GO Enrichment Analysis of Co-expressed Genes with
AT3G61830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0033206: meiotic cytokinesis | 0.00E+00 |
| 4 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 5 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 6 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.02E-07 |
| 7 | GO:2000038: regulation of stomatal complex development | 2.61E-05 |
| 8 | GO:0006351: transcription, DNA-templated | 6.05E-05 |
| 9 | GO:0042793: transcription from plastid promoter | 6.24E-05 |
| 10 | GO:2000033: regulation of seed dormancy process | 8.69E-05 |
| 11 | GO:0010305: leaf vascular tissue pattern formation | 1.13E-04 |
| 12 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.48E-04 |
| 13 | GO:0010480: microsporocyte differentiation | 1.86E-04 |
| 14 | GO:0034971: histone H3-R17 methylation | 1.86E-04 |
| 15 | GO:0010342: endosperm cellularization | 1.86E-04 |
| 16 | GO:0034757: negative regulation of iron ion transport | 1.86E-04 |
| 17 | GO:0048016: inositol phosphate-mediated signaling | 1.86E-04 |
| 18 | GO:0034970: histone H3-R2 methylation | 1.86E-04 |
| 19 | GO:0034972: histone H3-R26 methylation | 1.86E-04 |
| 20 | GO:1903866: palisade mesophyll development | 1.86E-04 |
| 21 | GO:0010029: regulation of seed germination | 2.78E-04 |
| 22 | GO:0030422: production of siRNA involved in RNA interference | 3.16E-04 |
| 23 | GO:0048229: gametophyte development | 3.66E-04 |
| 24 | GO:0000160: phosphorelay signal transduction system | 3.93E-04 |
| 25 | GO:0010271: regulation of chlorophyll catabolic process | 4.19E-04 |
| 26 | GO:0009662: etioplast organization | 4.19E-04 |
| 27 | GO:0080009: mRNA methylation | 4.19E-04 |
| 28 | GO:0009786: regulation of asymmetric cell division | 4.19E-04 |
| 29 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 4.19E-04 |
| 30 | GO:2000123: positive regulation of stomatal complex development | 4.19E-04 |
| 31 | GO:0010254: nectary development | 4.19E-04 |
| 32 | GO:0010434: bract formation | 4.19E-04 |
| 33 | GO:0048439: flower morphogenesis | 4.19E-04 |
| 34 | GO:0010589: leaf proximal/distal pattern formation | 6.84E-04 |
| 35 | GO:0009954: proximal/distal pattern formation | 6.84E-04 |
| 36 | GO:0080117: secondary growth | 6.84E-04 |
| 37 | GO:0071705: nitrogen compound transport | 6.84E-04 |
| 38 | GO:0090391: granum assembly | 6.84E-04 |
| 39 | GO:2000377: regulation of reactive oxygen species metabolic process | 7.41E-04 |
| 40 | GO:0009863: salicylic acid mediated signaling pathway | 7.41E-04 |
| 41 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.41E-04 |
| 42 | GO:0010187: negative regulation of seed germination | 7.41E-04 |
| 43 | GO:0046739: transport of virus in multicellular host | 9.77E-04 |
| 44 | GO:0009558: embryo sac cellularization | 9.77E-04 |
| 45 | GO:0019048: modulation by virus of host morphology or physiology | 9.77E-04 |
| 46 | GO:0031048: chromatin silencing by small RNA | 9.77E-04 |
| 47 | GO:0009736: cytokinin-activated signaling pathway | 9.97E-04 |
| 48 | GO:0009658: chloroplast organization | 9.99E-04 |
| 49 | GO:0009909: regulation of flower development | 1.13E-03 |
| 50 | GO:0006808: regulation of nitrogen utilization | 1.29E-03 |
| 51 | GO:0006479: protein methylation | 1.29E-03 |
| 52 | GO:1900864: mitochondrial RNA modification | 1.29E-03 |
| 53 | GO:0071249: cellular response to nitrate | 1.29E-03 |
| 54 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 1.29E-03 |
| 55 | GO:0000914: phragmoplast assembly | 1.29E-03 |
| 56 | GO:0051567: histone H3-K9 methylation | 1.29E-03 |
| 57 | GO:1902183: regulation of shoot apical meristem development | 1.65E-03 |
