co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0015979: photosynthesis	2.46E-18
9	GO:0015995: chlorophyll biosynthetic process	2.19E-17
10	GO:0032544: plastid translation	9.68E-12
11	GO:0009773: photosynthetic electron transport in photosystem I	1.34E-08
12	GO:0019252: starch biosynthetic process	3.40E-08
13	GO:0006000: fructose metabolic process	3.89E-08
14	GO:0009768: photosynthesis, light harvesting in photosystem I	1.56E-07
15	GO:0009735: response to cytokinin	1.63E-07
16	GO:0018298: protein-chromophore linkage	3.45E-07
17	GO:0010021: amylopectin biosynthetic process	5.46E-07
18	GO:0055114: oxidation-reduction process	1.70E-06
19	GO:0006094: gluconeogenesis	1.88E-06
20	GO:0010207: photosystem II assembly	2.51E-06
21	GO:0006002: fructose 6-phosphate metabolic process	1.43E-05
22	GO:0006783: heme biosynthetic process	1.98E-05
23	GO:0010114: response to red light	2.75E-05
24	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.86E-05
25	GO:0005986: sucrose biosynthetic process	6.73E-05
26	GO:0045727: positive regulation of translation	6.89E-05
27	GO:0010600: regulation of auxin biosynthetic process	6.89E-05
28	GO:0019253: reductive pentose-phosphate cycle	8.15E-05
29	GO:0010218: response to far red light	1.45E-04
30	GO:0009658: chloroplast organization	1.46E-04
31	GO:0009637: response to blue light	1.85E-04
32	GO:0009854: oxidative photosynthetic carbon pathway	2.12E-04
33	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.12E-04
34	GO:0009645: response to low light intensity stimulus	2.76E-04
35	GO:0010196: nonphotochemical quenching	2.76E-04
36	GO:0043489: RNA stabilization	3.29E-04
37	GO:0043953: protein transport by the Tat complex	3.29E-04
38	GO:1904966: positive regulation of vitamin E biosynthetic process	3.29E-04
39	GO:0051775: response to redox state	3.29E-04
40	GO:0071277: cellular response to calcium ion	3.29E-04
41	GO:1904964: positive regulation of phytol biosynthetic process	3.29E-04
42	GO:0065002: intracellular protein transmembrane transport	3.29E-04
43	GO:0080093: regulation of photorespiration	3.29E-04
44	GO:0031998: regulation of fatty acid beta-oxidation	3.29E-04
45	GO:0034337: RNA folding	3.29E-04
46	GO:0009704: de-etiolation	3.48E-04
47	GO:0010928: regulation of auxin mediated signaling pathway	3.48E-04
48	GO:0006754: ATP biosynthetic process	5.12E-04
49	GO:0006779: porphyrin-containing compound biosynthetic process	6.05E-04
50	GO:0006782: protoporphyrinogen IX biosynthetic process	7.06E-04
51	GO:0008616: queuosine biosynthetic process	7.18E-04
52	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.18E-04
53	GO:0018119: peptidyl-cysteine S-nitrosylation	8.13E-04
54	GO:0006412: translation	9.92E-04
55	GO:0006108: malate metabolic process	1.05E-03
56	GO:0006518: peptide metabolic process	1.16E-03
57	GO:0044375: regulation of peroxisome size	1.16E-03
58	GO:0005977: glycogen metabolic process	1.16E-03
59	GO:0090391: granum assembly	1.16E-03
60	GO:0009409: response to cold	1.39E-03
61	GO:0034599: cellular response to oxidative stress	1.47E-03
62	GO:0006636: unsaturated fatty acid biosynthetic process	1.47E-03
63	GO:1901332: negative regulation of lateral root development	1.67E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.67E-03
65	GO:0006020: inositol metabolic process	1.67E-03
66	GO:0071484: cellular response to light intensity	1.67E-03
67	GO:0006107: oxaloacetate metabolic process	1.67E-03
68	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.67E-03
69	GO:0033014: tetrapyrrole biosynthetic process	1.67E-03
70	GO:0010731: protein glutathionylation	1.67E-03
71	GO:0031408: oxylipin biosynthetic process	1.97E-03
