GO Enrichment Analysis of Co-expressed Genes with
AT4G02100
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0000819: sister chromatid segregation | 0.00E+00 |
| 5 | GO:0044774: mitotic DNA integrity checkpoint | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 8 | GO:0033206: meiotic cytokinesis | 0.00E+00 |
| 9 | GO:0042793: transcription from plastid promoter | 3.28E-05 |
| 10 | GO:0010501: RNA secondary structure unwinding | 4.42E-05 |
| 11 | GO:2000033: regulation of seed dormancy process | 4.63E-05 |
| 12 | GO:0006353: DNA-templated transcription, termination | 8.08E-05 |
| 13 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 8.08E-05 |
| 14 | GO:0034757: negative regulation of iron ion transport | 1.25E-04 |
| 15 | GO:1903866: palisade mesophyll development | 1.25E-04 |
| 16 | GO:0090063: positive regulation of microtubule nucleation | 1.25E-04 |
| 17 | GO:0010029: regulation of seed germination | 1.30E-04 |
| 18 | GO:0009793: embryo development ending in seed dormancy | 1.58E-04 |
| 19 | GO:0006259: DNA metabolic process | 1.79E-04 |
| 20 | GO:0006265: DNA topological change | 2.10E-04 |
| 21 | GO:1901529: positive regulation of anion channel activity | 2.90E-04 |
| 22 | GO:0033566: gamma-tubulin complex localization | 2.90E-04 |
| 23 | GO:0009967: positive regulation of signal transduction | 2.90E-04 |
| 24 | GO:0010569: regulation of double-strand break repair via homologous recombination | 2.90E-04 |
| 25 | GO:0048731: system development | 2.90E-04 |
| 26 | GO:0010271: regulation of chlorophyll catabolic process | 2.90E-04 |
| 27 | GO:0009658: chloroplast organization | 4.32E-04 |
| 28 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.36E-04 |
| 29 | GO:0009863: salicylic acid mediated signaling pathway | 4.36E-04 |
| 30 | GO:0010187: negative regulation of seed germination | 4.36E-04 |
| 31 | GO:0010476: gibberellin mediated signaling pathway | 4.78E-04 |
| 32 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 4.78E-04 |
| 33 | GO:0080117: secondary growth | 4.78E-04 |
| 34 | GO:0090391: granum assembly | 4.78E-04 |
| 35 | GO:0006364: rRNA processing | 5.03E-04 |
| 36 | GO:0071215: cellular response to abscisic acid stimulus | 6.28E-04 |
| 37 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.33E-04 |
| 38 | GO:0042127: regulation of cell proliferation | 6.80E-04 |
| 39 | GO:0010371: regulation of gibberellin biosynthetic process | 6.85E-04 |
| 40 | GO:0009102: biotin biosynthetic process | 6.85E-04 |
| 41 | GO:0007276: gamete generation | 6.85E-04 |
| 42 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 6.85E-04 |
| 43 | GO:0009740: gibberellic acid mediated signaling pathway | 7.27E-04 |
| 44 | GO:0006808: regulation of nitrogen utilization | 9.08E-04 |
| 45 | GO:0007059: chromosome segregation | 9.12E-04 |
| 46 | GO:0009749: response to glucose | 9.76E-04 |
| 47 | GO:0016123: xanthophyll biosynthetic process | 1.15E-03 |
| 48 | GO:0016120: carotene biosynthetic process | 1.15E-03 |
| 49 | GO:0016558: protein import into peroxisome matrix | 1.15E-03 |
| 50 | GO:0016554: cytidine to uridine editing | 1.41E-03 |
