Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G02020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0034972: histone H3-R26 methylation0.00E+00
4GO:1901698: response to nitrogen compound0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0009606: tropism0.00E+00
7GO:0090322: regulation of superoxide metabolic process0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
10GO:1903224: regulation of endodermal cell differentiation0.00E+00
11GO:0043972: histone H3-K23 acetylation0.00E+00
12GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0097164: ammonium ion metabolic process0.00E+00
15GO:0045184: establishment of protein localization0.00E+00
16GO:0034971: histone H3-R17 methylation0.00E+00
17GO:0033206: meiotic cytokinesis0.00E+00
18GO:0090615: mitochondrial mRNA processing0.00E+00
19GO:0042794: rRNA transcription from plastid promoter0.00E+00
20GO:0034970: histone H3-R2 methylation0.00E+00
21GO:0044154: histone H3-K14 acetylation0.00E+00
22GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.92E-06
24GO:0042793: transcription from plastid promoter6.09E-06
25GO:0009734: auxin-activated signaling pathway8.89E-06
26GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine9.87E-06
27GO:0009416: response to light stimulus2.28E-05
28GO:0009658: chloroplast organization9.36E-05
29GO:2000038: regulation of stomatal complex development1.26E-04
30GO:0009913: epidermal cell differentiation2.75E-04
31GO:2000033: regulation of seed dormancy process3.68E-04
32GO:1905039: carboxylic acid transmembrane transport4.73E-04
33GO:1905200: gibberellic acid transmembrane transport4.73E-04
34GO:0080112: seed growth4.73E-04
35GO:0043971: histone H3-K18 acetylation4.73E-04
36GO:0090558: plant epidermis development4.73E-04
37GO:0010063: positive regulation of trichoblast fate specification4.73E-04
38GO:1903866: palisade mesophyll development4.73E-04
39GO:0035987: endodermal cell differentiation4.73E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation4.73E-04
41GO:0034757: negative regulation of iron ion transport4.73E-04
42GO:0042659: regulation of cell fate specification4.73E-04
43GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway4.74E-04
44GO:0006955: immune response4.74E-04
45GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.91E-04
46GO:0042255: ribosome assembly5.91E-04
47GO:0006353: DNA-templated transcription, termination5.91E-04
48GO:0010305: leaf vascular tissue pattern formation7.00E-04
49GO:0000373: Group II intron splicing8.62E-04
50GO:0006468: protein phosphorylation8.66E-04
51GO:1900865: chloroplast RNA modification1.01E-03
52GO:0010254: nectary development1.02E-03
53GO:1901529: positive regulation of anion channel activity1.02E-03
54GO:1902884: positive regulation of response to oxidative stress1.02E-03
55GO:1902326: positive regulation of chlorophyll biosynthetic process1.02E-03
56GO:0010569: regulation of double-strand break repair via homologous recombination1.02E-03
57GO:0070981: L-asparagine biosynthetic process1.02E-03
58GO:0010271: regulation of chlorophyll catabolic process1.02E-03
59GO:0010434: bract formation1.02E-03
60GO:0010541: acropetal auxin transport1.02E-03
61GO:0018026: peptidyl-lysine monomethylation1.02E-03
62GO:0009662: etioplast organization1.02E-03
63GO:1900033: negative regulation of trichome patterning1.02E-03
64GO:0048439: flower morphogenesis1.02E-03
65GO:1904143: positive regulation of carotenoid biosynthetic process1.02E-03
66GO:0080009: mRNA methylation1.02E-03
67GO:0006529: asparagine biosynthetic process1.02E-03
68GO:2000123: positive regulation of stomatal complex development1.02E-03
69GO:0048829: root cap development1.18E-03
