Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G62750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017038: protein import0.00E+00
2GO:0046460: neutral lipid biosynthetic process0.00E+00
3GO:0031054: pre-miRNA processing0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0051290: protein heterotetramerization0.00E+00
13GO:0070125: mitochondrial translational elongation0.00E+00
14GO:0002184: cytoplasmic translational termination0.00E+00
15GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
16GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
17GO:0009658: chloroplast organization2.51E-07
18GO:0009793: embryo development ending in seed dormancy9.68E-05
19GO:0045038: protein import into chloroplast thylakoid membrane1.25E-04
20GO:0009443: pyridoxal 5'-phosphate salvage3.60E-04
21GO:0000967: rRNA 5'-end processing3.60E-04
22GO:0000012: single strand break repair3.60E-04
23GO:0043266: regulation of potassium ion transport3.60E-04
24GO:0006659: phosphatidylserine biosynthetic process3.60E-04
25GO:0042547: cell wall modification involved in multidimensional cell growth3.60E-04
26GO:0042371: vitamin K biosynthetic process3.60E-04
27GO:0043087: regulation of GTPase activity3.60E-04
28GO:2000021: regulation of ion homeostasis3.60E-04
29GO:1902458: positive regulation of stomatal opening3.60E-04
30GO:0010028: xanthophyll cycle3.60E-04
31GO:0000023: maltose metabolic process3.60E-04
32GO:0006419: alanyl-tRNA aminoacylation3.60E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.60E-04
34GO:0000476: maturation of 4.5S rRNA3.60E-04
35GO:0000105: histidine biosynthetic process3.97E-04
36GO:0032544: plastid translation4.86E-04
37GO:0071482: cellular response to light stimulus4.86E-04
38GO:0009629: response to gravity7.83E-04
39GO:1900871: chloroplast mRNA modification7.83E-04
40GO:0006423: cysteinyl-tRNA aminoacylation7.83E-04
41GO:0006435: threonyl-tRNA aminoacylation7.83E-04
42GO:0007154: cell communication7.83E-04
43GO:0018026: peptidyl-lysine monomethylation7.83E-04
44GO:0042325: regulation of phosphorylation7.83E-04
45GO:0009220: pyrimidine ribonucleotide biosynthetic process7.83E-04
46GO:0042550: photosystem I stabilization7.83E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process7.83E-04
48GO:0034470: ncRNA processing7.83E-04
49GO:0006782: protoporphyrinogen IX biosynthetic process8.01E-04
50GO:0045036: protein targeting to chloroplast8.01E-04
51GO:0010027: thylakoid membrane organization8.76E-04
52GO:0006352: DNA-templated transcription, initiation9.22E-04
53GO:0045037: protein import into chloroplast stroma1.05E-03
54GO:0015995: chlorophyll biosynthetic process1.07E-03
55GO:0010589: leaf proximal/distal pattern formation1.27E-03
56GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.27E-03
57GO:0051604: protein maturation1.27E-03
58GO:0015940: pantothenate biosynthetic process1.27E-03
59GO:0045493: xylan catabolic process1.27E-03
60GO:0033591: response to L-ascorbic acid1.27E-03
61GO:0090351: seedling development1.50E-03
62GO:0009790: embryo development1.70E-03
63GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.83E-03
64GO:0006986: response to unfolded protein1.83E-03
65GO:2001141: regulation of RNA biosynthetic process1.83E-03
66GO:0009102: biotin biosynthetic process1.83E-03
67GO:0051085: chaperone mediated protein folding requiring cofactor1.83E-03
68GO:0061077: chaperone-mediated protein folding2.25E-03
69GO:0006021: inositol biosynthetic process2.45E-03
70GO:0071483: cellular response to blue light2.45E-03
71GO:0044205: 'de novo' UMP biosynthetic process2.45E-03
72GO:0010109: regulation of photosynthesis2.45E-03
73GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.45E-03
74GO:0006730: one-carbon metabolic process2.46E-03
75GO:0010236: plastoquinone biosynthetic process3.14E-03
76GO:0016123: xanthophyll biosynthetic process3.14E-03
