GO Enrichment Analysis of Co-expressed Genes with
AT4G00340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 4 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 5 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 6 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 7 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 8 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
| 9 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 10 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 11 | GO:0015843: methylammonium transport | 0.00E+00 |
| 12 | GO:0010480: microsporocyte differentiation | 2.48E-04 |
| 13 | GO:0006264: mitochondrial DNA replication | 2.48E-04 |
| 14 | GO:0033259: plastid DNA replication | 2.48E-04 |
| 15 | GO:0000373: Group II intron splicing | 3.41E-04 |
| 16 | GO:0009638: phototropism | 4.05E-04 |
| 17 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.47E-04 |
| 18 | GO:0015804: neutral amino acid transport | 5.49E-04 |
| 19 | GO:0009786: regulation of asymmetric cell division | 5.49E-04 |
| 20 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.73E-04 |
| 21 | GO:0051604: protein maturation | 8.92E-04 |
| 22 | GO:0090351: seedling development | 8.92E-04 |
| 23 | GO:0016050: vesicle organization | 8.92E-04 |
| 24 | GO:0040008: regulation of growth | 8.97E-04 |
| 25 | GO:0005992: trehalose biosynthetic process | 1.09E-03 |
| 26 | GO:0007166: cell surface receptor signaling pathway | 1.17E-03 |
| 27 | GO:0051639: actin filament network formation | 1.27E-03 |
| 28 | GO:0044211: CTP salvage | 1.27E-03 |
| 29 | GO:0019048: modulation by virus of host morphology or physiology | 1.27E-03 |
| 30 | GO:0031048: chromatin silencing by small RNA | 1.27E-03 |
| 31 | GO:0048645: animal organ formation | 1.27E-03 |
| 32 | GO:0015696: ammonium transport | 1.27E-03 |
| 33 | GO:0046739: transport of virus in multicellular host | 1.27E-03 |
| 34 | GO:2000904: regulation of starch metabolic process | 1.27E-03 |
| 35 | GO:0009067: aspartate family amino acid biosynthetic process | 1.27E-03 |
| 36 | GO:0051513: regulation of monopolar cell growth | 1.27E-03 |
| 37 | GO:0007231: osmosensory signaling pathway | 1.27E-03 |
| 38 | GO:0051764: actin crosslink formation | 1.70E-03 |
| 39 | GO:0072488: ammonium transmembrane transport | 1.70E-03 |
| 40 | GO:0006552: leucine catabolic process | 1.70E-03 |
| 41 | GO:0051567: histone H3-K9 methylation | 1.70E-03 |
| 42 | GO:0044206: UMP salvage | 1.70E-03 |
| 43 | GO:0033500: carbohydrate homeostasis | 1.70E-03 |
| 44 | GO:0046656: folic acid biosynthetic process | 1.70E-03 |
| 45 | GO:0009165: nucleotide biosynthetic process | 1.70E-03 |
| 46 | GO:0016310: phosphorylation | 2.11E-03 |
| 47 | GO:0006544: glycine metabolic process | 2.17E-03 |
| 48 | GO:0016131: brassinosteroid metabolic process | 2.17E-03 |
| 49 | GO:1902183: regulation of shoot apical meristem development | 2.17E-03 |
| 50 | GO:0006468: protein phosphorylation | 2.26E-03 |
| 51 | GO:0009646: response to absence of light | 2.31E-03 |
| 52 | GO:0006206: pyrimidine nucleobase metabolic process | 2.67E-03 |
| 53 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.67E-03 |
| 54 | GO:0009228: thiamine biosynthetic process | 2.67E-03 |
| 55 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.67E-03 |
| 56 | GO:0006139: nucleobase-containing compound metabolic process | 2.67E-03 |
| 57 | GO:0016458: gene silencing | 2.67E-03 |
| 58 | GO:0006563: L-serine metabolic process | 2.67E-03 |
| 59 | GO:0010405: arabinogalactan protein metabolic process | 2.67E-03 |
