co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0090322: regulation of superoxide metabolic process	0.00E+00
3	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0033206: meiotic cytokinesis	0.00E+00
7	GO:0090615: mitochondrial mRNA processing	0.00E+00
8	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
9	GO:0044154: histone H3-K14 acetylation	0.00E+00
10	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
11	GO:0045014: negative regulation of transcription by glucose	0.00E+00
12	GO:0009658: chloroplast organization	5.73E-09
13	GO:0006353: DNA-templated transcription, termination	2.86E-06
14	GO:1900864: mitochondrial RNA modification	2.94E-05
15	GO:0009793: embryo development ending in seed dormancy	6.04E-05
16	GO:0042793: transcription from plastid promoter	6.98E-05
17	GO:2000033: regulation of seed dormancy process	9.69E-05
18	GO:0010501: RNA secondary structure unwinding	1.17E-04
19	GO:0006401: RNA catabolic process	1.29E-04
20	GO:0006364: rRNA processing	1.38E-04
21	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.64E-04
22	GO:0042255: ribosome assembly	1.64E-04
23	GO:0010342: endosperm cellularization	2.00E-04
24	GO:0034757: negative regulation of iron ion transport	2.00E-04
25	GO:0043971: histone H3-K18 acetylation	2.00E-04
26	GO:1903866: palisade mesophyll development	2.00E-04
27	GO:1900865: chloroplast RNA modification	2.97E-04
28	GO:0010029: regulation of seed germination	3.17E-04
29	GO:0010271: regulation of chlorophyll catabolic process	4.48E-04
30	GO:0010541: acropetal auxin transport	4.48E-04
31	GO:0009662: etioplast organization	4.48E-04
32	GO:0080009: mRNA methylation	4.48E-04
33	GO:1901529: positive regulation of anion channel activity	4.48E-04
34	GO:0010569: regulation of double-strand break repair via homologous recombination	4.48E-04
35	GO:0080188: RNA-directed DNA methylation	6.61E-04
36	GO:0080117: secondary growth	7.29E-04
37	GO:0090391: granum assembly	7.29E-04
38	GO:0006518: peptide metabolic process	7.29E-04
39	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	7.29E-04
40	GO:0010187: negative regulation of seed germination	8.13E-04
41	GO:2000377: regulation of reactive oxygen species metabolic process	8.13E-04
42	GO:0009863: salicylic acid mediated signaling pathway	8.13E-04
43	GO:0010371: regulation of gibberellin biosynthetic process	1.04E-03
44	GO:0009102: biotin biosynthetic process	1.04E-03
45	GO:0006808: regulation of nitrogen utilization	1.38E-03
46	GO:0006479: protein methylation	1.38E-03
47	GO:0000914: phragmoplast assembly	1.38E-03
48	GO:0010087: phloem or xylem histogenesis	1.47E-03
49	GO:0009740: gibberellic acid mediated signaling pathway	1.62E-03
50	GO:0080110: sporopollenin biosynthetic process	1.76E-03
51	GO:0016558: protein import into peroxisome matrix	1.76E-03
52	GO:0048497: maintenance of floral organ identity	1.76E-03
53	GO:0016123: xanthophyll biosynthetic process	1.76E-03
54	GO:0016120: carotene biosynthetic process	1.76E-03
55	GO:0006355: regulation of transcription, DNA-templated	1.80E-03
56	GO:0080156: mitochondrial mRNA modification	1.95E-03
57	GO:0009913: epidermal cell differentiation	2.17E-03
58	GO:0060918: auxin transport	2.17E-03
59	GO:0048831: regulation of shoot system development	2.17E-03
60	GO:0003006: developmental process involved in reproduction	2.17E-03
61	GO:0009643: photosynthetic acclimation	2.17E-03
62	GO:0016554: cytidine to uridine editing	2.17E-03
63	GO:0042176: regulation of protein catabolic process	2.17E-03
64	GO:0009942: longitudinal axis specification	2.60E-03
65	GO:0048509: regulation of meristem development	2.60E-03
