Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G62390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0009606: tropism0.00E+00
5GO:1901698: response to nitrogen compound0.00E+00
6GO:1903224: regulation of endodermal cell differentiation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0046620: regulation of organ growth1.64E-08
13GO:0009734: auxin-activated signaling pathway4.22E-08
14GO:0009733: response to auxin1.27E-07
15GO:0009926: auxin polar transport3.07E-06
16GO:0010569: regulation of double-strand break repair via homologous recombination1.95E-05
17GO:0007389: pattern specification process7.96E-05
18GO:0051513: regulation of monopolar cell growth1.33E-04
19GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.63E-04
20GO:2000038: regulation of stomatal complex development2.26E-04
21GO:0046656: folic acid biosynthetic process2.26E-04
22GO:0032876: negative regulation of DNA endoreduplication3.40E-04
23GO:0010252: auxin homeostasis3.53E-04
24GO:0009658: chloroplast organization3.72E-04
25GO:0042793: transcription from plastid promoter4.74E-04
26GO:0046654: tetrahydrofolate biosynthetic process6.28E-04
27GO:0000066: mitochondrial ornithine transport6.76E-04
28GO:0034757: negative regulation of iron ion transport6.76E-04
29GO:0042659: regulation of cell fate specification6.76E-04
30GO:1901537: positive regulation of DNA demethylation6.76E-04
31GO:0090558: plant epidermis development6.76E-04
32GO:0010480: microsporocyte differentiation6.76E-04
33GO:0035987: endodermal cell differentiation6.76E-04
34GO:0043609: regulation of carbon utilization6.76E-04
35GO:0006436: tryptophanyl-tRNA aminoacylation6.76E-04
36GO:0000160: phosphorelay signal transduction system7.68E-04
37GO:0000373: Group II intron splicing1.45E-03
38GO:0006529: asparagine biosynthetic process1.46E-03
39GO:2000123: positive regulation of stomatal complex development1.46E-03
40GO:0010254: nectary development1.46E-03
41GO:0070981: L-asparagine biosynthetic process1.46E-03
42GO:1902326: positive regulation of chlorophyll biosynthetic process1.46E-03
43GO:0010271: regulation of chlorophyll catabolic process1.46E-03
44GO:0018026: peptidyl-lysine monomethylation1.46E-03
45GO:0010434: bract formation1.46E-03
46GO:2000039: regulation of trichome morphogenesis1.46E-03
47GO:0071497: cellular response to freezing1.46E-03
48GO:1900033: negative regulation of trichome patterning1.46E-03
49GO:1904143: positive regulation of carotenoid biosynthetic process1.46E-03
50GO:0080009: mRNA methylation1.46E-03
51GO:0006423: cysteinyl-tRNA aminoacylation1.46E-03
52GO:0009786: regulation of asymmetric cell division1.46E-03
53GO:0048439: flower morphogenesis1.46E-03
54GO:0009416: response to light stimulus1.71E-03
55GO:0040008: regulation of growth2.22E-03
56GO:0009736: cytokinin-activated signaling pathway2.38E-03
57GO:0009954: proximal/distal pattern formation2.40E-03
58GO:0090708: specification of plant organ axis polarity2.40E-03
59GO:0080117: secondary growth2.40E-03
60GO:0006000: fructose metabolic process2.40E-03
61GO:0031145: anaphase-promoting complex-dependent catabolic process2.40E-03
62GO:0001578: microtubule bundle formation2.40E-03
63GO:0006760: folic acid-containing compound metabolic process2.40E-03
64GO:0071705: nitrogen compound transport2.40E-03
65GO:0010582: floral meristem determinacy2.67E-03
66GO:0006357: regulation of transcription from RNA polymerase II promoter2.68E-03
67GO:0009739: response to gibberellin2.94E-03
68GO:0009767: photosynthetic electron transport chain3.04E-03
69GO:2000012: regulation of auxin polar transport3.04E-03
70GO:1902476: chloride transmembrane transport3.49E-03
71GO:0007231: osmosensory signaling pathway3.49E-03
72GO:0030071: regulation of mitotic metaphase/anaphase transition3.49E-03
73GO:0051639: actin filament network formation3.49E-03
