:0052857: NADPHX epimerase activity5.09E-04
50GO:0043022: ribosome binding6.59E-04
51GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.90E-04
52GO:0010291: carotene beta-ring hydroxylase activity1.10E-03
53GO:0017118: lipoyltransferase activity1.10E-03
54GO:0009977: proton motive force dependent protein transmembrane transporter activity1.10E-03
55GO:0016415: octanoyltransferase activity1.10E-03
56GO:0004817: cysteine-tRNA ligase activity1.10E-03
57GO:0004829: threonine-tRNA ligase activity1.10E-03
58GO:0004512: inositol-3-phosphate synthase activity1.10E-03
59GO:0015462: ATPase-coupled protein transmembrane transporter activity1.79E-03
60GO:0046524: sucrose-phosphate synthase activity1.79E-03
61GO:0003913: DNA photolyase activity1.79E-03
62GO:0003924: GTPase activity2.00E-03
63GO:0008236: serine-type peptidase activity2.21E-03
64GO:0043023: ribosomal large subunit binding2.60E-03
65GO:0019201: nucleotide kinase activity2.60E-03
66GO:0048487: beta-tubulin binding2.60E-03
67GO:0004792: thiosulfate sulfurtransferase activity2.60E-03
68GO:0016149: translation release factor activity, codon specific2.60E-03
69GO:0016656: monodehydroascorbate reductase (NADH) activity2.60E-03
70GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.60E-03
71GO:0046556: alpha-L-arabinofuranosidase activity3.50E-03
72GO:0004659: prenyltransferase activity3.50E-03
73GO:0016279: protein-lysine N-methyltransferase activity3.50E-03
74GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.50E-03
75GO:0070628: proteasome binding3.50E-03
76GO:0004045: aminoacyl-tRNA hydrolase activity3.50E-03
77GO:0009044: xylan 1,4-beta-xylosidase activity3.50E-03
78GO:0004252: serine-type endopeptidase activity3.50E-03
79GO:0004176: ATP-dependent peptidase activity3.77E-03
80GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.49E-03
81GO:0016773: phosphotransferase activity, alcohol group as acceptor4.49E-03
82GO:0030570: pectate lyase activity4.51E-03
83GO:2001070: starch binding5.56E-03
84GO:0031593: polyubiquitin binding5.56E-03
85GO:0004526: ribonuclease P activity5.56E-03
86GO:0042578: phosphoric ester hydrolase activity5.56E-03
87GO:0016853: isomerase activity6.67E-03
88GO:0016832: aldehyde-lyase activity6.71E-03
89GO:0004144: diacylglycerol O-acyltransferase activity6.71E-03
90GO:0005261: cation channel activity6.71E-03
91GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.71E-03
92GO:0005338: nucleotide-sugar transmembrane transporter activity7.95E-03
93GO:0009881: photoreceptor activity7.95E-03
94GO:0008312: 7S RNA binding9.25E-03
95GO:0004033: aldo-keto reductase (NADP) activity9.25E-03
96GO:0008237: metallopeptidase activity9.91E-03
97GO:0051082: unfolded protein binding1.02E-02
98GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.06E-02
99GO:0003747: translation release factor activity1.21E-02
100GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.46E-02
101GO:0004805: trehalose-phosphatase activity1.52E-02
102GO:0052689: carboxylic ester hydrolase activity1.53E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.68E-02
104GO:0044183: protein binding involved in protein folding1.68E-02
105GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.69E-02
106GO:0003746: translation elongation factor activity1.85E-02
107GO:0000049: tRNA binding1.85E-02
108GO:0031072: heat shock protein binding2.03E-02
109GO:0005315: inorganic phosphate transmembrane transporter activity2.03E-02
110GO:0051539: 4 iron, 4 sulfur cluster binding2.11E-02
111GO:0008083: growth factor activity2.21E-02
112GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.21E-02
113GO:0008266: poly(U) RNA binding2.21E-02
114GO:0003723: RNA binding2.48E-02
115GO:0003743: translation initiation factor activity2.48E-02
116GO:0051537: 2 iron, 2 sulfur cluster binding2.59E-02
117GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.59E-02
118GO:0043621: protein self-association2.59E-02
119GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.59E-02
120GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.59E-02
121GO:0051536: iron-sulfur cluster binding2.79E-02
122GO:0004407: histone deacetylase activity2.79E-02
123GO:0043130: ubiquitin binding2.79E-02
124GO:0003714: transcription corepressor activity2.79E-02
125GO:0015079: potassium ion transmembrane transporter activity2.99E-02
126GO:0033612: receptor serine/threonine kinase binding3.20E-02
127GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.23E-02
128GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.42E-02
129GO:0016788: hydrolase activity, acting on ester bonds3.60E-02
130GO:0008514: organic anion transmembrane transporter activity3.86E-02
131GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.93E-02
132GO:0050660: flavin adenine dinucleotide binding4.21E-02
133GO:0022857: transmembrane transporter activity4.31E-02
134GO:0008536: Ran GTPase binding4.55E-02
135GO:0008080: N-acetyltransferase activity4.55E-02
136GO:0010181: FMN binding4.79E-02
<
Gene type



Gene DE type