66	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.60E-03
67	GO:0010310: regulation of hydrogen peroxide metabolic process	2.60E-03
68	GO:0010098: suspensor development	3.06E-03
69	GO:0006955: immune response	3.06E-03
70	GO:0006402: mRNA catabolic process	3.55E-03
71	GO:0009642: response to light intensity	3.55E-03
72	GO:0010218: response to far red light	4.02E-03
73	GO:0010100: negative regulation of photomorphogenesis	4.06E-03
74	GO:0032544: plastid translation	4.06E-03
75	GO:0044030: regulation of DNA methylation	4.06E-03
76	GO:0010233: phloem transport	4.06E-03
77	GO:0010497: plasmodesmata-mediated intercellular transport	4.06E-03
78	GO:0000373: Group II intron splicing	4.60E-03
79	GO:0048589: developmental growth	4.60E-03
80	GO:0048507: meristem development	4.60E-03
81	GO:0009867: jasmonic acid mediated signaling pathway	4.61E-03
82	GO:0006349: regulation of gene expression by genetic imprinting	5.15E-03
83	GO:0031425: chloroplast RNA processing	5.15E-03
84	GO:0006535: cysteine biosynthetic process from serine	5.74E-03
85	GO:0048829: root cap development	5.74E-03
86	GO:0016441: posttranscriptional gene silencing	5.74E-03
87	GO:0006949: syncytium formation	5.74E-03
88	GO:0010048: vernalization response	5.74E-03
89	GO:0009750: response to fructose	6.34E-03
90	GO:0010582: floral meristem determinacy	6.96E-03
91	GO:0010152: pollen maturation	6.96E-03
92	GO:0045037: protein import into chloroplast stroma	6.96E-03
93	GO:0042538: hyperosmotic salinity response	7.46E-03
94	GO:0010588: cotyledon vascular tissue pattern formation	7.61E-03
95	GO:0010102: lateral root morphogenesis	7.61E-03
96	GO:0009736: cytokinin-activated signaling pathway	8.01E-03
97	GO:0006270: DNA replication initiation	8.28E-03
98	GO:0010540: basipetal auxin transport	8.28E-03
99	GO:0048467: gynoecium development	8.28E-03
100	GO:0010020: chloroplast fission	8.28E-03
101	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.37E-03
102	GO:0048367: shoot system development	9.79E-03
103	GO:0006351: transcription, DNA-templated	9.88E-03
104	GO:0019344: cysteine biosynthetic process	1.04E-02
105	GO:0003333: amino acid transmembrane transport	1.19E-02
106	GO:0016998: cell wall macromolecule catabolic process	1.19E-02
107	GO:0010431: seed maturation	1.19E-02
108	GO:0006281: DNA repair	1.32E-02
109	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.35E-02
110	GO:0071215: cellular response to abscisic acid stimulus	1.35E-02
111	GO:0006397: mRNA processing	1.39E-02
112	GO:0010091: trichome branching	1.43E-02
113	GO:0010584: pollen exine formation	1.43E-02
114	GO:0048443: stamen development	1.43E-02
115	GO:0070417: cellular response to cold	1.52E-02
116	GO:0080022: primary root development	1.60E-02
117	GO:0008033: tRNA processing	1.60E-02
118	GO:0010305: leaf vascular tissue pattern formation	1.69E-02
119	GO:0009960: endosperm development	1.69E-02
120	GO:0007018: microtubule-based movement	1.78E-02
121	GO:0048825: cotyledon development	1.87E-02
122	GO:0009749: response to glucose	1.87E-02
123	GO:0040008: regulation of growth	1.89E-02
124	GO:0006635: fatty acid beta-oxidation	1.97E-02
125	GO:0009734: auxin-activated signaling pathway	2.03E-02
126	GO:0010583: response to cyclopentenone	2.06E-02
127	GO:0031047: gene silencing by RNA	2.06E-02
128	GO:0032502: developmental process	2.06E-02
129	GO:0009739: response to gibberellin	2.22E-02
130	GO:0009828: plant-type cell wall loosening	2.25E-02
131	GO:0008380: RNA splicing	2.37E-02
132	GO:0000910: cytokinesis	2.45E-02
133	GO:0010027: thylakoid membrane organization	2.55E-02
134	GO:0015995: chlorophyll biosynthetic process	2.87E-02
135	GO:0016311: dephosphorylation	2.98E-02
