Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01995

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
4GO:1902458: positive regulation of stomatal opening0.00E+00
5GO:2000505: regulation of energy homeostasis0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0031054: pre-miRNA processing0.00E+00
11GO:0042821: pyridoxal biosynthetic process0.00E+00
12GO:0042407: cristae formation0.00E+00
13GO:0090279: regulation of calcium ion import0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0015882: L-ascorbic acid transport0.00E+00
16GO:0042820: vitamin B6 catabolic process0.00E+00
17GO:0018023: peptidyl-lysine trimethylation0.00E+00
18GO:2001294: malonyl-CoA catabolic process0.00E+00
19GO:0006021: inositol biosynthetic process6.41E-07
20GO:1903426: regulation of reactive oxygen species biosynthetic process5.51E-06
21GO:0010207: photosystem II assembly9.31E-05
22GO:0045038: protein import into chloroplast thylakoid membrane1.19E-04
23GO:0045962: positive regulation of development, heterochronic1.72E-04
24GO:0010190: cytochrome b6f complex assembly1.72E-04
25GO:0046855: inositol phosphate dephosphorylation1.72E-04
26GO:0043686: co-translational protein modification3.50E-04
27GO:2000021: regulation of ion homeostasis3.50E-04
28GO:0010028: xanthophyll cycle3.50E-04
29GO:0034337: RNA folding3.50E-04
30GO:0048363: mucilage pectin metabolic process3.50E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.50E-04
32GO:0031426: polycistronic mRNA processing3.50E-04
33GO:0043266: regulation of potassium ion transport3.50E-04
34GO:0000481: maturation of 5S rRNA3.50E-04
35GO:0006659: phosphatidylserine biosynthetic process3.50E-04
36GO:2000070: regulation of response to water deprivation3.80E-04
37GO:0010206: photosystem II repair5.58E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process7.62E-04
39GO:0080185: effector dependent induction by symbiont of host immune response7.62E-04
40GO:0051262: protein tetramerization7.62E-04
41GO:1900871: chloroplast mRNA modification7.62E-04
42GO:0006423: cysteinyl-tRNA aminoacylation7.62E-04
43GO:0006435: threonyl-tRNA aminoacylation7.62E-04
44GO:0018026: peptidyl-lysine monomethylation7.62E-04
45GO:0071668: plant-type cell wall assembly7.62E-04
46GO:0010027: thylakoid membrane organization8.31E-04
47GO:0009773: photosynthetic electron transport in photosystem I8.86E-04
48GO:0006790: sulfur compound metabolic process1.01E-03
49GO:0016024: CDP-diacylglycerol biosynthetic process1.01E-03
50GO:0045493: xylan catabolic process1.23E-03
51GO:0000913: preprophase band assembly1.23E-03
52GO:0031022: nuclear migration along microfilament1.23E-03
53GO:0010589: leaf proximal/distal pattern formation1.23E-03
54GO:0006753: nucleoside phosphate metabolic process1.23E-03
55GO:0051604: protein maturation1.23E-03
56GO:0010143: cutin biosynthetic process1.29E-03
57GO:0046854: phosphatidylinositol phosphorylation1.44E-03
58GO:0015979: photosynthesis1.65E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.78E-03
60GO:0010371: regulation of gibberellin biosynthetic process1.78E-03
61GO:0006020: inositol metabolic process1.78E-03
62GO:0009102: biotin biosynthetic process1.78E-03
63GO:0009152: purine ribonucleotide biosynthetic process1.78E-03
64GO:0046653: tetrahydrofolate metabolic process1.78E-03
65GO:0010239: chloroplast mRNA processing1.78E-03
66GO:2000306: positive regulation of photomorphogenesis2.38E-03
67GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.38E-03
68GO:0022622: root system development2.38E-03
69GO:0009306: protein secretion2.80E-03
70GO:0031365: N-terminal protein amino acid modification3.05E-03
71GO:0009904: chloroplast accumulation movement3.05E-03
72GO:0009958: positive gravitropism3.53E-03
73GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.76E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.76E-03