| 51 | GO:0042176: regulation of protein catabolic process | 1.41E-03 |
| 52 | GO:0048831: regulation of shoot system development | 1.41E-03 |
| 53 | GO:0009643: photosynthetic acclimation | 1.41E-03 |
| 54 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.68E-03 |
| 55 | GO:0000911: cytokinesis by cell plate formation | 1.68E-03 |
| 56 | GO:0048509: regulation of meristem development | 1.68E-03 |
| 57 | GO:0009739: response to gibberellin | 1.77E-03 |
| 58 | GO:0000712: resolution of meiotic recombination intermediates | 1.98E-03 |
| 59 | GO:0006401: RNA catabolic process | 1.98E-03 |
| 60 | GO:0010374: stomatal complex development | 1.98E-03 |
| 61 | GO:0006955: immune response | 1.98E-03 |
| 62 | GO:0030497: fatty acid elongation | 1.98E-03 |
| 63 | GO:0000082: G1/S transition of mitotic cell cycle | 1.98E-03 |
| 64 | GO:0010098: suspensor development | 1.98E-03 |
| 65 | GO:0010444: guard mother cell differentiation | 1.98E-03 |
| 66 | GO:0010218: response to far red light | 2.12E-03 |
| 67 | GO:0010492: maintenance of shoot apical meristem identity | 2.29E-03 |
| 68 | GO:0009642: response to light intensity | 2.29E-03 |
| 69 | GO:0042255: ribosome assembly | 2.29E-03 |
| 70 | GO:0006402: mRNA catabolic process | 2.29E-03 |
| 71 | GO:0009867: jasmonic acid mediated signaling pathway | 2.43E-03 |
| 72 | GO:0009827: plant-type cell wall modification | 2.61E-03 |
| 73 | GO:0010233: phloem transport | 2.61E-03 |
| 74 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.61E-03 |
| 75 | GO:0048574: long-day photoperiodism, flowering | 2.61E-03 |
| 76 | GO:0010052: guard cell differentiation | 2.61E-03 |
| 77 | GO:0032544: plastid translation | 2.61E-03 |
| 78 | GO:0048589: developmental growth | 2.95E-03 |
| 79 | GO:0000373: Group II intron splicing | 2.95E-03 |
| 80 | GO:0009744: response to sucrose | 3.12E-03 |
| 81 | GO:1900865: chloroplast RNA modification | 3.31E-03 |
| 82 | GO:0031425: chloroplast RNA processing | 3.31E-03 |
| 83 | GO:0009965: leaf morphogenesis | 3.50E-03 |
| 84 | GO:0016441: posttranscriptional gene silencing | 3.68E-03 |
| 85 | GO:0006949: syncytium formation | 3.68E-03 |
| 86 | GO:0006535: cysteine biosynthetic process from serine | 3.68E-03 |
| 87 | GO:0042538: hyperosmotic salinity response | 3.91E-03 |
| 88 | GO:0048229: gametophyte development | 4.06E-03 |
| 89 | GO:0048765: root hair cell differentiation | 4.06E-03 |
| 90 | GO:0000038: very long-chain fatty acid metabolic process | 4.06E-03 |
| 91 | GO:0009750: response to fructose | 4.06E-03 |
| 92 | GO:0006312: mitotic recombination | 4.45E-03 |
| 93 | GO:0012501: programmed cell death | 4.45E-03 |
| 94 | GO:0010152: pollen maturation | 4.45E-03 |
| 95 | GO:0010102: lateral root morphogenesis | 4.86E-03 |
| 96 | GO:0009887: animal organ morphogenesis | 5.28E-03 |
| 97 | GO:0010020: chloroplast fission | 5.28E-03 |
| 98 | GO:0080188: RNA-directed DNA methylation | 5.71E-03 |
| 99 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.15E-03 |
| 100 | GO:0019344: cysteine biosynthetic process | 6.61E-03 |
| 101 | GO:0000027: ribosomal large subunit assembly | 6.61E-03 |
| 102 | GO:0010431: seed maturation | 7.56E-03 |