136	GO:0000160: phosphorelay signal transduction system	3.20E-02
137	GO:0045893: positive regulation of transcription, DNA-templated	3.22E-02
138	GO:0006970: response to osmotic stress	3.30E-02
139	GO:0006499: N-terminal protein myristoylation	3.31E-02
140	GO:0007049: cell cycle	3.42E-02
141	GO:0006865: amino acid transport	3.54E-02
142	GO:0009723: response to ethylene	3.55E-02
143	GO:0009744: response to sucrose	4.37E-02
144	GO:0009651: response to salt stress	4.53E-02
145	GO:0009636: response to toxic substance	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
2	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0004141: dethiobiotin synthase activity	0.00E+00
5	GO:0003723: RNA binding	2.77E-05
6	GO:0003697: single-stranded DNA binding	4.99E-05
7	GO:0003727: single-stranded RNA binding	9.23E-05
8	GO:0016274: protein-arginine N-methyltransferase activity	2.00E-04
9	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.00E-04
10	GO:0004016: adenylate cyclase activity	2.00E-04
11	GO:0042834: peptidoglycan binding	2.00E-04
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.00E-04
13	GO:0000989: transcription factor activity, transcription factor binding	2.49E-04
14	GO:0004004: ATP-dependent RNA helicase activity	3.65E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.48E-04
16	GO:0009884: cytokinin receptor activity	4.48E-04
17	GO:0000175: 3'-5'-exoribonuclease activity	5.25E-04
18	GO:0005034: osmosensor activity	7.29E-04
19	GO:0003690: double-stranded DNA binding	1.17E-03
20	GO:0010011: auxin binding	1.38E-03
21	GO:0010328: auxin influx transmembrane transporter activity	1.38E-03
22	GO:0010385: double-stranded methylated DNA binding	1.38E-03
23	GO:0008026: ATP-dependent helicase activity	1.89E-03
24	GO:0003688: DNA replication origin binding	2.17E-03
25	GO:0019843: rRNA binding	2.33E-03
26	GO:0019900: kinase binding	2.60E-03
27	GO:0004124: cysteine synthase activity	2.60E-03
28	GO:0005515: protein binding	3.25E-03
29	GO:0003724: RNA helicase activity	4.06E-03
30	GO:0004673: protein histidine kinase activity	5.74E-03
31	GO:0008168: methyltransferase activity	5.81E-03
32	GO:0003725: double-stranded RNA binding	7.61E-03
33	GO:0000155: phosphorelay sensor kinase activity	7.61E-03
34	GO:0009982: pseudouridine synthase activity	7.61E-03
35	GO:0003779: actin binding	1.11E-02
36	GO:0043424: protein histidine kinase binding	1.12E-02
37	GO:0004540: ribonuclease activity	1.19E-02
38	GO:0030570: pectate lyase activity	1.35E-02
39	GO:0004519: endonuclease activity	1.46E-02
40	GO:0043565: sequence-specific DNA binding	1.49E-02
41	GO:0018024: histone-lysine N-methyltransferase activity	1.52E-02
42	GO:0003677: DNA binding	1.55E-02
43	GO:0030170: pyridoxal phosphate binding	1.59E-02
44	GO:0004402: histone acetyltransferase activity	1.60E-02
45	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.63E-02
46	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.73E-02
47	GO:0050662: coenzyme binding	1.78E-02
48	GO:0019901: protein kinase binding	1.87E-02
49	GO:0008289: lipid binding	2.00E-02
50	GO:0016887: ATPase activity	2.29E-02
51	GO:0005096: GTPase activator activity	3.20E-02
52	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.31E-02
53	GO:0004222: metalloendopeptidase activity	3.31E-02
54	GO:0003993: acid phosphatase activity	3.77E-02
55	GO:0051539: 4 iron, 4 sulfur cluster binding	4.01E-02
56	GO:0042393: histone binding	4.01E-02
57	GO:0043621: protein self-association	4.62E-02
58	GO:0042803: protein homodimerization activity	4.75E-02
59	GO:0015293: symporter activity	4.75E-02
60	GO:0004871: signal transducer activity	4.75E-02