co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0035884: arabinan biosynthetic process	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0009606: tropism	0.00E+00
7	GO:0090322: regulation of superoxide metabolic process	0.00E+00
8	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0046486: glycerolipid metabolic process	0.00E+00
11	GO:0019988: charged-tRNA amino acid modification	0.00E+00
12	GO:0090615: mitochondrial mRNA processing	0.00E+00
13	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
14	GO:0042793: transcription from plastid promoter	4.84E-08
15	GO:0009658: chloroplast organization	1.24E-05
16	GO:0042127: regulation of cell proliferation	4.10E-05
17	GO:0006364: rRNA processing	1.66E-04
18	GO:0009913: epidermal cell differentiation	2.70E-04
19	GO:0006401: RNA catabolic process	4.66E-04
20	GO:0006955: immune response	4.66E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.67E-04
22	GO:0080112: seed growth	4.67E-04
23	GO:1905039: carboxylic acid transmembrane transport	4.67E-04
24	GO:1905200: gibberellic acid transmembrane transport	4.67E-04
25	GO:1903866: palisade mesophyll development	4.67E-04
26	GO:0010063: positive regulation of trichoblast fate specification	4.67E-04
27	GO:0090063: positive regulation of microtubule nucleation	4.67E-04
28	GO:0033206: meiotic cytokinesis	4.67E-04
29	GO:0034757: negative regulation of iron ion transport	4.67E-04
30	GO:0042255: ribosome assembly	5.81E-04
31	GO:0006353: DNA-templated transcription, termination	5.81E-04
32	GO:0010305: leaf vascular tissue pattern formation	6.85E-04
33	GO:0007389: pattern specification process	7.08E-04
34	GO:0009451: RNA modification	9.30E-04
35	GO:1900865: chloroplast RNA modification	9.98E-04
36	GO:1901529: positive regulation of anion channel activity	1.01E-03
37	GO:0033566: gamma-tubulin complex localization	1.01E-03
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.01E-03
39	GO:0048731: system development	1.01E-03
40	GO:0006650: glycerophospholipid metabolic process	1.01E-03
41	GO:0010271: regulation of chlorophyll catabolic process	1.01E-03
42	GO:2000071: regulation of defense response by callose deposition	1.01E-03
43	GO:0009662: etioplast organization	1.01E-03
44	GO:1904143: positive regulation of carotenoid biosynthetic process	1.01E-03
45	GO:0080009: mRNA methylation	1.01E-03
46	GO:0048829: root cap development	1.16E-03
47	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.64E-03
48	GO:0046168: glycerol-3-phosphate catabolic process	1.64E-03
49	GO:0080117: secondary growth	1.64E-03
50	GO:0090391: granum assembly	1.64E-03
51	GO:0006518: peptide metabolic process	1.64E-03
52	GO:0001578: microtubule bundle formation	1.64E-03
53	GO:0010588: cotyledon vascular tissue pattern formation	1.74E-03
54	GO:0010020: chloroplast fission	1.97E-03
55	GO:0010239: chloroplast mRNA processing	2.38E-03
56	GO:0007276: gamete generation	2.38E-03
57	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.38E-03
58	GO:0006072: glycerol-3-phosphate metabolic process	2.38E-03
59	GO:0010306: rhamnogalacturonan II biosynthetic process	2.38E-03
60	GO:1902290: positive regulation of defense response to oomycetes	2.38E-03
61	GO:0045017: glycerolipid biosynthetic process	2.38E-03
62	GO:0010371: regulation of gibberellin biosynthetic process	2.38E-03
63	GO:0010071: root meristem specification	2.38E-03
64	GO:2000377: regulation of reactive oxygen species metabolic process	2.73E-03
65	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.99E-03
66	GO:0009734: auxin-activated signaling pathway	3.05E-03
67	GO:0030001: metal ion transport	3.19E-03
68	GO:0051322: anaphase	3.20E-03
69	GO:0006221: pyrimidine nucleotide biosynthetic process	3.20E-03
70	GO:0006808: regulation of nitrogen utilization	3.20E-03
71	GO:0006479: protein methylation	3.20E-03
72	GO:1900864: mitochondrial RNA modification	3.20E-03
73	GO:0003333: amino acid transmembrane transport	3.31E-03
74	GO:0016998: cell wall macromolecule catabolic process	3.31E-03