74GO:0009800: cinnamic acid biosynthetic process3.49E-03
75GO:0044211: CTP salvage3.49E-03
76GO:0019048: modulation by virus of host morphology or physiology3.49E-03
77GO:0015696: ammonium transport3.49E-03
78GO:0046739: transport of virus in multicellular host3.49E-03
79GO:2000904: regulation of starch metabolic process3.49E-03
80GO:0051289: protein homotetramerization3.49E-03
81GO:0043572: plastid fission3.49E-03
82GO:0031048: chromatin silencing by small RNA3.49E-03
83GO:0005975: carbohydrate metabolic process4.19E-03
84GO:0030154: cell differentiation4.39E-03
85GO:0009751: response to salicylic acid4.60E-03
86GO:0048629: trichome patterning4.72E-03
87GO:0051764: actin crosslink formation4.72E-03
88GO:0051322: anaphase4.72E-03
89GO:0071249: cellular response to nitrate4.72E-03
90GO:0030104: water homeostasis4.72E-03
91GO:0033500: carbohydrate homeostasis4.72E-03
92GO:0072488: ammonium transmembrane transport4.72E-03
93GO:0022622: root system development4.72E-03
94GO:0044205: 'de novo' UMP biosynthetic process4.72E-03
95GO:0051567: histone H3-K9 methylation4.72E-03
96GO:0044206: UMP salvage4.72E-03
97GO:1901141: regulation of lignin biosynthetic process4.72E-03
98GO:0005992: trehalose biosynthetic process4.78E-03
99GO:0009944: polarity specification of adaxial/abaxial axis4.78E-03
100GO:0006418: tRNA aminoacylation for protein translation5.28E-03
101GO:0006306: DNA methylation5.81E-03
102GO:0016998: cell wall macromolecule catabolic process5.81E-03
103GO:1902183: regulation of shoot apical meristem development6.06E-03
104GO:0016123: xanthophyll biosynthetic process6.06E-03
105GO:0010438: cellular response to sulfur starvation6.06E-03
106GO:0010158: abaxial cell fate specification6.06E-03
107GO:0030308: negative regulation of cell growth6.06E-03
108GO:0010375: stomatal complex patterning6.06E-03
109GO:0006544: glycine metabolic process6.06E-03
110GO:0006839: mitochondrial transport6.56E-03
111GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.96E-03
112GO:0010082: regulation of root meristem growth6.96E-03
113GO:0009686: gibberellin biosynthetic process6.96E-03
114GO:0010405: arabinogalactan protein metabolic process7.53E-03
115GO:0006655: phosphatidylglycerol biosynthetic process7.53E-03
116GO:0048831: regulation of shoot system development7.53E-03
117GO:0010315: auxin efflux7.53E-03
118GO:0006559: L-phenylalanine catabolic process7.53E-03
119GO:0016458: gene silencing7.53E-03
120GO:0006206: pyrimidine nucleobase metabolic process7.53E-03
121GO:0018258: protein O-linked glycosylation via hydroxyproline7.53E-03
122GO:0006563: L-serine metabolic process7.53E-03
123GO:0080167: response to karrikin7.60E-03
124GO:0007275: multicellular organism development8.42E-03
125GO:0010087: phloem or xylem histogenesis8.89E-03
126GO:2000037: regulation of stomatal complex patterning9.11E-03
127GO:2000067: regulation of root morphogenesis9.11E-03
128GO:0071470: cellular response to osmotic stress9.11E-03
129GO:0010067: procambium histogenesis9.11E-03
130GO:0009942: longitudinal axis specification9.11E-03
131GO:0048509: regulation of meristem development9.11E-03
132GO:0030488: tRNA methylation9.11E-03
133GO:1901259: chloroplast rRNA processing9.11E-03
134GO:0071555: cell wall organization9.13E-03
135GO:0006342: chromatin silencing9.60E-03
136GO:0009741: response to brassinosteroid9.60E-03
137GO:0009958: positive gravitropism9.60E-03
138GO:0009646: response to absence of light1.03E-02
139GO:0032880: regulation of protein localization1.08E-02
140GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.08E-02
141GO:0009610: response to symbiotic fungus1.08E-02
142GO:0006955: immune response1.08E-02
143GO:0007050: cell cycle arrest1.08E-02
144GO:0006821: chloride transport1.08E-02
145GO:0010050: vegetative phase change1.08E-02