| 60 | GO:0032502: developmental process | 2.82E-03 |
| 61 | GO:0046654: tetrahydrofolate biosynthetic process | 3.21E-03 |
| 62 | GO:0030488: tRNA methylation | 3.21E-03 |
| 63 | GO:0009088: threonine biosynthetic process | 3.21E-03 |
| 64 | GO:0051607: defense response to virus | 3.60E-03 |
| 65 | GO:0048437: floral organ development | 3.79E-03 |
| 66 | GO:0009396: folic acid-containing compound biosynthetic process | 3.79E-03 |
| 67 | GO:0010444: guard mother cell differentiation | 3.79E-03 |
| 68 | GO:0022904: respiratory electron transport chain | 3.79E-03 |
| 69 | GO:0009610: response to symbiotic fungus | 3.79E-03 |
| 70 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 4.39E-03 |
| 71 | GO:0006402: mRNA catabolic process | 4.39E-03 |
| 72 | GO:0010411: xyloglucan metabolic process | 4.49E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 5.03E-03 |
| 74 | GO:0009827: plant-type cell wall modification | 5.03E-03 |
| 75 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.03E-03 |
| 76 | GO:0010052: guard cell differentiation | 5.03E-03 |
| 77 | GO:0032544: plastid translation | 5.03E-03 |
| 78 | GO:0000160: phosphorelay signal transduction system | 5.22E-03 |
| 79 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.70E-03 |
| 80 | GO:2000024: regulation of leaf development | 5.70E-03 |
| 81 | GO:0000902: cell morphogenesis | 5.70E-03 |
| 82 | GO:0035999: tetrahydrofolate interconversion | 6.40E-03 |
| 83 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 6.40E-03 |
| 84 | GO:0031425: chloroplast RNA processing | 6.40E-03 |
| 85 | GO:0009299: mRNA transcription | 7.12E-03 |
| 86 | GO:0006535: cysteine biosynthetic process from serine | 7.12E-03 |
| 87 | GO:0030422: production of siRNA involved in RNA interference | 7.12E-03 |
| 88 | GO:0048829: root cap development | 7.12E-03 |
| 89 | GO:0009641: shade avoidance | 7.12E-03 |
| 90 | GO:0006897: endocytosis | 7.49E-03 |
| 91 | GO:0006816: calcium ion transport | 7.88E-03 |
| 92 | GO:0009773: photosynthetic electron transport in photosystem I | 7.88E-03 |
| 93 | GO:0006415: translational termination | 7.88E-03 |
| 94 | GO:0048229: gametophyte development | 7.88E-03 |
| 95 | GO:0042546: cell wall biogenesis | 8.46E-03 |
| 96 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.66E-03 |
| 97 | GO:0045037: protein import into chloroplast stroma | 8.66E-03 |
| 98 | GO:0009785: blue light signaling pathway | 9.47E-03 |
| 99 | GO:0010628: positive regulation of gene expression | 9.47E-03 |
| 100 | GO:0006006: glucose metabolic process | 9.47E-03 |
| 101 | GO:0050826: response to freezing | 9.47E-03 |
| 102 | GO:0010075: regulation of meristem growth | 9.47E-03 |
| 103 | GO:0009725: response to hormone | 9.47E-03 |
| 104 | GO:0009767: photosynthetic electron transport chain | 9.47E-03 |
| 105 | GO:0009735: response to cytokinin | 9.73E-03 |
| 106 | GO:0009934: regulation of meristem structural organization | 1.03E-02 |
| 107 | GO:0009736: cytokinin-activated signaling pathway | 1.10E-02 |
| 108 | GO:0070588: calcium ion transmembrane transport | 1.12E-02 |
| 109 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.14E-02 |
| 110 | GO:0006071: glycerol metabolic process | 1.21E-02 |
| 111 | GO:0019344: cysteine biosynthetic process | 1.30E-02 |
| 112 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.30E-02 |
| 113 | GO:0046777: protein autophosphorylation | 1.30E-02 |
| 114 | GO:0051017: actin filament bundle assembly | 1.30E-02 |
| 115 | GO:0048367: shoot system development | 1.34E-02 |
| 116 | GO:0006825: copper ion transport | 1.39E-02 |