75	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.63E-03
76	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.96E-03
77	GO:0080110: sporopollenin biosynthetic process	4.10E-03
78	GO:0016120: carotene biosynthetic process	4.10E-03
79	GO:0048497: maintenance of floral organ identity	4.10E-03
80	GO:0016123: xanthophyll biosynthetic process	4.10E-03
81	GO:0031347: regulation of defense response	4.77E-03
82	GO:0009416: response to light stimulus	4.81E-03
83	GO:0008033: tRNA processing	5.05E-03
84	GO:0010087: phloem or xylem histogenesis	5.05E-03
85	GO:0010118: stomatal movement	5.05E-03
86	GO:0016554: cytidine to uridine editing	5.08E-03
87	GO:1902456: regulation of stomatal opening	5.08E-03
88	GO:0010315: auxin efflux	5.08E-03
89	GO:0048831: regulation of shoot system development	5.08E-03
90	GO:0003006: developmental process involved in reproduction	5.08E-03
91	GO:0009643: photosynthetic acclimation	5.08E-03
92	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.08E-03
93	GO:0032259: methylation	5.19E-03
94	GO:0009741: response to brassinosteroid	5.44E-03
95	GO:0009955: adaxial/abaxial pattern specification	6.13E-03
96	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.13E-03
97	GO:2000033: regulation of seed dormancy process	6.13E-03
98	GO:1901259: chloroplast rRNA processing	6.13E-03
99	GO:0048509: regulation of meristem development	6.13E-03
100	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.13E-03
101	GO:0010310: regulation of hydrogen peroxide metabolic process	6.13E-03
102	GO:0048825: cotyledon development	6.28E-03
103	GO:0080156: mitochondrial mRNA modification	6.73E-03
104	GO:0009793: embryo development ending in seed dormancy	6.99E-03
105	GO:0048367: shoot system development	7.07E-03
106	GO:0010583: response to cyclopentenone	7.19E-03
107	GO:0032502: developmental process	7.19E-03
108	GO:0048437: floral organ development	7.25E-03
109	GO:0010444: guard mother cell differentiation	7.25E-03
110	GO:0000082: G1/S transition of mitotic cell cycle	7.25E-03
111	GO:0010103: stomatal complex morphogenesis	7.25E-03
112	GO:0009828: plant-type cell wall loosening	8.17E-03
113	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	8.44E-03
114	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.44E-03
115	GO:0006402: mRNA catabolic process	8.44E-03
116	GO:0009642: response to light intensity	8.44E-03
117	GO:0001522: pseudouridine synthesis	8.44E-03
118	GO:0046620: regulation of organ growth	8.44E-03
119	GO:0048766: root hair initiation	8.44E-03
120	GO:0010492: maintenance of shoot apical meristem identity	8.44E-03
121	GO:0052543: callose deposition in cell wall	8.44E-03
122	GO:0009733: response to auxin	8.79E-03
123	GO:0009827: plant-type cell wall modification	9.69E-03
124	GO:0019430: removal of superoxide radicals	9.69E-03
125	GO:0010233: phloem transport	9.69E-03
126	GO:0010497: plasmodesmata-mediated intercellular transport	9.69E-03
127	GO:0032544: plastid translation	9.69E-03
128	GO:0006351: transcription, DNA-templated	1.01E-02
129	GO:0010029: regulation of seed germination	1.03E-02
130	GO:0098656: anion transmembrane transport	1.10E-02
131	GO:0048507: meristem development	1.10E-02
132	GO:0000373: Group II intron splicing	1.10E-02
133	GO:0048589: developmental growth	1.10E-02
134	GO:0000902: cell morphogenesis	1.10E-02
135	GO:0006349: regulation of gene expression by genetic imprinting	1.24E-02
136	GO:0031425: chloroplast RNA processing	1.24E-02
137	GO:1900426: positive regulation of defense response to bacterium	1.24E-02
138	GO:0048481: plant ovule development	1.28E-02
139	GO:0010048: vernalization response	1.38E-02
140	GO:0006535: cysteine biosynthetic process from serine	1.38E-02
141	GO:0016441: posttranscriptional gene silencing	1.38E-02
142	GO:0006949: syncytium formation	1.38E-02
143	GO:0031627: telomeric loop formation	1.38E-02
144	GO:0009682: induced systemic resistance	1.53E-02
145	GO:0009089: lysine biosynthetic process via diaminopimelate	1.53E-02