146GO:0048437: floral organ development1.08E-02
147GO:0030307: positive regulation of cell growth1.08E-02
148GO:0009396: folic acid-containing compound biosynthetic process1.08E-02
149GO:0010103: stomatal complex morphogenesis1.08E-02
150GO:0000105: histidine biosynthetic process1.26E-02
151GO:0010439: regulation of glucosinolate biosynthetic process1.26E-02
152GO:0001522: pseudouridine synthesis1.26E-02
153GO:0009850: auxin metabolic process1.26E-02
154GO:0009787: regulation of abscisic acid-activated signaling pathway1.26E-02
155GO:0032875: regulation of DNA endoreduplication1.26E-02
156GO:0030162: regulation of proteolysis1.26E-02
157GO:0042255: ribosome assembly1.26E-02
158GO:0048766: root hair initiation1.26E-02
159GO:0055075: potassium ion homeostasis1.26E-02
160GO:0032502: developmental process1.27E-02
161GO:0010583: response to cyclopentenone1.27E-02
162GO:0006468: protein phosphorylation1.30E-02
163GO:0006002: fructose 6-phosphate metabolic process1.45E-02
164GO:0009827: plant-type cell wall modification1.45E-02
165GO:0006526: arginine biosynthetic process1.45E-02
166GO:0010497: plasmodesmata-mediated intercellular transport1.45E-02
167GO:0009657: plastid organization1.45E-02
168GO:0009828: plant-type cell wall loosening1.45E-02
169GO:0048364: root development1.61E-02
170GO:0051607: defense response to virus1.63E-02
171GO:0009051: pentose-phosphate shunt, oxidative branch1.65E-02
172GO:2000024: regulation of leaf development1.65E-02
173GO:0000902: cell morphogenesis1.65E-02
174GO:0010027: thylakoid membrane organization1.73E-02
175GO:0009638: phototropism1.86E-02
176GO:0042761: very long-chain fatty acid biosynthetic process1.86E-02
177GO:0035999: tetrahydrofolate interconversion1.86E-02
178GO:2000280: regulation of root development1.86E-02
179GO:1900865: chloroplast RNA modification1.86E-02
180GO:0031425: chloroplast RNA processing1.86E-02
181GO:0009742: brassinosteroid mediated signaling pathway1.90E-02
182GO:0006949: syncytium formation2.07E-02
183GO:0006259: DNA metabolic process2.07E-02
184GO:0031627: telomeric loop formation2.07E-02
185GO:0006535: cysteine biosynthetic process from serine2.07E-02
186GO:0030422: production of siRNA involved in RNA interference2.07E-02
187GO:0048829: root cap development2.07E-02
188GO:0048481: plant ovule development2.26E-02
189GO:0009723: response to ethylene2.28E-02
190GO:0010015: root morphogenesis2.30E-02
191GO:0006816: calcium ion transport2.30E-02
192GO:0006265: DNA topological change2.30E-02
193GO:0009773: photosynthetic electron transport in photosystem I2.30E-02
194GO:0009682: induced systemic resistance2.30E-02
195GO:0048229: gametophyte development2.30E-02
196GO:0010311: lateral root formation2.38E-02
197GO:0008361: regulation of cell size2.53E-02
198GO:0015706: nitrate transport2.53E-02
199GO:0016024: CDP-diacylglycerol biosynthetic process2.53E-02
200GO:0045037: protein import into chloroplast stroma2.53E-02
201GO:0010075: regulation of meristem growth2.77E-02
202GO:0010628: positive regulation of gene expression2.77E-02
203GO:0006006: glucose metabolic process2.77E-02
204GO:0009785: blue light signaling pathway2.77E-02
205GO:0009691: cytokinin biosynthetic process2.77E-02
206GO:0009790: embryo development2.85E-02
207GO:0034599: cellular response to oxidative stress3.00E-02
208GO:0009934: regulation of meristem structural organization3.02E-02
209GO:0010207: photosystem II assembly3.02E-02
210GO:0006541: glutamine metabolic process3.02E-02
211GO:0010020: chloroplast fission3.02E-02
212GO:0010223: secondary shoot formation3.02E-02
213GO:0080188: RNA-directed DNA methylation3.28E-02
214GO:0010167: response to nitrate3.28E-02
215GO:0090351: seedling development3.28E-02
216GO:0070588: calcium ion transmembrane transport3.28E-02
217GO:0006071: glycerol metabolic process3.54E-02