75GO:0006655: phosphatidylglycerol biosynthetic process3.76E-03
76GO:0016554: cytidine to uridine editing3.76E-03
77GO:0032973: amino acid export3.76E-03
78GO:0009791: post-embryonic development4.07E-03
79GO:0030488: tRNA methylation4.54E-03
80GO:0042372: phylloquinone biosynthetic process4.54E-03
81GO:0034389: lipid particle organization4.54E-03
82GO:0009903: chloroplast avoidance movement4.54E-03
83GO:1901657: glycosyl compound metabolic process4.96E-03
84GO:0035196: production of miRNAs involved in gene silencing by miRNA5.36E-03
85GO:0032880: regulation of protein localization5.36E-03
86GO:0043090: amino acid import5.36E-03
87GO:0015937: coenzyme A biosynthetic process5.36E-03
88GO:0016559: peroxisome fission6.22E-03
89GO:0006605: protein targeting6.22E-03
90GO:0010078: maintenance of root meristem identity6.22E-03
91GO:0032508: DNA duplex unwinding6.22E-03
92GO:0055114: oxidation-reduction process6.67E-03
93GO:0043562: cellular response to nitrogen levels7.14E-03
94GO:0022900: electron transport chain7.14E-03
95GO:0015996: chlorophyll catabolic process7.14E-03
96GO:0007186: G-protein coupled receptor signaling pathway7.14E-03
97GO:0032544: plastid translation7.14E-03
98GO:0015995: chlorophyll biosynthetic process7.43E-03
99GO:0098656: anion transmembrane transport8.10E-03
100GO:0080144: amino acid homeostasis8.10E-03
101GO:0019432: triglyceride biosynthetic process8.10E-03
102GO:0048507: meristem development8.10E-03
103GO:0006783: heme biosynthetic process8.10E-03
104GO:1900426: positive regulation of defense response to bacterium9.10E-03
105GO:0043067: regulation of programmed cell death9.10E-03
106GO:0010267: production of ta-siRNAs involved in RNA interference9.10E-03
107GO:1900865: chloroplast RNA modification9.10E-03
108GO:0048354: mucilage biosynthetic process involved in seed coat development9.10E-03
109GO:0007568: aging9.53E-03
110GO:0048527: lateral root development9.53E-03
111GO:0045036: protein targeting to chloroplast1.01E-02
112GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-02
113GO:0006535: cysteine biosynthetic process from serine1.01E-02
114GO:0018119: peptidyl-cysteine S-nitrosylation1.12E-02
115GO:0009684: indoleacetic acid biosynthetic process1.12E-02
116GO:0019684: photosynthesis, light reaction1.12E-02
117GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
118GO:0008285: negative regulation of cell proliferation1.12E-02
119GO:1903507: negative regulation of nucleic acid-templated transcription1.12E-02
120GO:0045037: protein import into chloroplast stroma1.24E-02
121GO:0010588: cotyledon vascular tissue pattern formation1.35E-02
122GO:2000012: regulation of auxin polar transport1.35E-02
123GO:0030048: actin filament-based movement1.35E-02
124GO:0006006: glucose metabolic process1.35E-02
125GO:0009266: response to temperature stimulus1.48E-02
126GO:0048467: gynoecium development1.48E-02
127GO:0010020: chloroplast fission1.48E-02
128GO:0019253: reductive pentose-phosphate cycle1.48E-02
129GO:0009965: leaf morphogenesis1.52E-02
130GO:0019853: L-ascorbic acid biosynthetic process1.60E-02
131GO:0006071: glycerol metabolic process1.73E-02
132GO:0006636: unsaturated fatty acid biosynthetic process1.73E-02
133GO:0019344: cysteine biosynthetic process1.86E-02
134GO:0006289: nucleotide-excision repair1.86E-02
135GO:0010073: meristem maintenance2.00E-02
136GO:0008299: isoprenoid biosynthetic process2.00E-02
137GO:0016575: histone deacetylation2.00E-02
138GO:0009768: photosynthesis, light harvesting in photosystem I2.00E-02
139GO:0061077: chaperone-mediated protein folding2.13E-02
140GO:2000022: regulation of jasmonic acid mediated signaling pathway2.28E-02
141GO:0010227: floral organ abscission2.42E-02
142GO:0019722: calcium-mediated signaling2.57E-02
143GO:0008284: positive regulation of cell proliferation2.72E-02
