GO Enrichment Analysis of Co-expressed Genes with
AT3G62300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 2 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 5 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 8 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 9 | GO:0080127: fruit septum development | 0.00E+00 |
| 10 | GO:0006430: lysyl-tRNA aminoacylation | 1.31E-04 |
| 11 | GO:0034970: histone H3-R2 methylation | 1.31E-04 |
| 12 | GO:0034972: histone H3-R26 methylation | 1.31E-04 |
| 13 | GO:0034214: protein hexamerization | 1.31E-04 |
| 14 | GO:0034971: histone H3-R17 methylation | 1.31E-04 |
| 15 | GO:0033206: meiotic cytokinesis | 1.31E-04 |
| 16 | GO:1900865: chloroplast RNA modification | 1.62E-04 |
| 17 | GO:1901529: positive regulation of anion channel activity | 3.03E-04 |
| 18 | GO:0010541: acropetal auxin transport | 3.03E-04 |
| 19 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 3.03E-04 |
| 20 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.64E-04 |
| 21 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 4.99E-04 |
| 22 | GO:0044210: 'de novo' CTP biosynthetic process | 4.99E-04 |
| 23 | GO:0006364: rRNA processing | 5.46E-04 |
| 24 | GO:0033169: histone H3-K9 demethylation | 7.14E-04 |
| 25 | GO:0009102: biotin biosynthetic process | 7.14E-04 |
| 26 | GO:0007276: gamete generation | 7.14E-04 |
| 27 | GO:0010371: regulation of gibberellin biosynthetic process | 7.14E-04 |
| 28 | GO:0009793: embryo development ending in seed dormancy | 7.44E-04 |
| 29 | GO:0010305: leaf vascular tissue pattern formation | 9.05E-04 |
| 30 | GO:1900864: mitochondrial RNA modification | 9.47E-04 |
| 31 | GO:0006221: pyrimidine nucleotide biosynthetic process | 9.47E-04 |
| 32 | GO:0006808: regulation of nitrogen utilization | 9.47E-04 |
| 33 | GO:0006479: protein methylation | 9.47E-04 |
| 34 | GO:0016123: xanthophyll biosynthetic process | 1.20E-03 |
| 35 | GO:0016120: carotene biosynthetic process | 1.20E-03 |
| 36 | GO:0006468: protein phosphorylation | 1.28E-03 |
| 37 | GO:0009959: negative gravitropism | 1.47E-03 |
| 38 | GO:0016554: cytidine to uridine editing | 1.47E-03 |
| 39 | GO:0042793: transcription from plastid promoter | 1.47E-03 |
| 40 | GO:0003006: developmental process involved in reproduction | 1.47E-03 |
| 41 | GO:0009643: photosynthetic acclimation | 1.47E-03 |
| 42 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.76E-03 |
| 43 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.76E-03 |
| 44 | GO:0010067: procambium histogenesis | 1.76E-03 |
| 45 | GO:2000033: regulation of seed dormancy process | 1.76E-03 |
| 46 | GO:0048481: plant ovule development | 2.05E-03 |
| 47 | GO:0010103: stomatal complex morphogenesis | 2.06E-03 |
| 48 | GO:0006401: RNA catabolic process | 2.06E-03 |
| 49 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 2.39E-03 |
| 50 | GO:0006402: mRNA catabolic process | 2.39E-03 |
| 51 | GO:0010492: maintenance of shoot apical meristem identity | 2.39E-03 |
| 52 | GO:0010233: phloem transport | 2.73E-03 |
| 53 | GO:0010100: negative regulation of photomorphogenesis | 2.73E-03 |
| 54 | GO:0032544: plastid translation | 2.73E-03 |
| 55 | GO:0009658: chloroplast organization | 2.90E-03 |
| 56 | GO:0048507: meristem development | 3.08E-03 |
| 57 | GO:0000373: Group II intron splicing | 3.08E-03 |
| 58 | GO:0048589: developmental growth | 3.08E-03 |
| 59 | GO:0031425: chloroplast RNA processing | 3.46E-03 |
| 60 | GO:0045893: positive regulation of transcription, DNA-templated | 3.49E-03 |
| 61 | GO:0019538: protein metabolic process | 3.84E-03 |
| 62 | GO:0006535: cysteine biosynthetic process from serine | 3.84E-03 |
| 63 | GO:0048829: root cap development | 3.84E-03 |
| 64 | GO:0006260: DNA replication | 4.02E-03 |