70GO:0006351: transcription, DNA-templated1.25E-03
71GO:0010029: regulation of seed germination1.56E-03
72GO:0010582: floral meristem determinacy1.56E-03
73GO:0090708: specification of plant organ axis polarity1.66E-03
74GO:0080117: secondary growth1.66E-03
75GO:0090391: granum assembly1.66E-03
76GO:0006518: peptide metabolic process1.66E-03
77GO:0071705: nitrogen compound transport1.66E-03
78GO:0001578: microtubule bundle formation1.66E-03
79GO:0030029: actin filament-based process1.66E-03
80GO:0009954: proximal/distal pattern formation1.66E-03
81GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.66E-03
82GO:0010588: cotyledon vascular tissue pattern formation1.77E-03
83GO:0010540: basipetal auxin transport2.00E-03
84GO:0048481: plant ovule development2.04E-03
85GO:0080188: RNA-directed DNA methylation2.25E-03
86GO:0009800: cinnamic acid biosynthetic process2.41E-03
87GO:0043481: anthocyanin accumulation in tissues in response to UV light2.41E-03
88GO:0046739: transport of virus in multicellular host2.41E-03
89GO:1902290: positive regulation of defense response to oomycetes2.41E-03
90GO:0010371: regulation of gibberellin biosynthetic process2.41E-03
91GO:1902476: chloride transmembrane transport2.41E-03
92GO:0010071: root meristem specification2.41E-03
93GO:0051513: regulation of monopolar cell growth2.41E-03
94GO:0009102: biotin biosynthetic process2.41E-03
95GO:0010239: chloroplast mRNA processing2.41E-03
96GO:0009863: salicylic acid mediated signaling pathway2.78E-03
97GO:0010187: negative regulation of seed germination2.78E-03
98GO:2000377: regulation of reactive oxygen species metabolic process2.78E-03
99GO:0030104: water homeostasis3.24E-03
100GO:0006221: pyrimidine nucleotide biosynthetic process3.24E-03
101GO:0009956: radial pattern formation3.24E-03
102GO:0006808: regulation of nitrogen utilization3.24E-03
103GO:0006479: protein methylation3.24E-03
104GO:0048629: trichome patterning3.24E-03
105GO:1900864: mitochondrial RNA modification3.24E-03
106GO:0051322: anaphase3.24E-03
107GO:0071249: cellular response to nitrate3.24E-03
108GO:0003333: amino acid transmembrane transport3.37E-03
109GO:0016998: cell wall macromolecule catabolic process3.37E-03
110GO:0006355: regulation of transcription, DNA-templated3.98E-03
111GO:0032876: negative regulation of DNA endoreduplication4.15E-03
112GO:0080110: sporopollenin biosynthetic process4.15E-03
113GO:0030308: negative regulation of cell growth4.15E-03
114GO:0010375: stomatal complex patterning4.15E-03
115GO:0006544: glycine metabolic process4.15E-03
116GO:0048497: maintenance of floral organ identity4.15E-03
117GO:0042538: hyperosmotic salinity response5.11E-03
118GO:0016554: cytidine to uridine editing5.14E-03
119GO:0048831: regulation of shoot system development5.14E-03
120GO:0042176: regulation of protein catabolic process5.14E-03
121GO:0010315: auxin efflux5.14E-03
122GO:0003006: developmental process involved in reproduction5.14E-03
123GO:0006559: L-phenylalanine catabolic process5.14E-03
124GO:0009643: photosynthetic acclimation5.14E-03
125GO:0006563: L-serine metabolic process5.14E-03
126GO:0010087: phloem or xylem histogenesis5.14E-03
127GO:0010304: PSII associated light-harvesting complex II catabolic process5.14E-03
128GO:0009959: negative gravitropism5.14E-03
129GO:0008380: RNA splicing5.39E-03
130GO:0009736: cytokinin-activated signaling pathway5.60E-03
131GO:0009646: response to absence of light5.96E-03
132GO:0000911: cytokinesis by cell plate formation6.21E-03
133GO:0048509: regulation of meristem development6.21E-03
134GO:1901259: chloroplast rRNA processing6.21E-03
135GO:2000037: regulation of stomatal complex patterning6.21E-03
136GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.21E-03
137GO:0010310: regulation of hydrogen peroxide metabolic process6.21E-03
138GO:2000067: regulation of root morphogenesis6.21E-03
139GO:0009955: adaxial/abaxial pattern specification6.21E-03
140GO:0009909: regulation of flower development6.38E-03
141GO:0048825: cotyledon development6.40E-03
142GO:0080156: mitochondrial mRNA modification6.85E-03
143GO:0048367: shoot system development7.23E-03
144GO:0032502: developmental process7.32E-03
145GO:0006821: chloride transport7.34E-03
146GO:0048437: floral organ development7.34E-03
147GO:0010103: stomatal complex morphogenesis7.34E-03
148GO:0010090: trichome morphogenesis7.81E-03
149GO:0009740: gibberellic acid mediated signaling pathway8.15E-03
150GO:0001522: pseudouridine synthesis8.55E-03
151GO:0009642: response to light intensity8.55E-03
152GO:0030162: regulation of proteolysis8.55E-03
153GO:0048766: root hair initiation8.55E-03
154GO:0055075: potassium ion homeostasis8.55E-03
155GO:0052543: callose deposition in cell wall8.55E-03
156GO:0009733: response to auxin9.13E-03
157GO:0019430: removal of superoxide radicals9.82E-03
158GO:0009827: plant-type cell wall modification9.82E-03
159GO:0007186: G-protein coupled receptor signaling pathway9.82E-03
160GO:0001510: RNA methylation9.82E-03
161GO:0010233: phloem transport9.82E-03
162GO:0010497: plasmodesmata-mediated intercellular transport9.82E-03
163GO:0032544: plastid translation9.82E-03
164GO:0007389: pattern specification process9.82E-03
165GO:0044030: regulation of DNA methylation9.82E-03
166GO:0010027: thylakoid membrane organization9.94E-03
167GO:0048507: meristem development1.12E-02
168GO:0048589: developmental growth1.12E-02
169GO:0000902: cell morphogenesis1.12E-02
170GO:0042761: very long-chain fatty acid biosynthetic process1.25E-02
171GO:0035999: tetrahydrofolate interconversion1.25E-02
172GO:2000280: regulation of root development1.25E-02
173GO:0016571: histone methylation1.25E-02
174GO:0016573: histone acetylation1.25E-02
175GO:1900426: positive regulation of defense response to bacterium1.25E-02
176GO:0009845: seed germination1.30E-02
177GO:0000160: phosphorelay signal transduction system1.37E-02
178GO:0006535: cysteine biosynthetic process from serine1.40E-02
179GO:0009790: embryo development1.43E-02
180GO:0010218: response to far red light1.44E-02
181GO:0045892: negative regulation of transcription, DNA-templated1.49E-02
182GO:0015770: sucrose transport1.55E-02
183GO:0009750: response to fructose1.55E-02
184GO:0048765: root hair cell differentiation1.55E-02
185GO:0006865: amino acid transport1.58E-02
186GO:0009867: jasmonic acid mediated signaling pathway1.65E-02
187GO:0040008: regulation of growth1.67E-02
188GO:0015706: nitrate transport1.71E-02
189GO:0010152: pollen maturation1.71E-02
190GO:0008361: regulation of cell size1.71E-02
191GO:0012501: programmed cell death1.71E-02
192GO:0005975: carbohydrate metabolic process1.73E-02
193GO:0009793: embryo development ending in seed dormancy1.77E-02
194GO:0010102: lateral root morphogenesis1.87E-02
195GO:0009691: cytokinin biosynthetic process1.87E-02
196GO:0006541: glutamine metabolic process2.04E-02
197GO:0009739: response to gibberellin2.04E-02
198GO:0010020: chloroplast fission2.04E-02
199GO:0009933: meristem structural organization2.04E-02
200GO:0009266: response to temperature stimulus2.04E-02
201GO:0048467: gynoecium development2.04E-02
202GO:0008283: cell proliferation2.14E-02
203GO:0009926: auxin polar transport2.14E-02
204GO:0009825: multidimensional cell growth2.21E-02
205GO:0010167: response to nitrate2.21E-02
206GO:0009901: anther dehiscence2.21E-02
207GO:0006636: unsaturated fatty acid biosynthetic process2.39E-02