77GO:0016554: cytidine to uridine editing3.88E-03
78GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.88E-03
79GO:0010190: cytochrome b6f complex assembly3.88E-03
80GO:0032973: amino acid export3.88E-03
81GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.88E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.88E-03
83GO:0042372: phylloquinone biosynthetic process4.67E-03
84GO:0042026: protein refolding4.67E-03
85GO:0034389: lipid particle organization4.67E-03
86GO:0006458: 'de novo' protein folding4.67E-03
87GO:1901259: chloroplast rRNA processing4.67E-03
88GO:0030488: tRNA methylation4.67E-03
89GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.52E-03
90GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.52E-03
91GO:0006400: tRNA modification5.52E-03
92GO:0015693: magnesium ion transport5.52E-03
93GO:0035196: production of miRNAs involved in gene silencing by miRNA5.52E-03
94GO:0009772: photosynthetic electron transport in photosystem II5.52E-03
95GO:0043090: amino acid import5.52E-03
96GO:0009409: response to cold5.62E-03
97GO:0006353: DNA-templated transcription, termination6.41E-03
98GO:0006605: protein targeting6.41E-03
99GO:0019375: galactolipid biosynthetic process6.41E-03
100GO:0006875: cellular metal ion homeostasis6.41E-03
101GO:2000070: regulation of response to water deprivation6.41E-03
102GO:0031540: regulation of anthocyanin biosynthetic process6.41E-03
103GO:0009231: riboflavin biosynthetic process6.41E-03
104GO:0005975: carbohydrate metabolic process7.19E-03
105GO:0022900: electron transport chain7.36E-03
106GO:0010206: photosystem II repair8.35E-03
107GO:0080144: amino acid homeostasis8.35E-03
108GO:0019432: triglyceride biosynthetic process8.35E-03
109GO:0006783: heme biosynthetic process8.35E-03
110GO:0098656: anion transmembrane transport8.35E-03
111GO:1900865: chloroplast RNA modification9.38E-03
112GO:0031425: chloroplast RNA processing9.38E-03
113GO:0043067: regulation of programmed cell death9.38E-03
114GO:0006779: porphyrin-containing compound biosynthetic process9.38E-03
115GO:0010267: production of ta-siRNAs involved in RNA interference9.38E-03
116GO:0006949: syncytium formation1.05E-02
117GO:0045087: innate immune response1.09E-02
118GO:0019684: photosynthesis, light reaction1.16E-02
119GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-02
120GO:0006415: translational termination1.16E-02
121GO:1903507: negative regulation of nucleic acid-templated transcription1.16E-02
122GO:0018119: peptidyl-cysteine S-nitrosylation1.16E-02
123GO:0009684: indoleacetic acid biosynthetic process1.16E-02
124GO:0010015: root morphogenesis1.16E-02
125GO:0006839: mitochondrial transport1.25E-02
126GO:0005983: starch catabolic process1.28E-02
127GO:2000012: regulation of auxin polar transport1.40E-02
128GO:0006108: malate metabolic process1.40E-02
129GO:0010229: inflorescence development1.40E-02
130GO:0010114: response to red light1.41E-02
131GO:0010207: photosystem II assembly1.52E-02
132GO:0006302: double-strand break repair1.52E-02
133GO:0048467: gynoecium development1.52E-02
134GO:0019853: L-ascorbic acid biosynthetic process1.65E-02
135GO:0042023: DNA endoreduplication1.78E-02
136GO:0006071: glycerol metabolic process1.78E-02
137GO:0000162: tryptophan biosynthetic process1.78E-02
138GO:0009116: nucleoside metabolic process1.92E-02
139GO:0016575: histone deacetylation2.06E-02
140GO:0046686: response to cadmium ion2.07E-02
141GO:0031408: oxylipin biosynthetic process2.20E-02
142GO:0016114: terpenoid biosynthetic process2.20E-02
143GO:0048511: rhythmic process2.20E-02
144GO:2000022: regulation of jasmonic acid mediated signaling pathway2.35E-02
145GO:0007005: mitochondrion organization2.35E-02
146GO:0031348: negative regulation of defense response2.35E-02
147GO:0019748: secondary metabolic process2.35E-02