| 58 | GO:0032957: inositol trisphosphate metabolic process | 1.65E-03 |
| 59 | GO:0032876: negative regulation of DNA endoreduplication | 1.65E-03 |
| 60 | GO:0030308: negative regulation of cell growth | 1.65E-03 |
| 61 | GO:0010375: stomatal complex patterning | 1.65E-03 |
| 62 | GO:0009616: virus induced gene silencing | 1.65E-03 |
| 63 | GO:0006544: glycine metabolic process | 1.65E-03 |
| 64 | GO:0006468: protein phosphorylation | 1.75E-03 |
| 65 | GO:0010090: trichome morphogenesis | 2.01E-03 |
| 66 | GO:0016458: gene silencing | 2.03E-03 |
| 67 | GO:0009643: photosynthetic acclimation | 2.03E-03 |
| 68 | GO:0006563: L-serine metabolic process | 2.03E-03 |
| 69 | GO:0016554: cytidine to uridine editing | 2.03E-03 |
| 70 | GO:0042176: regulation of protein catabolic process | 2.03E-03 |
| 71 | GO:0046855: inositol phosphate dephosphorylation | 2.03E-03 |
| 72 | GO:0048831: regulation of shoot system development | 2.03E-03 |
| 73 | GO:0000910: cytokinesis | 2.40E-03 |
| 74 | GO:0009082: branched-chain amino acid biosynthetic process | 2.43E-03 |
| 75 | GO:0048509: regulation of meristem development | 2.43E-03 |
| 76 | GO:0009099: valine biosynthetic process | 2.43E-03 |
| 77 | GO:2000037: regulation of stomatal complex patterning | 2.43E-03 |
| 78 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.43E-03 |
| 79 | GO:0000911: cytokinesis by cell plate formation | 2.43E-03 |
| 80 | GO:0010067: procambium histogenesis | 2.43E-03 |
| 81 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 2.87E-03 |
| 82 | GO:0010103: stomatal complex morphogenesis | 2.87E-03 |
| 83 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 2.87E-03 |
| 84 | GO:0006955: immune response | 2.87E-03 |
| 85 | GO:0048437: floral organ development | 2.87E-03 |
| 86 | GO:0030162: regulation of proteolysis | 3.32E-03 |
| 87 | GO:0042255: ribosome assembly | 3.32E-03 |
| 88 | GO:0006353: DNA-templated transcription, termination | 3.32E-03 |
| 89 | GO:0009739: response to gibberellin | 3.57E-03 |
| 90 | GO:0010218: response to far red light | 3.64E-03 |
| 91 | GO:0009097: isoleucine biosynthetic process | 3.80E-03 |
| 92 | GO:0010093: specification of floral organ identity | 3.80E-03 |
| 93 | GO:0001510: RNA methylation | 3.80E-03 |
| 94 | GO:0010233: phloem transport | 3.80E-03 |
| 95 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.80E-03 |
| 96 | GO:0048574: long-day photoperiodism, flowering | 3.80E-03 |
| 97 | GO:0009867: jasmonic acid mediated signaling pathway | 4.19E-03 |
| 98 | GO:2000024: regulation of leaf development | 4.30E-03 |
| 99 | GO:0000373: Group II intron splicing | 4.30E-03 |
| 100 | GO:0048507: meristem development | 4.30E-03 |
| 101 | GO:0006355: regulation of transcription, DNA-templated | 4.37E-03 |
| 102 | GO:0035999: tetrahydrofolate interconversion | 4.82E-03 |
| 103 | GO:1900865: chloroplast RNA modification | 4.82E-03 |
| 104 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.82E-03 |
| 105 | GO:0006349: regulation of gene expression by genetic imprinting | 4.82E-03 |
| 106 | GO:0006535: cysteine biosynthetic process from serine | 5.36E-03 |
| 107 | GO:0048829: root cap development | 5.36E-03 |
| 108 | GO:0006949: syncytium formation | 5.36E-03 |
| 109 | GO:0010048: vernalization response | 5.36E-03 |
| 110 | GO:0046856: phosphatidylinositol dephosphorylation | 5.92E-03 |
| 111 | GO:0009416: response to light stimulus | 5.96E-03 |
| 112 | GO:0009723: response to ethylene | 6.48E-03 |
| 113 | GO:0008361: regulation of cell size | 6.51E-03 |
| 114 | GO:0010582: floral meristem determinacy | 6.51E-03 |
| 115 | GO:0015706: nitrate transport | 6.51E-03 |
| 116 | GO:0042538: hyperosmotic salinity response | 6.76E-03 |