208GO:0006071: glycerol metabolic process2.39E-02
209GO:0006833: water transport2.39E-02
210GO:0009965: leaf morphogenesis2.40E-02
211GO:0009944: polarity specification of adaxial/abaxial axis2.57E-02
212GO:0080147: root hair cell development2.57E-02
213GO:0006338: chromatin remodeling2.57E-02
214GO:0019344: cysteine biosynthetic process2.57E-02
215GO:0006418: tRNA aminoacylation for protein translation2.76E-02
216GO:0006874: cellular calcium ion homeostasis2.76E-02
217GO:0051302: regulation of cell division2.76E-02
218GO:0010431: seed maturation2.95E-02
219GO:0007165: signal transduction3.31E-02
220GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.35E-02
221GO:0010082: regulation of root meristem growth3.35E-02
222GO:0071215: cellular response to abscisic acid stimulus3.35E-02
223GO:0010227: floral organ abscission3.35E-02
224GO:0048316: seed development3.52E-02
225GO:0048443: stamen development3.56E-02
226GO:0042127: regulation of cell proliferation3.56E-02
227GO:0006284: base-excision repair3.56E-02
228GO:0010584: pollen exine formation3.56E-02
229GO:0009723: response to ethylene3.67E-02
230GO:0070417: cellular response to cold3.77E-02
231GO:0016569: covalent chromatin modification3.86E-02
232GO:0000226: microtubule cytoskeleton organization3.98E-02
233GO:0042335: cuticle development3.98E-02
234GO:0080022: primary root development3.98E-02
235GO:0008033: tRNA processing3.98E-02
236GO:0042631: cellular response to water deprivation3.98E-02
237GO:0009958: positive gravitropism4.20E-02
238GO:0009741: response to brassinosteroid4.20E-02
239GO:0048544: recognition of pollen4.42E-02
240GO:0007018: microtubule-based movement4.42E-02
241GO:0009749: response to glucose4.65E-02
242GO:0009851: auxin biosynthetic process4.65E-02
RankGO TermAdjusted P value
1GO:0042834: peptidoglycan binding0.00E+00
2GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
5GO:0035241: protein-arginine omega-N monomethyltransferase activity9.87E-06
6GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity9.87E-06
7GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity9.87E-06
8GO:0008469: histone-arginine N-methyltransferase activity3.37E-05
9GO:0008168: methyltransferase activity4.42E-04
10GO:0016274: protein-arginine N-methyltransferase activity4.73E-04
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.73E-04
12GO:0004071: aspartate-ammonia ligase activity4.73E-04
13GO:0052381: tRNA dimethylallyltransferase activity4.73E-04
14GO:0004830: tryptophan-tRNA ligase activity4.73E-04
15GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor4.73E-04
16GO:0004016: adenylate cyclase activity4.73E-04
17GO:1905201: gibberellin transmembrane transporter activity4.73E-04
18GO:0003727: single-stranded RNA binding5.20E-04
19GO:0019901: protein kinase binding8.40E-04
20GO:0000989: transcription factor activity, transcription factor binding8.62E-04
21GO:0004674: protein serine/threonine kinase activity8.72E-04
22GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.02E-03
23GO:0009884: cytokinin receptor activity1.02E-03
24GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.02E-03
25GO:0042389: omega-3 fatty acid desaturase activity1.02E-03
26GO:0016868: intramolecular transferase activity, phosphotransferases1.02E-03
27GO:0017150: tRNA dihydrouridine synthase activity1.66E-03
28GO:0045548: phenylalanine ammonia-lyase activity1.66E-03
29GO:0032549: ribonucleoside binding1.66E-03
30GO:0070181: small ribosomal subunit rRNA binding1.66E-03
31GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.66E-03
32GO:0005034: osmosensor activity1.66E-03
33GO:0009982: pseudouridine synthase activity1.77E-03