148GO:0009814: defense response, incompatible interaction2.35E-02
149GO:0006012: galactose metabolic process2.50E-02
150GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.50E-02
151GO:0009306: protein secretion2.65E-02
152GO:0016117: carotenoid biosynthetic process2.81E-02
153GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.81E-02
154GO:0015979: photosynthesis2.83E-02
155GO:0006606: protein import into nucleus2.97E-02
156GO:0010305: leaf vascular tissue pattern formation3.13E-02
157GO:0010197: polar nucleus fusion3.13E-02
158GO:0042752: regulation of circadian rhythm3.30E-02
159GO:0009646: response to absence of light3.30E-02
160GO:0009791: post-embryonic development3.47E-02
161GO:0008654: phospholipid biosynthetic process3.47E-02
162GO:0016032: viral process3.81E-02
163GO:0009630: gravitropism3.81E-02
164GO:0030163: protein catabolic process3.99E-02
165GO:0010090: trichome morphogenesis3.99E-02
166GO:1901657: glycosyl compound metabolic process3.99E-02
167GO:0006397: mRNA processing4.09E-02
168GO:0010252: auxin homeostasis4.17E-02
169GO:0009828: plant-type cell wall loosening4.17E-02
170GO:0006633: fatty acid biosynthetic process4.26E-02
171GO:0006413: translational initiation4.36E-02
172GO:0000910: cytokinesis4.54E-02
173GO:0007623: circadian rhythm4.68E-02
174GO:0009911: positive regulation of flower development4.72E-02
175GO:0016126: sterol biosynthetic process4.72E-02
176GO:0006810: transport4.84E-02
177GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.91E-02
RankGO TermAdjusted P value
1GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
2GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
3GO:0043864: indoleacetamide hydrolase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0051721: protein phosphatase 2A binding0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
14GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
15GO:0005048: signal sequence binding0.00E+00
16GO:0004076: biotin synthase activity0.00E+00
17GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
18GO:0010349: L-galactose dehydrogenase activity0.00E+00
19GO:0005363: maltose transmembrane transporter activity0.00E+00
20GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
21GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
22GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.84E-06
23GO:0016851: magnesium chelatase activity4.51E-05
24GO:0001053: plastid sigma factor activity8.00E-05
25GO:0016987: sigma factor activity8.00E-05
26GO:0004040: amidase activity1.25E-04
27GO:0005525: GTP binding1.50E-04
28GO:0005528: FK506 binding1.62E-04
29GO:0004856: xylulokinase activity3.60E-04
30GO:0004813: alanine-tRNA ligase activity3.60E-04
31GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity3.60E-04
32GO:0004853: uroporphyrinogen decarboxylase activity3.60E-04
33GO:0015088: copper uptake transmembrane transporter activity3.60E-04
34GO:0046481: digalactosyldiacylglycerol synthase activity3.60E-04
35GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.60E-04
36GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.60E-04
37GO:0046480: galactolipid galactosyltransferase activity3.60E-04
38GO:0005227: calcium activated cation channel activity3.60E-04
39GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity3.60E-04
40GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.60E-04
41GO:0004033: aldo-keto reductase (NADP) activity3.97E-04
42GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.83E-04
43GO:0004829: threonine-tRNA ligase activity7.83E-04
44GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.83E-04
45GO:0004512: inositol-3-phosphate synthase activity7.83E-04
46GO:0010291: carotene beta-ring hydroxylase activity7.83E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity7.83E-04
48GO:0004817: cysteine-tRNA ligase activity7.83E-04
49GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.83E-04