| 103 | GO:0016998: cell wall macromolecule catabolic process | 7.56E-03 |
| 104 | GO:0006351: transcription, DNA-templated | 8.52E-03 |
| 105 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.56E-03 |
| 106 | GO:0006468: protein phosphorylation | 8.84E-03 |
| 107 | GO:0048443: stamen development | 9.07E-03 |
| 108 | GO:0070417: cellular response to cold | 9.60E-03 |
| 109 | GO:0010087: phloem or xylem histogenesis | 1.01E-02 |
| 110 | GO:0042335: cuticle development | 1.01E-02 |
| 111 | GO:0008033: tRNA processing | 1.01E-02 |
| 112 | GO:0045490: pectin catabolic process | 1.03E-02 |
| 113 | GO:0009741: response to brassinosteroid | 1.07E-02 |
| 114 | GO:0006635: fatty acid beta-oxidation | 1.24E-02 |
| 115 | GO:0032502: developmental process | 1.30E-02 |
| 116 | GO:0010583: response to cyclopentenone | 1.30E-02 |
| 117 | GO:0031047: gene silencing by RNA | 1.30E-02 |
| 118 | GO:0030163: protein catabolic process | 1.36E-02 |
| 119 | GO:0010090: trichome morphogenesis | 1.36E-02 |
| 120 | GO:0009828: plant-type cell wall loosening | 1.42E-02 |
| 121 | GO:0045893: positive regulation of transcription, DNA-templated | 1.42E-02 |
| 122 | GO:0019760: glucosinolate metabolic process | 1.42E-02 |
| 123 | GO:0071805: potassium ion transmembrane transport | 1.48E-02 |
| 124 | GO:0006355: regulation of transcription, DNA-templated | 1.52E-02 |
| 125 | GO:0010027: thylakoid membrane organization | 1.61E-02 |
| 126 | GO:0042254: ribosome biogenesis | 1.63E-02 |
| 127 | GO:0015995: chlorophyll biosynthetic process | 1.81E-02 |
| 128 | GO:0009723: response to ethylene | 1.85E-02 |
| 129 | GO:0016311: dephosphorylation | 1.87E-02 |
| 130 | GO:0080167: response to karrikin | 1.99E-02 |
| 131 | GO:0000160: phosphorelay signal transduction system | 2.01E-02 |
| 132 | GO:0009737: response to abscisic acid | 2.33E-02 |
| 133 | GO:0051707: response to other organism | 2.75E-02 |
| 134 | GO:0008283: cell proliferation | 2.75E-02 |
| 135 | GO:0032259: methylation | 2.81E-02 |
| 136 | GO:0009636: response to toxic substance | 2.99E-02 |
| 137 | GO:0006397: mRNA processing | 3.06E-02 |
| 138 | GO:0009664: plant-type cell wall organization | 3.24E-02 |
| 139 | GO:0006813: potassium ion transport | 3.40E-02 |
| 140 | GO:0009736: cytokinin-activated signaling pathway | 3.40E-02 |
| 141 | GO:0009909: regulation of flower development | 3.66E-02 |
| 142 | GO:0006417: regulation of translation | 3.66E-02 |
| 143 | GO:0048316: seed development | 3.92E-02 |
| 144 | GO:0009734: auxin-activated signaling pathway | 4.12E-02 |
| 145 | GO:0006396: RNA processing | 4.47E-02 |
| 146 | GO:0051726: regulation of cell cycle | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 3 | GO:0003916: DNA topoisomerase activity | 7.04E-06 |
| 4 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 1.02E-04 |
| 5 | GO:0003723: RNA binding | 1.03E-04 |
| 6 | GO:0034335: DNA supercoiling activity | 1.25E-04 |
| 7 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.25E-04 |
| 8 | GO:0042834: peptidoglycan binding | 1.25E-04 |
| 9 | GO:0000989: transcription factor activity, transcription factor binding | 1.25E-04 |