| 117 | GO:0010075: regulation of meristem growth | 7.11E-03 |
| 118 | GO:0010588: cotyledon vascular tissue pattern formation | 7.11E-03 |
| 119 | GO:0010102: lateral root morphogenesis | 7.11E-03 |
| 120 | GO:0009934: regulation of meristem structural organization | 7.73E-03 |
| 121 | GO:0010020: chloroplast fission | 7.73E-03 |
| 122 | GO:0010167: response to nitrate | 8.37E-03 |
| 123 | GO:0006071: glycerol metabolic process | 9.03E-03 |
| 124 | GO:0045892: negative regulation of transcription, DNA-templated | 9.07E-03 |
| 125 | GO:0019344: cysteine biosynthetic process | 9.71E-03 |
| 126 | GO:0009740: gibberellic acid mediated signaling pathway | 9.74E-03 |
| 127 | GO:0016998: cell wall macromolecule catabolic process | 1.11E-02 |
| 128 | GO:0006306: DNA methylation | 1.11E-02 |
| 129 | GO:0010227: floral organ abscission | 1.26E-02 |
| 130 | GO:0071215: cellular response to abscisic acid stimulus | 1.26E-02 |
| 131 | GO:0006284: base-excision repair | 1.34E-02 |
| 132 | GO:0070417: cellular response to cold | 1.42E-02 |
| 133 | GO:0000271: polysaccharide biosynthetic process | 1.50E-02 |
| 134 | GO:0010501: RNA secondary structure unwinding | 1.50E-02 |
| 135 | GO:0010051: xylem and phloem pattern formation | 1.50E-02 |
| 136 | GO:0010087: phloem or xylem histogenesis | 1.50E-02 |
| 137 | GO:0048653: anther development | 1.50E-02 |
| 138 | GO:0042631: cellular response to water deprivation | 1.50E-02 |
| 139 | GO:0009790: embryo development | 1.52E-02 |
| 140 | GO:0006342: chromatin silencing | 1.58E-02 |
| 141 | GO:0009960: endosperm development | 1.58E-02 |
| 142 | GO:0045489: pectin biosynthetic process | 1.58E-02 |
| 143 | GO:0048544: recognition of pollen | 1.66E-02 |
| 144 | GO:0007018: microtubule-based movement | 1.66E-02 |
| 145 | GO:0040008: regulation of growth | 1.71E-02 |
| 146 | GO:0071555: cell wall organization | 1.73E-02 |
| 147 | GO:0009737: response to abscisic acid | 1.81E-02 |
| 148 | GO:0032502: developmental process | 1.92E-02 |
| 149 | GO:0010583: response to cyclopentenone | 1.92E-02 |
| 150 | GO:0030154: cell differentiation | 1.97E-02 |
| 151 | GO:0009733: response to auxin | 2.06E-02 |
| 152 | GO:0009793: embryo development ending in seed dormancy | 2.08E-02 |
| 153 | GO:0009828: plant-type cell wall loosening | 2.10E-02 |
| 154 | GO:0007267: cell-cell signaling | 2.19E-02 |
| 155 | GO:0071805: potassium ion transmembrane transport | 2.19E-02 |
| 156 | GO:0051607: defense response to virus | 2.29E-02 |
| 157 | GO:0001666: response to hypoxia | 2.38E-02 |
| 158 | GO:0010027: thylakoid membrane organization | 2.38E-02 |
| 159 | GO:0009816: defense response to bacterium, incompatible interaction | 2.48E-02 |
| 160 | GO:0010411: xyloglucan metabolic process | 2.67E-02 |
| 161 | GO:0048481: plant ovule development | 2.88E-02 |
| 162 | GO:0010311: lateral root formation | 2.98E-02 |
| 163 | GO:0006970: response to osmotic stress | 2.99E-02 |
| 164 | GO:0006811: ion transport | 3.08E-02 |
| 165 | GO:0009910: negative regulation of flower development | 3.19E-02 |
| 166 | GO:0010119: regulation of stomatal movement | 3.19E-02 |
| 167 | GO:0006412: translation | 3.24E-02 |
| 168 | GO:0016051: carbohydrate biosynthetic process | 3.40E-02 |
| 169 | GO:0030001: metal ion transport | 3.74E-02 |
| 170 | GO:0009651: response to salt stress | 3.86E-02 |
| 171 | GO:0010114: response to red light | 4.08E-02 |
| 172 | GO:0009640: photomorphogenesis | 4.08E-02 |
| 173 | GO:0042546: cell wall biogenesis | 4.19E-02 |
| 174 | GO:0009636: response to toxic substance | 4.43E-02 |
| 175 | GO:0009965: leaf morphogenesis | 4.43E-02 |
| 176 | GO:0031347: regulation of defense response | 4.67E-02 |