218GO:0006833: water transport3.54E-02
219GO:0009833: plant-type primary cell wall biogenesis3.54E-02
220GO:0009451: RNA modification3.62E-02
221GO:0010114: response to red light3.70E-02
222GO:0019344: cysteine biosynthetic process3.81E-02
223GO:0080147: root hair cell development3.81E-02
224GO:0051017: actin filament bundle assembly3.81E-02
225GO:0008643: carbohydrate transport4.00E-02
226GO:0006825: copper ion transport4.09E-02
227GO:0051302: regulation of cell division4.09E-02
228GO:0009664: plant-type cell wall organization4.63E-02
229GO:0019748: secondary metabolic process4.67E-02
230GO:0031348: negative regulation of defense response4.67E-02
231GO:0006730: one-carbon metabolic process4.67E-02
232GO:0009753: response to jasmonic acid4.93E-02
233GO:0010227: floral organ abscission4.96E-02
234GO:0071215: cellular response to abscisic acid stimulus4.96E-02
235GO:0001944: vasculature development4.96E-02
236GO:0009625: response to insect4.96E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004056: argininosuccinate lyase activity0.00E+00
6GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.95E-05
7GO:0001872: (1->3)-beta-D-glucan binding1.33E-04
8GO:0009672: auxin:proton symporter activity1.38E-04
9GO:0010329: auxin efflux transmembrane transporter activity3.14E-04
10GO:0004400: histidinol-phosphate transaminase activity6.76E-04
11GO:0050139: nicotinate-N-glucosyltransferase activity6.76E-04
12GO:0051777: ent-kaurenoate oxidase activity6.76E-04
13GO:0042834: peptidoglycan binding6.76E-04
14GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity6.76E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.76E-04
16GO:0004156: dihydropteroate synthase activity6.76E-04
17GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.76E-04
18GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.76E-04
19GO:0005290: L-histidine transmembrane transporter activity6.76E-04
20GO:0004008: copper-exporting ATPase activity6.76E-04
21GO:0003867: 4-aminobutyrate transaminase activity6.76E-04
22GO:0004071: aspartate-ammonia ligase activity6.76E-04
23GO:0004830: tryptophan-tRNA ligase activity6.76E-04
24GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.76E-04
25GO:0052381: tRNA dimethylallyltransferase activity6.76E-04
26GO:0004650: polygalacturonase activity7.80E-04
27GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting9.10E-04
28GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.15E-03
29GO:0004674: protein serine/threonine kinase activity1.28E-03
30GO:0102083: 7,8-dihydromonapterin aldolase activity1.46E-03
31GO:0004817: cysteine-tRNA ligase activity1.46E-03
32GO:0004150: dihydroneopterin aldolase activity1.46E-03
33GO:0008805: carbon-monoxide oxygenase activity1.46E-03
34GO:0000064: L-ornithine transmembrane transporter activity1.46E-03
35GO:0015929: hexosaminidase activity1.46E-03
36GO:0004563: beta-N-acetylhexosaminidase activity1.46E-03
37GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.46E-03
38GO:0050017: L-3-cyanoalanine synthase activity1.46E-03
39GO:0009884: cytokinin receptor activity1.46E-03
40GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.46E-03
41GO:0004805: trehalose-phosphatase activity2.01E-03
42GO:0000156: phosphorelay response regulator activity2.14E-03
43GO:0016707: gibberellin 3-beta-dioxygenase activity2.40E-03
44GO:0017150: tRNA dihydrouridine synthase activity2.40E-03
45GO:0045548: phenylalanine ammonia-lyase activity2.40E-03
46GO:0005034: osmosensor activity2.40E-03
47GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.43E-03
48GO:0015189: L-lysine transmembrane transporter activity3.49E-03
49GO:0015181: arginine transmembrane transporter activity3.49E-03
50GO:0035197: siRNA binding3.49E-03
51GO:0004845: uracil phosphoribosyltransferase activity4.72E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity4.72E-03