| 117 | GO:0006306: DNA methylation | 1.49E-02 |
| 118 | GO:0003333: amino acid transmembrane transport | 1.49E-02 |
| 119 | GO:0006730: one-carbon metabolic process | 1.59E-02 |
| 120 | GO:0009742: brassinosteroid mediated signaling pathway | 1.66E-02 |
| 121 | GO:0010082: regulation of root meristem growth | 1.69E-02 |
| 122 | GO:0048653: anther development | 2.01E-02 |
| 123 | GO:0042335: cuticle development | 2.01E-02 |
| 124 | GO:0006342: chromatin silencing | 2.12E-02 |
| 125 | GO:0007018: microtubule-based movement | 2.23E-02 |
| 126 | GO:0008654: phospholipid biosynthetic process | 2.34E-02 |
| 127 | GO:0009851: auxin biosynthetic process | 2.34E-02 |
| 128 | GO:0000302: response to reactive oxygen species | 2.46E-02 |
| 129 | GO:0016132: brassinosteroid biosynthetic process | 2.46E-02 |
| 130 | GO:0007623: circadian rhythm | 2.71E-02 |
| 131 | GO:0010027: thylakoid membrane organization | 3.19E-02 |
| 132 | GO:0009816: defense response to bacterium, incompatible interaction | 3.32E-02 |
| 133 | GO:0006974: cellular response to DNA damage stimulus | 3.46E-02 |
| 134 | GO:0007165: signal transduction | 3.49E-02 |
| 135 | GO:0009733: response to auxin | 3.77E-02 |
| 136 | GO:0009813: flavonoid biosynthetic process | 4.00E-02 |
| 137 | GO:0010311: lateral root formation | 4.00E-02 |
| 138 | GO:0009658: chloroplast organization | 4.19E-02 |
| 139 | GO:0006865: amino acid transport | 4.42E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 2 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 3 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 4 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 5 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 6 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 7 | GO:0016301: kinase activity | 5.00E-05 |
| 8 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.35E-04 |
| 9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.48E-04 |
| 10 | GO:0004156: dihydropteroate synthase activity | 2.48E-04 |
| 11 | GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | 2.48E-04 |
| 12 | GO:0004008: copper-exporting ATPase activity | 2.48E-04 |
| 13 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.48E-04 |
| 14 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.48E-04 |
| 15 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 2.48E-04 |
| 16 | GO:0004805: trehalose-phosphatase activity | 4.74E-04 |
| 17 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.49E-04 |
| 18 | GO:0015929: hexosaminidase activity | 5.49E-04 |
| 19 | GO:0004563: beta-N-acetylhexosaminidase activity | 5.49E-04 |
| 20 | GO:0015172: acidic amino acid transmembrane transporter activity | 5.49E-04 |
| 21 | GO:0050017: L-3-cyanoalanine synthase activity | 5.49E-04 |
| 22 | GO:0043425: bHLH transcription factor binding | 5.49E-04 |
| 23 | GO:0004674: protein serine/threonine kinase activity | 5.98E-04 |
| 24 | GO:0070330: aromatase activity | 8.92E-04 |
| 25 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 8.92E-04 |
| 26 | GO:0070180: large ribosomal subunit rRNA binding | 8.92E-04 |
| 27 | GO:0004072: aspartate kinase activity | 1.27E-03 |
| 28 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.27E-03 |
| 29 | GO:0035197: siRNA binding | 1.27E-03 |
| 30 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.70E-03 |
| 31 | GO:0008409: 5'-3' exonuclease activity | 1.70E-03 |
| 32 | GO:0019199: transmembrane receptor protein kinase activity | 1.70E-03 |
| 33 | GO:0004845: uracil phosphoribosyltransferase activity | 1.70E-03 |