72	GO:0019748: secondary metabolic process	2.16E-03
73	GO:0042742: defense response to bacterium	2.17E-03
74	GO:0006021: inositol biosynthetic process	2.24E-03
75	GO:0006734: NADH metabolic process	2.24E-03
76	GO:0015976: carbon utilization	2.24E-03
77	GO:0009765: photosynthesis, light harvesting	2.24E-03
78	GO:0006109: regulation of carbohydrate metabolic process	2.24E-03
79	GO:0006536: glutamate metabolic process	2.24E-03
80	GO:0006546: glycine catabolic process	2.24E-03
81	GO:0006364: rRNA processing	2.81E-03
82	GO:0006656: phosphatidylcholine biosynthetic process	2.87E-03
83	GO:0006564: L-serine biosynthetic process	2.87E-03
84	GO:0043097: pyrimidine nucleoside salvage	2.87E-03
85	GO:0006097: glyoxylate cycle	2.87E-03
86	GO:0009107: lipoate biosynthetic process	2.87E-03
87	GO:0000304: response to singlet oxygen	2.87E-03
88	GO:0042631: cellular response to water deprivation	3.00E-03
89	GO:0006662: glycerol ether metabolic process	3.23E-03
90	GO:0006206: pyrimidine nucleobase metabolic process	3.54E-03
91	GO:0046855: inositol phosphate dephosphorylation	3.54E-03
92	GO:0006014: D-ribose metabolic process	3.54E-03
93	GO:0050665: hydrogen peroxide biosynthetic process	3.54E-03
94	GO:0042549: photosystem II stabilization	3.54E-03
95	GO:1901259: chloroplast rRNA processing	4.26E-03
96	GO:0010189: vitamin E biosynthetic process	4.26E-03
97	GO:0006810: transport	5.01E-03
98	GO:1900057: positive regulation of leaf senescence	5.03E-03
99	GO:0010161: red light signaling pathway	5.03E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	5.03E-03
101	GO:0005975: carbohydrate metabolic process	5.38E-03
102	GO:0010027: thylakoid membrane organization	5.76E-03
103	GO:0016559: peroxisome fission	5.85E-03
104	GO:0048564: photosystem I assembly	5.85E-03
105	GO:0005978: glycogen biosynthetic process	5.85E-03
106	GO:0009642: response to light intensity	5.85E-03
107	GO:0009657: plastid organization	6.71E-03
108	GO:0006526: arginine biosynthetic process	6.71E-03
109	GO:0071482: cellular response to light stimulus	6.71E-03
110	GO:0090333: regulation of stomatal closure	7.60E-03
111	GO:0010206: photosystem II repair	7.60E-03
112	GO:0006633: fatty acid biosynthetic process	7.84E-03
113	GO:0005982: starch metabolic process	8.55E-03
114	GO:0010205: photoinhibition	8.55E-03
115	GO:0016051: carbohydrate biosynthetic process	9.55E-03
116	GO:0009853: photorespiration	9.55E-03
117	GO:0006099: tricarboxylic acid cycle	9.99E-03
118	GO:0000272: polysaccharide catabolic process	1.06E-02
119	GO:0009750: response to fructose	1.06E-02
120	GO:0019684: photosynthesis, light reaction	1.06E-02
121	GO:0009698: phenylpropanoid metabolic process	1.06E-02
122	GO:0043085: positive regulation of catalytic activity	1.06E-02
123	GO:0006790: sulfur compound metabolic process	1.16E-02
124	GO:0005983: starch catabolic process	1.16E-02
125	GO:0006807: nitrogen compound metabolic process	1.27E-02
126	GO:0018107: peptidyl-threonine phosphorylation	1.27E-02
127	GO:0009767: photosynthetic electron transport chain	1.27E-02
128	GO:0009644: response to high light intensity	1.34E-02
129	GO:0009266: response to temperature stimulus	1.38E-02
130	GO:0005985: sucrose metabolic process	1.50E-02
131	GO:0046854: phosphatidylinositol phosphorylation	1.50E-02
132	GO:0007031: peroxisome organization	1.50E-02
133	GO:0042254: ribosome biogenesis	1.58E-02
134	GO:0019762: glucosinolate catabolic process	1.62E-02
135	GO:0009585: red, far-red light phototransduction	1.67E-02
136	GO:0000027: ribosomal large subunit assembly	1.75E-02
137	GO:0061077: chaperone-mediated protein folding	2.00E-02