| 65 | GO:0046856: phosphatidylinositol dephosphorylation | 4.24E-03 |
| 66 | GO:0009750: response to fructose | 4.24E-03 |
| 67 | GO:0012501: programmed cell death | 4.65E-03 |
| 68 | GO:0045037: protein import into chloroplast stroma | 4.65E-03 |
| 69 | GO:0010582: floral meristem determinacy | 4.65E-03 |
| 70 | GO:0010152: pollen maturation | 4.65E-03 |
| 71 | GO:0010588: cotyledon vascular tissue pattern formation | 5.08E-03 |
| 72 | GO:0010102: lateral root morphogenesis | 5.08E-03 |
| 73 | GO:0048467: gynoecium development | 5.52E-03 |
| 74 | GO:0010020: chloroplast fission | 5.52E-03 |
| 75 | GO:0006270: DNA replication initiation | 5.52E-03 |
| 76 | GO:0010223: secondary shoot formation | 5.52E-03 |
| 77 | GO:0009887: animal organ morphogenesis | 5.52E-03 |
| 78 | GO:0010540: basipetal auxin transport | 5.52E-03 |
| 79 | GO:0009740: gibberellic acid mediated signaling pathway | 5.98E-03 |
| 80 | GO:0019344: cysteine biosynthetic process | 6.91E-03 |
| 81 | GO:0009863: salicylic acid mediated signaling pathway | 6.91E-03 |
| 82 | GO:0010187: negative regulation of seed germination | 6.91E-03 |
| 83 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 84 | GO:0010431: seed maturation | 7.91E-03 |
| 85 | GO:0003333: amino acid transmembrane transport | 7.91E-03 |
| 86 | GO:0001944: vasculature development | 8.95E-03 |
| 87 | GO:0048443: stamen development | 9.49E-03 |
| 88 | GO:0042127: regulation of cell proliferation | 9.49E-03 |
| 89 | GO:0010089: xylem development | 9.49E-03 |
| 90 | GO:0009734: auxin-activated signaling pathway | 9.65E-03 |
| 91 | GO:0040008: regulation of growth | 1.05E-02 |
| 92 | GO:0080022: primary root development | 1.06E-02 |
| 93 | GO:0008033: tRNA processing | 1.06E-02 |
| 94 | GO:0010501: RNA secondary structure unwinding | 1.06E-02 |
| 95 | GO:0010087: phloem or xylem histogenesis | 1.06E-02 |
| 96 | GO:0009451: RNA modification | 1.12E-02 |
| 97 | GO:0071472: cellular response to salt stress | 1.12E-02 |
| 98 | GO:0048544: recognition of pollen | 1.18E-02 |
| 99 | GO:0009739: response to gibberellin | 1.23E-02 |
| 100 | GO:0009749: response to glucose | 1.24E-02 |
| 101 | GO:0030163: protein catabolic process | 1.42E-02 |
| 102 | GO:0051301: cell division | 1.44E-02 |
| 103 | GO:0019760: glucosinolate metabolic process | 1.49E-02 |
| 104 | GO:0009639: response to red or far red light | 1.49E-02 |
| 105 | GO:0071805: potassium ion transmembrane transport | 1.55E-02 |
| 106 | GO:0010029: regulation of seed germination | 1.75E-02 |
| 107 | GO:0015995: chlorophyll biosynthetic process | 1.89E-02 |
| 108 | GO:0007049: cell cycle | 1.91E-02 |
| 109 | GO:0016311: dephosphorylation | 1.96E-02 |
| 110 | GO:0006351: transcription, DNA-templated | 2.15E-02 |
| 111 | GO:0006499: N-terminal protein myristoylation | 2.18E-02 |
| 112 | GO:0010218: response to far red light | 2.18E-02 |
| 113 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.19E-02 |
| 114 | GO:0006865: amino acid transport | 2.33E-02 |
| 115 | GO:0009867: jasmonic acid mediated signaling pathway | 2.41E-02 |
| 116 | GO:0045892: negative regulation of transcription, DNA-templated | 2.57E-02 |
| 117 | GO:0009744: response to sucrose | 2.88E-02 |
| 118 | GO:0006397: mRNA processing | 3.26E-02 |
| 119 | GO:0042538: hyperosmotic salinity response | 3.39E-02 |
| 120 | GO:0009585: red, far-red light phototransduction | 3.56E-02 |
| 121 | GO:0006813: potassium ion transport | 3.56E-02 |
| 122 | GO:0009736: cytokinin-activated signaling pathway | 3.56E-02 |
| 123 | GO:0009733: response to auxin | 3.63E-02 |
| 124 | GO:0009909: regulation of flower development | 3.83E-02 |
| 125 | GO:0048367: shoot system development | 4.11E-02 |
| 126 | GO:0016567: protein ubiquitination | 4.31E-02 |
| 127 | GO:0016569: covalent chromatin modification | 4.39E-02 |