34GO:0004222: metalloendopeptidase activity2.31E-03
35GO:0009041: uridylate kinase activity2.41E-03
36GO:0001872: (1->3)-beta-D-glucan binding2.41E-03
37GO:0019843: rRNA binding2.51E-03
38GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.06E-03
39GO:0010328: auxin influx transmembrane transporter activity3.24E-03
40GO:0010385: double-stranded methylated DNA binding3.24E-03
41GO:0005253: anion channel activity3.24E-03
42GO:0004930: G-protein coupled receptor activity3.24E-03
43GO:0016279: protein-lysine N-methyltransferase activity3.24E-03
44GO:0010011: auxin binding3.24E-03
45GO:0030570: pectate lyase activity4.03E-03
46GO:0004372: glycine hydroxymethyltransferase activity4.15E-03
47GO:0008725: DNA-3-methyladenine glycosylase activity4.15E-03
48GO:0003723: RNA binding4.19E-03
49GO:0005515: protein binding4.25E-03
50GO:0016208: AMP binding5.14E-03
51GO:0004784: superoxide dismutase activity5.14E-03
52GO:0005247: voltage-gated chloride channel activity5.14E-03
53GO:0001085: RNA polymerase II transcription factor binding5.54E-03
54GO:0016832: aldehyde-lyase activity6.21E-03
55GO:0019900: kinase binding6.21E-03
56GO:0004124: cysteine synthase activity6.21E-03
57GO:0003777: microtubule motor activity6.38E-03
58GO:0003677: DNA binding7.24E-03
59GO:0004650: polygalacturonase activity7.83E-03
60GO:0005200: structural constituent of cytoskeleton8.84E-03
61GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.82E-03
62GO:0008289: lipid binding1.03E-02
63GO:0008889: glycerophosphodiester phosphodiesterase activity1.12E-02
64GO:0043565: sequence-specific DNA binding1.13E-02
65GO:0009672: auxin:proton symporter activity1.25E-02
66GO:0016829: lyase activity1.30E-02
67GO:0030170: pyridoxal phosphate binding1.34E-02
68GO:0004673: protein histidine kinase activity1.40E-02
69GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.51E-02
70GO:0008515: sucrose transmembrane transporter activity1.55E-02
71GO:0001054: RNA polymerase I activity1.55E-02
72GO:0004871: signal transducer activity1.56E-02
73GO:0042803: protein homodimerization activity1.56E-02
74GO:0003700: transcription factor activity, sequence-specific DNA binding1.63E-02
75GO:0003725: double-stranded RNA binding1.87E-02
76GO:0004022: alcohol dehydrogenase (NAD) activity1.87E-02
77GO:0010329: auxin efflux transmembrane transporter activity1.87E-02
78GO:0031072: heat shock protein binding1.87E-02
79GO:0000155: phosphorelay sensor kinase activity1.87E-02
80GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.04E-02
81GO:0004970: ionotropic glutamate receptor activity2.21E-02
82GO:0051119: sugar transmembrane transporter activity2.21E-02
83GO:0005217: intracellular ligand-gated ion channel activity2.21E-02
84GO:0004190: aspartic-type endopeptidase activity2.21E-02
85GO:0004519: endonuclease activity2.26E-02
86GO:0005215: transporter activity2.37E-02
87GO:0015293: symporter activity2.40E-02
88GO:0043424: protein histidine kinase binding2.76E-02
89GO:0015079: potassium ion transmembrane transporter activity2.76E-02
90GO:0004176: ATP-dependent peptidase activity2.95E-02
91GO:0003690: double-stranded DNA binding2.98E-02
92GO:0015171: amino acid transmembrane transporter activity3.19E-02
93GO:0004812: aminoacyl-tRNA ligase activity3.77E-02
94GO:0005524: ATP binding3.95E-02
95GO:0003779: actin binding3.97E-02
96GO:0004402: histone acetyltransferase activity3.98E-02
97GO:0004672: protein kinase activity3.99E-02
98GO:0003713: transcription coactivator activity4.20E-02
99GO:0050662: coenzyme binding4.42E-02
100GO:0016762: xyloglucan:xyloglucosyl transferase activity4.88E-02
101GO:0048038: quinone binding4.88E-02
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Gene type



Gene DE type