| 10 | GO:0004004: ATP-dependent RNA helicase activity | 1.52E-04 |
| 11 | GO:0042389: omega-3 fatty acid desaturase activity | 2.90E-04 |
| 12 | GO:0005078: MAP-kinase scaffold activity | 2.90E-04 |
| 13 | GO:0009884: cytokinin receptor activity | 2.90E-04 |
| 14 | GO:0005034: osmosensor activity | 4.78E-04 |
| 15 | GO:0032947: protein complex scaffold | 4.78E-04 |
| 16 | GO:0070181: small ribosomal subunit rRNA binding | 4.78E-04 |
| 17 | GO:0030570: pectate lyase activity | 6.28E-04 |
| 18 | GO:0008097: 5S rRNA binding | 6.85E-04 |
| 19 | GO:0008026: ATP-dependent helicase activity | 8.42E-04 |
| 20 | GO:0010011: auxin binding | 9.08E-04 |
| 21 | GO:0019900: kinase binding | 1.68E-03 |
| 22 | GO:0004124: cysteine synthase activity | 1.68E-03 |
| 23 | GO:0003724: RNA helicase activity | 2.61E-03 |
| 24 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.61E-03 |
| 25 | GO:0008173: RNA methyltransferase activity | 2.61E-03 |
| 26 | GO:0005524: ATP binding | 3.56E-03 |
| 27 | GO:0004672: protein kinase activity | 3.61E-03 |
| 28 | GO:0004673: protein histidine kinase activity | 3.68E-03 |
| 29 | GO:0042803: protein homodimerization activity | 4.68E-03 |
| 30 | GO:0000155: phosphorelay sensor kinase activity | 4.86E-03 |
| 31 | GO:0000175: 3'-5'-exoribonuclease activity | 4.86E-03 |
| 32 | GO:0003725: double-stranded RNA binding | 4.86E-03 |
| 33 | GO:0004190: aspartic-type endopeptidase activity | 5.71E-03 |
| 34 | GO:0003779: actin binding | 5.78E-03 |
| 35 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.15E-03 |
| 36 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.15E-03 |
| 37 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.15E-03 |
| 38 | GO:0043424: protein histidine kinase binding | 7.08E-03 |
| 39 | GO:0015079: potassium ion transmembrane transporter activity | 7.08E-03 |
| 40 | GO:0003676: nucleic acid binding | 7.12E-03 |
| 41 | GO:0019843: rRNA binding | 7.46E-03 |
| 42 | GO:0008094: DNA-dependent ATPase activity | 7.56E-03 |
| 43 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 7.86E-03 |
| 44 | GO:0030170: pyridoxal phosphate binding | 8.28E-03 |
| 45 | GO:0003727: single-stranded RNA binding | 9.07E-03 |
| 46 | GO:0005102: receptor binding | 9.60E-03 |
| 47 | GO:0004674: protein serine/threonine kinase activity | 1.01E-02 |
| 48 | GO:0005515: protein binding | 1.01E-02 |
| 49 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.07E-02 |
| 50 | GO:0043565: sequence-specific DNA binding | 1.09E-02 |
| 51 | GO:0008168: methyltransferase activity | 1.54E-02 |
| 52 | GO:0003735: structural constituent of ribosome | 2.11E-02 |
| 53 | GO:0003697: single-stranded DNA binding | 2.30E-02 |
| 54 | GO:0003993: acid phosphatase activity | 2.37E-02 |
| 55 | GO:0003677: DNA binding | 2.56E-02 |
| 56 | GO:0004519: endonuclease activity | 3.19E-02 |
| 57 | GO:0003690: double-stranded DNA binding | 3.49E-02 |
| 58 | GO:0008289: lipid binding | 4.07E-02 |
| 59 | GO:0016874: ligase activity | 4.19E-02 |
| 60 | GO:0016746: transferase activity, transferring acyl groups | 4.47E-02 |
| 61 | GO:0004386: helicase activity | 4.65E-02 |