| 34 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.17E-03 |
| 35 | GO:0004372: glycine hydroxymethyltransferase activity | 2.17E-03 |
| 36 | GO:0018685: alkane 1-monooxygenase activity | 2.17E-03 |
| 37 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.64E-03 |
| 38 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.67E-03 |
| 39 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.67E-03 |
| 40 | GO:0008519: ammonium transmembrane transporter activity | 2.67E-03 |
| 41 | GO:0000156: phosphorelay response regulator activity | 3.01E-03 |
| 42 | GO:0004124: cysteine synthase activity | 3.21E-03 |
| 43 | GO:0008195: phosphatidate phosphatase activity | 3.21E-03 |
| 44 | GO:0004849: uridine kinase activity | 3.21E-03 |
| 45 | GO:0003730: mRNA 3'-UTR binding | 3.21E-03 |
| 46 | GO:0004656: procollagen-proline 4-dioxygenase activity | 3.21E-03 |
| 47 | GO:0016597: amino acid binding | 3.60E-03 |
| 48 | GO:0003872: 6-phosphofructokinase activity | 3.79E-03 |
| 49 | GO:0005524: ATP binding | 3.92E-03 |
| 50 | GO:0030170: pyridoxal phosphate binding | 3.95E-03 |
| 51 | GO:0103075: indole-3-pyruvate monooxygenase activity | 4.39E-03 |
| 52 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 4.49E-03 |
| 53 | GO:0005375: copper ion transmembrane transporter activity | 5.03E-03 |
| 54 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.70E-03 |
| 55 | GO:0003747: translation release factor activity | 5.70E-03 |
| 56 | GO:0004713: protein tyrosine kinase activity | 7.12E-03 |
| 57 | GO:0050661: NADP binding | 7.18E-03 |
| 58 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 7.88E-03 |
| 59 | GO:0004185: serine-type carboxypeptidase activity | 8.13E-03 |
| 60 | GO:0004521: endoribonuclease activity | 8.66E-03 |
| 61 | GO:0009982: pseudouridine synthase activity | 9.47E-03 |
| 62 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 9.47E-03 |
| 63 | GO:0004089: carbonate dehydratase activity | 9.47E-03 |
| 64 | GO:0005262: calcium channel activity | 9.47E-03 |
| 65 | GO:0003887: DNA-directed DNA polymerase activity | 1.21E-02 |
| 66 | GO:0003777: microtubule motor activity | 1.22E-02 |
| 67 | GO:0031418: L-ascorbic acid binding | 1.30E-02 |
| 68 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.39E-02 |
| 69 | GO:0035251: UDP-glucosyltransferase activity | 1.49E-02 |
| 70 | GO:0004176: ATP-dependent peptidase activity | 1.49E-02 |
| 71 | GO:0033612: receptor serine/threonine kinase binding | 1.49E-02 |
| 72 | GO:0042803: protein homodimerization activity | 1.59E-02 |
| 73 | GO:0008514: organic anion transmembrane transporter activity | 1.79E-02 |
| 74 | GO:0004499: N,N-dimethylaniline monooxygenase activity | 1.79E-02 |
| 75 | GO:0003727: single-stranded RNA binding | 1.79E-02 |
| 76 | GO:0004672: protein kinase activity | 1.94E-02 |
| 77 | GO:0009055: electron carrier activity | 2.14E-02 |
| 78 | GO:0004252: serine-type endopeptidase activity | 2.18E-02 |
| 79 | GO:0050662: coenzyme binding | 2.23E-02 |
| 80 | GO:0051015: actin filament binding | 2.70E-02 |
| 81 | GO:0008483: transaminase activity | 2.94E-02 |
| 82 | GO:0008236: serine-type peptidase activity | 3.72E-02 |
| 83 | GO:0015238: drug transmembrane transporter activity | 4.00E-02 |
| 84 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.28E-02 |
| 85 | GO:0003746: translation elongation factor activity | 4.56E-02 |
| 86 | GO:0003993: acid phosphatase activity | 4.71E-02 |
| 87 | GO:0050660: flavin adenine dinucleotide binding | 4.83E-02 |
| 88 | GO:0046983: protein dimerization activity | 4.83E-02 |