146	GO:0015770: sucrose transport	1.53E-02
147	GO:1903507: negative regulation of nucleic acid-templated transcription	1.53E-02
148	GO:0009750: response to fructose	1.53E-02
149	GO:0048229: gametophyte development	1.53E-02
150	GO:0048765: root hair cell differentiation	1.53E-02
151	GO:0046856: phosphatidylinositol dephosphorylation	1.53E-02
152	GO:0006865: amino acid transport	1.55E-02
153	GO:0006355: regulation of transcription, DNA-templated	1.56E-02
154	GO:0009867: jasmonic acid mediated signaling pathway	1.62E-02
155	GO:0040008: regulation of growth	1.63E-02
156	GO:0012501: programmed cell death	1.69E-02
157	GO:0010152: pollen maturation	1.69E-02
158	GO:0045037: protein import into chloroplast stroma	1.69E-02
159	GO:0010582: floral meristem determinacy	1.69E-02
160	GO:0010102: lateral root morphogenesis	1.85E-02
161	GO:0048467: gynoecium development	2.01E-02
162	GO:0009887: animal organ morphogenesis	2.01E-02
163	GO:0009744: response to sucrose	2.10E-02
164	GO:0008380: RNA splicing	2.16E-02
165	GO:0009901: anther dehiscence	2.19E-02
166	GO:0006636: unsaturated fatty acid biosynthetic process	2.36E-02
167	GO:0009863: salicylic acid mediated signaling pathway	2.54E-02
168	GO:0010187: negative regulation of seed germination	2.54E-02
169	GO:0019344: cysteine biosynthetic process	2.54E-02
170	GO:0009664: plant-type cell wall organization	2.64E-02
171	GO:0010073: meristem maintenance	2.73E-02
172	GO:0006825: copper ion transport	2.73E-02
173	GO:0016114: terpenoid biosynthetic process	2.92E-02
174	GO:0010431: seed maturation	2.92E-02
175	GO:0030245: cellulose catabolic process	3.11E-02
176	GO:0007165: signal transduction	3.19E-02
177	GO:0006468: protein phosphorylation	3.29E-02
178	GO:0071215: cellular response to abscisic acid stimulus	3.31E-02
179	GO:0010082: regulation of root meristem growth	3.31E-02
180	GO:0048316: seed development	3.45E-02
181	GO:0010584: pollen exine formation	3.51E-02
182	GO:0048443: stamen development	3.51E-02
183	GO:0048366: leaf development	3.66E-02
184	GO:0070417: cellular response to cold	3.72E-02
185	GO:0009740: gibberellic acid mediated signaling pathway	3.79E-02
186	GO:0000226: microtubule cytoskeleton organization	3.93E-02
187	GO:0042335: cuticle development	3.93E-02
188	GO:0080022: primary root development	3.93E-02
189	GO:0010501: RNA secondary structure unwinding	3.93E-02
190	GO:0009624: response to nematode	4.02E-02
191	GO:0006396: RNA processing	4.14E-02
192	GO:0009960: endosperm development	4.15E-02
193	GO:0009958: positive gravitropism	4.15E-02
194	GO:0071472: cellular response to salt stress	4.15E-02
195	GO:0048868: pollen tube development	4.15E-02
196	GO:0051726: regulation of cell cycle	4.26E-02
197	GO:0007018: microtubule-based movement	4.37E-02
198	GO:0009646: response to absence of light	4.37E-02
199	GO:0009749: response to glucose	4.59E-02
200	GO:0008654: phospholipid biosynthetic process	4.59E-02
201	GO:0009851: auxin biosynthetic process	4.59E-02
202	GO:0002229: defense response to oomycetes	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0042834: peptidoglycan binding	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0003723: RNA binding	1.22E-06
7	GO:0008168: methyltransferase activity	4.25E-04
8	GO:1905201: gibberellin transmembrane transporter activity	4.67E-04
9	GO:0008836: diaminopimelate decarboxylase activity	4.67E-04
10	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.67E-04
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.67E-04
12	GO:0016274: protein-arginine N-methyltransferase activity	4.67E-04
13	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	4.67E-04
14	GO:0004654: polyribonucleotide nucleotidyltransferase activity	4.67E-04
15	GO:0004016: adenylate cyclase activity	4.67E-04
16	GO:0004519: endonuclease activity	4.98E-04
17	GO:0019843: rRNA binding	5.04E-04
18	GO:0003727: single-stranded RNA binding	5.08E-04
19	GO:0008173: RNA methyltransferase activity	7.08E-04