53GO:0005253: anion channel activity4.72E-03
54GO:0019199: transmembrane receptor protein kinase activity4.72E-03
55GO:0046556: alpha-L-arabinofuranosidase activity4.72E-03
56GO:0016279: protein-lysine N-methyltransferase activity4.72E-03
57GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.54E-03
58GO:0016301: kinase activity5.99E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity6.06E-03
60GO:0004372: glycine hydroxymethyltransferase activity6.06E-03
61GO:0004523: RNA-DNA hybrid ribonuclease activity6.06E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor6.06E-03
63GO:0016829: lyase activity6.53E-03
64GO:0008519: ammonium transmembrane transporter activity7.53E-03
65GO:0005247: voltage-gated chloride channel activity7.53E-03
66GO:2001070: starch binding7.53E-03
67GO:0004605: phosphatidate cytidylyltransferase activity7.53E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity7.53E-03
69GO:0004812: aminoacyl-tRNA ligase activity8.22E-03
70GO:0004124: cysteine synthase activity9.11E-03
71GO:0008195: phosphatidate phosphatase activity9.11E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.11E-03
73GO:0004849: uridine kinase activity9.11E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity9.11E-03
75GO:0019900: kinase binding9.11E-03
76GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.25E-03
77GO:0004871: signal transducer activity1.13E-02
78GO:0004518: nuclease activity1.27E-02
79GO:0051015: actin filament binding1.36E-02
80GO:0016759: cellulose synthase activity1.45E-02
81GO:0008173: RNA methyltransferase activity1.45E-02
82GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.45E-02
83GO:0005375: copper ion transmembrane transporter activity1.45E-02
84GO:0008889: glycerophosphodiester phosphodiesterase activity1.65E-02
85GO:0030247: polysaccharide binding2.04E-02
86GO:0004673: protein histidine kinase activity2.07E-02
87GO:0044212: transcription regulatory region DNA binding2.28E-02
88GO:0005089: Rho guanyl-nucleotide exchange factor activity2.30E-02
89GO:0003691: double-stranded telomeric DNA binding2.30E-02
90GO:0004521: endoribonuclease activity2.53E-02
91GO:0043565: sequence-specific DNA binding2.61E-02
92GO:0031072: heat shock protein binding2.77E-02
93GO:0000155: phosphorelay sensor kinase activity2.77E-02
94GO:0005262: calcium channel activity2.77E-02
95GO:0009982: pseudouridine synthase activity2.77E-02
96GO:0003725: double-stranded RNA binding2.77E-02
97GO:0004022: alcohol dehydrogenase (NAD) activity2.77E-02
98GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.77E-02
99GO:0004089: carbonate dehydratase activity2.77E-02
100GO:0005215: transporter activity2.80E-02
101GO:0015144: carbohydrate transmembrane transporter activity2.94E-02
102GO:0005524: ATP binding3.00E-02
103GO:0008083: growth factor activity3.02E-02
104GO:0005351: sugar:proton symporter activity3.41E-02
105GO:0031418: L-ascorbic acid binding3.81E-02
106GO:0008134: transcription factor binding3.81E-02
107GO:0043621: protein self-association4.00E-02
108GO:0043424: protein histidine kinase binding4.09E-02
109GO:0005345: purine nucleobase transmembrane transporter activity4.09E-02
110GO:0008408: 3'-5' exonuclease activity4.37E-02
111GO:0035251: UDP-glucosyltransferase activity4.37E-02
112GO:0004176: ATP-dependent peptidase activity4.37E-02
113GO:0033612: receptor serine/threonine kinase binding4.37E-02
114GO:0004707: MAP kinase activity4.37E-02
115GO:0003964: RNA-directed DNA polymerase activity4.37E-02
116GO:0004672: protein kinase activity4.92E-02
117GO:0016760: cellulose synthase (UDP-forming) activity4.96E-02
118GO:0022891: substrate-specific transmembrane transporter activity4.96E-02
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Gene type



Gene DE type