| 128 | GO:0009553: embryo sac development | 4.48E-02 |
| 129 | GO:0006396: RNA processing | 4.67E-02 |
| 130 | GO:0051726: regulation of cell cycle | 4.77E-02 |
| 131 | GO:0009908: flower development | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 3 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 4 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 5 | GO:0004824: lysine-tRNA ligase activity | 1.31E-04 |
| 6 | GO:0016274: protein-arginine N-methyltransferase activity | 1.31E-04 |
| 7 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.31E-04 |
| 8 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 3.03E-04 |
| 9 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 3.03E-04 |
| 10 | GO:0032454: histone demethylase activity (H3-K9 specific) | 3.03E-04 |
| 11 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 3.03E-04 |
| 12 | GO:0008469: histone-arginine N-methyltransferase activity | 4.99E-04 |
| 13 | GO:0009041: uridylate kinase activity | 7.14E-04 |
| 14 | GO:0003883: CTP synthase activity | 7.14E-04 |
| 15 | GO:0042803: protein homodimerization activity | 9.32E-04 |
| 16 | GO:0010011: auxin binding | 9.47E-04 |
| 17 | GO:0010328: auxin influx transmembrane transporter activity | 9.47E-04 |
| 18 | GO:0005524: ATP binding | 1.04E-03 |
| 19 | GO:0004674: protein serine/threonine kinase activity | 1.25E-03 |
| 20 | GO:0003723: RNA binding | 1.31E-03 |
| 21 | GO:0003688: DNA replication origin binding | 1.47E-03 |
| 22 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.47E-03 |
| 23 | GO:0004124: cysteine synthase activity | 1.76E-03 |
| 24 | GO:0030515: snoRNA binding | 2.06E-03 |
| 25 | GO:0000989: transcription factor activity, transcription factor binding | 3.08E-03 |
| 26 | GO:0031490: chromatin DNA binding | 3.46E-03 |
| 27 | GO:0004672: protein kinase activity | 4.04E-03 |
| 28 | GO:0008327: methyl-CpG binding | 4.24E-03 |
| 29 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 4.65E-03 |
| 30 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 4.65E-03 |
| 31 | GO:0000175: 3'-5'-exoribonuclease activity | 5.08E-03 |
| 32 | GO:0003725: double-stranded RNA binding | 5.08E-03 |
| 33 | GO:0004190: aspartic-type endopeptidase activity | 5.97E-03 |
| 34 | GO:0003779: actin binding | 6.16E-03 |
| 35 | GO:0004519: endonuclease activity | 6.94E-03 |
| 36 | GO:0015079: potassium ion transmembrane transporter activity | 7.40E-03 |
| 37 | GO:0030170: pyridoxal phosphate binding | 8.83E-03 |
| 38 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 9.06E-03 |
| 39 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 40 | GO:0019901: protein kinase binding | 1.24E-02 |
| 41 | GO:0008168: methyltransferase activity | 1.64E-02 |
| 42 | GO:0004004: ATP-dependent RNA helicase activity | 1.89E-02 |
| 43 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.00E-02 |
| 44 | GO:0004222: metalloendopeptidase activity | 2.18E-02 |
| 45 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.18E-02 |
| 46 | GO:0003676: nucleic acid binding | 2.39E-02 |
| 47 | GO:0003697: single-stranded DNA binding | 2.41E-02 |
| 48 | GO:0003993: acid phosphatase activity | 2.48E-02 |
| 49 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.64E-02 |
| 50 | GO:0004871: signal transducer activity | 2.66E-02 |
| 51 | GO:0043621: protein self-association | 3.05E-02 |
| 52 | GO:0003677: DNA binding | 3.08E-02 |
| 53 | GO:0015293: symporter activity | 3.13E-02 |
| 54 | GO:0043565: sequence-specific DNA binding | 3.44E-02 |
| 55 | GO:0016298: lipase activity | 3.65E-02 |
| 56 | GO:0015171: amino acid transmembrane transporter activity | 3.83E-02 |
| 57 | GO:0005515: protein binding | 4.38E-02 |
| 58 | GO:0016874: ligase activity | 4.39E-02 |
| 59 | GO:0008026: ATP-dependent helicase activity | 4.77E-02 |