20	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	1.01E-03
21	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.01E-03
22	GO:0009884: cytokinin receptor activity	1.01E-03
23	GO:0042389: omega-3 fatty acid desaturase activity	1.01E-03
24	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	1.01E-03
25	GO:0017150: tRNA dihydrouridine synthase activity	1.64E-03
26	GO:0016805: dipeptidase activity	1.64E-03
27	GO:0005034: osmosensor activity	1.64E-03
28	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.64E-03
29	GO:0009982: pseudouridine synthase activity	1.74E-03
30	GO:0000175: 3'-5'-exoribonuclease activity	1.74E-03
31	GO:0009041: uridylate kinase activity	2.38E-03
32	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.98E-03
33	GO:0010328: auxin influx transmembrane transporter activity	3.20E-03
34	GO:0010011: auxin binding	3.20E-03
35	GO:0030570: pectate lyase activity	3.96E-03
36	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	5.08E-03
37	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	5.08E-03
38	GO:0004784: superoxide dismutase activity	5.08E-03
39	GO:0009378: four-way junction helicase activity	5.08E-03
40	GO:0001085: RNA polymerase II transcription factor binding	5.44E-03
41	GO:0016832: aldehyde-lyase activity	6.13E-03
42	GO:0019900: kinase binding	6.13E-03
43	GO:0004124: cysteine synthase activity	6.13E-03
44	GO:0008237: metallopeptidase activity	8.68E-03
45	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.98E-03
46	GO:0004674: protein serine/threonine kinase activity	9.66E-03
47	GO:0003724: RNA helicase activity	9.69E-03
48	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.69E-03
49	GO:0008289: lipid binding	9.96E-03
50	GO:0003677: DNA binding	1.10E-02
51	GO:0000989: transcription factor activity, transcription factor binding	1.10E-02
52	GO:0009672: auxin:proton symporter activity	1.24E-02
53	GO:0004673: protein histidine kinase activity	1.38E-02
54	GO:0004222: metalloendopeptidase activity	1.41E-02
55	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.48E-02
56	GO:0003691: double-stranded telomeric DNA binding	1.53E-02
57	GO:0008515: sucrose transmembrane transporter activity	1.53E-02
58	GO:0003697: single-stranded DNA binding	1.62E-02
59	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.69E-02
60	GO:0003725: double-stranded RNA binding	1.85E-02
61	GO:0010329: auxin efflux transmembrane transporter activity	1.85E-02
62	GO:0005315: inorganic phosphate transmembrane transporter activity	1.85E-02
63	GO:0000155: phosphorelay sensor kinase activity	1.85E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.01E-02
65	GO:0051119: sugar transmembrane transporter activity	2.19E-02
66	GO:0004190: aspartic-type endopeptidase activity	2.19E-02
67	GO:0005215: transporter activity	2.29E-02
68	GO:0043565: sequence-specific DNA binding	2.30E-02
69	GO:0015293: symporter activity	2.36E-02
70	GO:0003714: transcription corepressor activity	2.54E-02
71	GO:0043424: protein histidine kinase binding	2.73E-02
72	GO:0004540: ribonuclease activity	2.92E-02
73	GO:0004176: ATP-dependent peptidase activity	2.92E-02
74	GO:0003690: double-stranded DNA binding	2.93E-02
75	GO:0003777: microtubule motor activity	3.13E-02
76	GO:0015171: amino acid transmembrane transporter activity	3.13E-02
77	GO:0008810: cellulase activity	3.31E-02
78	GO:0008514: organic anion transmembrane transporter activity	3.51E-02
79	GO:0005515: protein binding	3.65E-02
80	GO:0005102: receptor binding	3.72E-02
81	GO:0018024: histone-lysine N-methyltransferase activity	3.72E-02
82	GO:0004672: protein kinase activity	3.86E-02
83	GO:0003779: actin binding	3.90E-02
84	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.15E-02
85	GO:0003713: transcription coactivator activity	4.15E-02
86	GO:0008026: ATP-dependent helicase activity	4.26E-02
87	GO:0050662: coenzyme binding	4.37E-02
88	GO:0019901: protein kinase binding	4.59E-02
89	GO:0048038: quinone binding	4.81E-02
90	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.81E-02