138	GO:0035428: hexose transmembrane transport	2.14E-02
139	GO:0010017: red or far-red light signaling pathway	2.14E-02
140	GO:0016226: iron-sulfur cluster assembly	2.14E-02
141	GO:0009625: response to insect	2.27E-02
142	GO:0009693: ethylene biosynthetic process	2.27E-02
143	GO:0006396: RNA processing	2.45E-02
144	GO:0045454: cell redox homeostasis	2.54E-02
145	GO:0006606: protein import into nucleus	2.70E-02
146	GO:0046323: glucose import	2.85E-02
147	GO:0006520: cellular amino acid metabolic process	2.85E-02
148	GO:0015986: ATP synthesis coupled proton transport	3.00E-02
149	GO:0032259: methylation	3.12E-02
150	GO:0000302: response to reactive oxygen species	3.31E-02
151	GO:0009567: double fertilization forming a zygote and endosperm	3.79E-02
152	GO:0042128: nitrate assimilation	4.65E-02
153	GO:0010411: xyloglucan metabolic process	4.82E-02
154	GO:0006950: response to stress	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0008974: phosphoribulokinase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
6	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
12	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
13	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
14	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	0.00E+00
16	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
17	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
18	GO:0090711: FMN hydrolase activity	0.00E+00
19	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
20	GO:0045550: geranylgeranyl reductase activity	0.00E+00
21	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
22	GO:0019843: rRNA binding	2.10E-10
23	GO:0031409: pigment binding	8.60E-08
24	GO:0016168: chlorophyll binding	1.75E-07
25	GO:0016851: magnesium chelatase activity	1.88E-07
26	GO:0008266: poly(U) RNA binding	2.51E-06
27	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.91E-06
28	GO:0003735: structural constituent of ribosome	2.95E-05
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.89E-05
30	GO:0009011: starch synthase activity	6.89E-05
31	GO:0005528: FK506 binding	1.34E-04
32	GO:0016615: malate dehydrogenase activity	1.56E-04
33	GO:0030060: L-malate dehydrogenase activity	2.12E-04
34	GO:0004325: ferrochelatase activity	3.29E-04
35	GO:0004853: uroporphyrinogen decarboxylase activity	3.29E-04
36	GO:0008746: NAD(P)+ transhydrogenase activity	3.29E-04
37	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.29E-04
38	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.29E-04
39	GO:0016776: phosphotransferase activity, phosphate group as acceptor	3.29E-04
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.64E-04
41	GO:0016491: oxidoreductase activity	4.14E-04
42	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.26E-04
43	GO:0030234: enzyme regulator activity	7.06E-04
44	GO:0000234: phosphoethanolamine N-methyltransferase activity	7.18E-04
45	GO:0008883: glutamyl-tRNA reductase activity	7.18E-04
46	GO:0042389: omega-3 fatty acid desaturase activity	7.18E-04
47	GO:0010297: heteropolysaccharide binding	7.18E-04
48	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.18E-04
49	GO:0004617: phosphoglycerate dehydrogenase activity	7.18E-04
50	GO:0004047: aminomethyltransferase activity	7.18E-04
51	GO:0052832: inositol monophosphate 3-phosphatase activity	7.18E-04
52	GO:0033201: alpha-1,4-glucan synthase activity	7.18E-04
53	GO:0008479: queuine tRNA-ribosyltransferase activity	7.18E-04
54	GO:0003844: 1,4-alpha-glucan branching enzyme activity	7.18E-04
55	GO:0016630: protochlorophyllide reductase activity	7.18E-04
56	GO:0008934: inositol monophosphate 1-phosphatase activity	7.18E-04