50GO:0003913: DNA photolyase activity1.27E-03
51GO:0004557: alpha-galactosidase activity1.27E-03
52GO:0070402: NADPH binding1.27E-03
53GO:0052692: raffinose alpha-galactosidase activity1.27E-03
54GO:0015462: ATPase-coupled protein transmembrane transporter activity1.27E-03
55GO:0035250: UDP-galactosyltransferase activity1.83E-03
56GO:0048487: beta-tubulin binding1.83E-03
57GO:0016149: translation release factor activity, codon specific1.83E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.83E-03
59GO:0043023: ribosomal large subunit binding1.83E-03
60GO:0035198: miRNA binding1.83E-03
61GO:0019201: nucleotide kinase activity1.83E-03
62GO:0004176: ATP-dependent peptidase activity2.25E-03
63GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.45E-03
64GO:0009044: xylan 1,4-beta-xylosidase activity2.45E-03
65GO:0046556: alpha-L-arabinofuranosidase activity2.45E-03
66GO:0004659: prenyltransferase activity2.45E-03
67GO:0016279: protein-lysine N-methyltransferase activity2.45E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity2.45E-03
69GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.77E-03
70GO:0003924: GTPase activity2.80E-03
71GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.14E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.14E-03
73GO:0042578: phosphoric ester hydrolase activity3.88E-03
74GO:0004017: adenylate kinase activity4.67E-03
75GO:0016832: aldehyde-lyase activity4.67E-03
76GO:0030060: L-malate dehydrogenase activity4.67E-03
77GO:0004144: diacylglycerol O-acyltransferase activity4.67E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.67E-03
79GO:0051082: unfolded protein binding5.21E-03
80GO:0009881: photoreceptor activity5.52E-03
81GO:0008237: metallopeptidase activity5.86E-03
82GO:0043022: ribosome binding6.41E-03
83GO:0008312: 7S RNA binding6.41E-03
84GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.36E-03
85GO:0008236: serine-type peptidase activity8.18E-03
86GO:0003747: translation release factor activity8.35E-03
87GO:0005096: GTPase activator activity9.04E-03
88GO:0005381: iron ion transmembrane transporter activity9.38E-03
89GO:0016614: oxidoreductase activity, acting on CH-OH group of donors9.96E-03
90GO:0003746: translation elongation factor activity1.09E-02
91GO:0044183: protein binding involved in protein folding1.16E-02
92GO:0047372: acylglycerol lipase activity1.16E-02
93GO:0000049: tRNA binding1.28E-02
94GO:0003725: double-stranded RNA binding1.40E-02
95GO:0005315: inorganic phosphate transmembrane transporter activity1.40E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.40E-02
97GO:0031072: heat shock protein binding1.40E-02
98GO:0019888: protein phosphatase regulator activity1.40E-02
99GO:0008266: poly(U) RNA binding1.52E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding1.53E-02
101GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.78E-02
102GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.78E-02
103GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.78E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.91E-02
105GO:0003714: transcription corepressor activity1.92E-02
106GO:0051536: iron-sulfur cluster binding1.92E-02
107GO:0004407: histone deacetylase activity1.92E-02
108GO:0051087: chaperone binding2.06E-02
109GO:0003723: RNA binding2.45E-02
110GO:0030570: pectate lyase activity2.50E-02
111GO:0008514: organic anion transmembrane transporter activity2.65E-02
112GO:0004527: exonuclease activity3.13E-02
113GO:0008536: Ran GTPase binding3.13E-02
114GO:0008080: N-acetyltransferase activity3.13E-02
115GO:0008483: transaminase activity4.35E-02
116GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.36E-02
117GO:0016597: amino acid binding4.54E-02
118GO:0003729: mRNA binding4.95E-02
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Gene type



Gene DE type