144GO:0010087: phloem or xylem histogenesis2.88E-02
145GO:0000271: polysaccharide biosynthetic process2.88E-02
146GO:0080022: primary root development2.88E-02
147GO:0010197: polar nucleus fusion3.04E-02
148GO:0010182: sugar mediated signaling pathway3.04E-02
149GO:0009741: response to brassinosteroid3.04E-02
150GO:0045489: pectin biosynthetic process3.04E-02
151GO:0010305: leaf vascular tissue pattern formation3.04E-02
152GO:0007018: microtubule-based movement3.20E-02
153GO:0008654: phospholipid biosynthetic process3.36E-02
154GO:0009851: auxin biosynthetic process3.36E-02
155GO:0010183: pollen tube guidance3.36E-02
156GO:0048825: cotyledon development3.36E-02
157GO:0016032: viral process3.70E-02
158GO:0030163: protein catabolic process3.87E-02
159GO:0009409: response to cold3.96E-02
160GO:0009793: embryo development ending in seed dormancy3.98E-02
161GO:0007267: cell-cell signaling4.22E-02
162GO:0000910: cytokinesis4.40E-02
163GO:0007623: circadian rhythm4.48E-02
164GO:0016126: sterol biosynthetic process4.58E-02
165GO:0005975: carbohydrate metabolic process4.76E-02
166GO:0009627: systemic acquired resistance4.95E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
13GO:0015229: L-ascorbic acid transporter activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0052832: inositol monophosphate 3-phosphatase activity5.51E-06
16GO:0008934: inositol monophosphate 1-phosphatase activity5.51E-06
17GO:0052833: inositol monophosphate 4-phosphatase activity5.51E-06
18GO:0070402: NADPH binding1.94E-05
19GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.33E-04
20GO:0010347: L-galactose-1-phosphate phosphatase activity3.50E-04
21GO:0005227: calcium activated cation channel activity3.50E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.50E-04
23GO:0010945: CoA pyrophosphatase activity3.50E-04
24GO:0004856: xylulokinase activity3.50E-04
25GO:0009496: plastoquinol--plastocyanin reductase activity3.50E-04
26GO:0004853: uroporphyrinogen decarboxylase activity3.50E-04
27GO:0042586: peptide deformylase activity3.50E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.50E-04
29GO:0005080: protein kinase C binding3.50E-04
30GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.50E-04
31GO:0050017: L-3-cyanoalanine synthase activity7.62E-04
32GO:0042389: omega-3 fatty acid desaturase activity7.62E-04
33GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.62E-04
34GO:0009977: proton motive force dependent protein transmembrane transporter activity7.62E-04
35GO:0004817: cysteine-tRNA ligase activity7.62E-04
36GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity7.62E-04
37GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.62E-04
38GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity7.62E-04
39GO:0004829: threonine-tRNA ligase activity7.62E-04
40GO:0004512: inositol-3-phosphate synthase activity7.62E-04
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.62E-04
42GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.62E-04
43GO:0008236: serine-type peptidase activity1.08E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.23E-03
45GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.23E-03
46GO:0008864: formyltetrahydrofolate deformylase activity1.23E-03
47GO:0050734: hydroxycinnamoyltransferase activity1.23E-03
48GO:0005504: fatty acid binding1.23E-03
49GO:0003913: DNA photolyase activity1.23E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.23E-03
51GO:0016491: oxidoreductase activity1.61E-03
52GO:0043023: ribosomal large subunit binding1.78E-03
53GO:0035198: miRNA binding1.78E-03
54GO:0005528: FK506 binding1.78E-03
55GO:0048027: mRNA 5'-UTR binding1.78E-03
56GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.78E-03
57GO:0048487: beta-tubulin binding1.78E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.78E-03
59GO:0016851: magnesium chelatase activity1.78E-03
60GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.38E-03
61GO:0046556: alpha-L-arabinofuranosidase activity2.38E-03
62GO:0016279: protein-lysine N-methyltransferase activity2.38E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.38E-03
64GO:0004045: aminoacyl-tRNA hydrolase activity2.38E-03
65GO:0070628: proteasome binding2.38E-03
66GO:0045430: chalcone isomerase activity2.38E-03
67GO:0009044: xylan 1,4-beta-xylosidase activity2.38E-03
68GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.62E-03
69GO:0016846: carbon-sulfur lyase activity3.05E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor3.05E-03
71GO:0004040: amidase activity3.05E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.76E-03
73GO:0031593: polyubiquitin binding3.76E-03
74GO:0000210: NAD+ diphosphatase activity3.76E-03
75GO:0000293: ferric-chelate reductase activity3.76E-03
76GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.76E-03
77GO:0016208: AMP binding3.76E-03
78GO:0042578: phosphoric ester hydrolase activity3.76E-03
79GO:0048038: quinone binding4.36E-03
80GO:0004124: cysteine synthase activity4.54E-03
81GO:0051920: peroxiredoxin activity4.54E-03
82GO:0004017: adenylate kinase activity4.54E-03
83GO:0016832: aldehyde-lyase activity4.54E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.54E-03
85GO:0005261: cation channel activity4.54E-03
86GO:0009927: histidine phosphotransfer kinase activity4.54E-03
87GO:0004144: diacylglycerol O-acyltransferase activity4.54E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.54E-03
89GO:0016746: transferase activity, transferring acyl groups5.12E-03
90GO:0009881: photoreceptor activity5.36E-03
91GO:0016209: antioxidant activity6.22E-03
92GO:0004033: aldo-keto reductase (NADP) activity6.22E-03
93GO:0043022: ribosome binding6.22E-03
94GO:0005509: calcium ion binding6.94E-03
95GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.14E-03
96GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.14E-03
97GO:0008173: RNA methyltransferase activity7.14E-03
98GO:0102483: scopolin beta-glucosidase activity7.43E-03
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors9.53E-03
100GO:0008017: microtubule binding1.05E-02
101GO:0003993: acid phosphatase activity1.09E-02
102GO:0047372: acylglycerol lipase activity1.12E-02
103GO:0008422: beta-glucosidase activity1.14E-02
104GO:0005315: inorganic phosphate transmembrane transporter activity1.35E-02
105GO:0031072: heat shock protein binding1.35E-02
106GO:0003725: double-stranded RNA binding1.35E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity1.35E-02
108GO:0016787: hydrolase activity1.36E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding1.46E-02
110GO:0003774: motor activity1.48E-02
111GO:0008083: growth factor activity1.48E-02
112GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.48E-02
113GO:0031409: pigment binding1.73E-02
114GO:0016788: hydrolase activity, acting on ester bonds1.77E-02
115GO:0004407: histone deacetylase activity1.86E-02
116GO:0043130: ubiquitin binding1.86E-02
117GO:0003714: transcription corepressor activity1.86E-02
118GO:0051087: chaperone binding2.00E-02
119GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.28E-02
120GO:0030570: pectate lyase activity2.42E-02
121GO:0052689: carboxylic ester hydrolase activity2.57E-02
122GO:0008514: organic anion transmembrane transporter activity2.57E-02
123GO:0008080: N-acetyltransferase activity3.04E-02
124GO:0016853: isomerase activity3.20E-02
125GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.58E-02
126GO:0004252: serine-type endopeptidase activity3.61E-02
127GO:0003684: damaged DNA binding4.04E-02
128GO:0016791: phosphatase activity4.04E-02
129GO:0016168: chlorophyll binding4.77E-02
130GO:0005525: GTP binding4.90E-02
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Gene type



Gene DE type