57	GO:0052833: inositol monophosphate 4-phosphatase activity	7.18E-04
58	GO:0019156: isoamylase activity	7.18E-04
59	GO:0004751: ribose-5-phosphate isomerase activity	1.16E-03
60	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.16E-03
61	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.16E-03
62	GO:0043169: cation binding	1.16E-03
63	GO:0004373: glycogen (starch) synthase activity	1.16E-03
64	GO:0016992: lipoate synthase activity	1.16E-03
65	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.67E-03
66	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.67E-03
67	GO:0004351: glutamate decarboxylase activity	1.67E-03
68	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.67E-03
69	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.67E-03
70	GO:0004185: serine-type carboxypeptidase activity	1.92E-03
71	GO:0051537: 2 iron, 2 sulfur cluster binding	2.12E-03
72	GO:0043495: protein anchor	2.24E-03
73	GO:0008891: glycolate oxidase activity	2.24E-03
74	GO:0008453: alanine-glyoxylate transaminase activity	2.24E-03
75	GO:0051287: NAD binding	2.45E-03
76	GO:0042802: identical protein binding	2.59E-03
77	GO:0047134: protein-disulfide reductase activity	2.77E-03
78	GO:0003959: NADPH dehydrogenase activity	2.87E-03
79	GO:0050662: coenzyme binding	3.47E-03
80	GO:0004791: thioredoxin-disulfide reductase activity	3.47E-03
81	GO:0004556: alpha-amylase activity	3.54E-03
82	GO:0042578: phosphoric ester hydrolase activity	3.54E-03
83	GO:0004332: fructose-bisphosphate aldolase activity	3.54E-03
84	GO:0004130: cytochrome-c peroxidase activity	3.54E-03
85	GO:0048038: quinone binding	3.98E-03
86	GO:0004747: ribokinase activity	4.26E-03
87	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.26E-03
88	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.26E-03
89	GO:0004849: uridine kinase activity	4.26E-03
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.54E-03
91	GO:0019899: enzyme binding	5.03E-03
92	GO:0004033: aldo-keto reductase (NADP) activity	5.85E-03
93	GO:0008865: fructokinase activity	5.85E-03
94	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.60E-03
95	GO:0071949: FAD binding	7.60E-03
96	GO:0004222: metalloendopeptidase activity	8.30E-03
97	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	8.55E-03
98	GO:0008047: enzyme activator activity	9.53E-03
99	GO:0003746: translation elongation factor activity	9.55E-03
100	GO:0009055: electron carrier activity	9.77E-03
101	GO:0005515: protein binding	1.15E-02
102	GO:0004089: carbonate dehydratase activity	1.27E-02
103	GO:0031072: heat shock protein binding	1.27E-02
104	GO:0004565: beta-galactosidase activity	1.27E-02
105	GO:0043621: protein self-association	1.34E-02
106	GO:0016887: ATPase activity	1.70E-02
107	GO:0051536: iron-sulfur cluster binding	1.75E-02
108	GO:0004857: enzyme inhibitor activity	1.75E-02
109	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.04E-02
110	GO:0022891: substrate-specific transmembrane transporter activity	2.27E-02
111	GO:0003727: single-stranded RNA binding	2.41E-02
112	GO:0015035: protein disulfide oxidoreductase activity	2.45E-02
113	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.85E-02
114	GO:0016787: hydrolase activity	2.93E-02
115	GO:0010181: FMN binding	3.00E-02
116	GO:0005355: glucose transmembrane transporter activity	3.00E-02
117	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.31E-02
118	GO:0008483: transaminase activity	3.96E-02
119	GO:0003729: mRNA binding	3.98E-02
120	GO:0016597: amino acid binding	4.13E-02
121	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.82E-02
122	GO:0004721: phosphoprotein phosphatase activity	4.82E-02