| 177 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.67E-02 |
| 178 | GO:0009664: plant-type cell wall organization | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004455: ketol-acid reductoisomerase activity | 0.00E+00 |
| 2 | GO:0004674: protein serine/threonine kinase activity | 3.83E-05 |
| 3 | GO:0042834: peptidoglycan binding | 1.86E-04 |
| 4 | GO:0046030: inositol trisphosphate phosphatase activity | 1.86E-04 |
| 5 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.86E-04 |
| 6 | GO:0016274: protein-arginine N-methyltransferase activity | 1.86E-04 |
| 7 | GO:0000989: transcription factor activity, transcription factor binding | 2.25E-04 |
| 8 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 4.19E-04 |
| 9 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 4.19E-04 |
| 10 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.19E-04 |
| 11 | GO:0009884: cytokinin receptor activity | 4.19E-04 |
| 12 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 4.19E-04 |
| 13 | GO:0032549: ribonucleoside binding | 6.84E-04 |
| 14 | GO:0016805: dipeptidase activity | 6.84E-04 |
| 15 | GO:0005034: osmosensor activity | 6.84E-04 |
| 16 | GO:0008469: histone-arginine N-methyltransferase activity | 6.84E-04 |
| 17 | GO:0004180: carboxypeptidase activity | 6.84E-04 |
| 18 | GO:0017150: tRNA dihydrouridine synthase activity | 6.84E-04 |
| 19 | GO:0070181: small ribosomal subunit rRNA binding | 6.84E-04 |
| 20 | GO:0035197: siRNA binding | 9.77E-04 |
| 21 | GO:0003777: microtubule motor activity | 1.13E-03 |
| 22 | GO:0003727: single-stranded RNA binding | 1.15E-03 |
| 23 | GO:0019199: transmembrane receptor protein kinase activity | 1.29E-03 |
| 24 | GO:0003735: structural constituent of ribosome | 1.57E-03 |
| 25 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.65E-03 |
| 26 | GO:0004372: glycine hydroxymethyltransferase activity | 1.65E-03 |
| 27 | GO:0003723: RNA binding | 1.80E-03 |
| 28 | GO:0042803: protein homodimerization activity | 1.94E-03 |
| 29 | GO:0000156: phosphorelay response regulator activity | 2.01E-03 |
| 30 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.03E-03 |
| 31 | GO:0019900: kinase binding | 2.43E-03 |
| 32 | GO:0004124: cysteine synthase activity | 2.43E-03 |
| 33 | GO:0016301: kinase activity | 2.69E-03 |
| 34 | GO:0008017: microtubule binding | 3.27E-03 |
| 35 | GO:0008173: RNA methyltransferase activity | 3.80E-03 |
| 36 | GO:0003697: single-stranded DNA binding | 4.19E-03 |
| 37 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.30E-03 |
| 38 | GO:0008168: methyltransferase activity | 5.13E-03 |
| 39 | GO:0004673: protein histidine kinase activity | 5.36E-03 |
| 40 | GO:0008171: O-methyltransferase activity | 5.36E-03 |
| 41 | GO:0001054: RNA polymerase I activity | 5.92E-03 |
| 42 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.92E-03 |
| 43 | GO:0004521: endoribonuclease activity | 6.51E-03 |
| 44 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.51E-03 |
| 45 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.11E-03 |
| 46 | GO:0031072: heat shock protein binding | 7.11E-03 |
| 47 | GO:0000155: phosphorelay sensor kinase activity | 7.11E-03 |
| 48 | GO:0003725: double-stranded RNA binding | 7.11E-03 |
| 49 | GO:0005515: protein binding | 7.18E-03 |
| 50 | GO:0003690: double-stranded DNA binding | 7.51E-03 |
| 51 | GO:0004871: signal transducer activity | 9.44E-03 |
| 52 | GO:0004672: protein kinase activity | 9.52E-03 |
| 53 | GO:0015079: potassium ion transmembrane transporter activity | 1.04E-02 |
| 54 | GO:0043424: protein histidine kinase binding | 1.04E-02 |
| 55 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.04E-02 |
| 56 | GO:0033612: receptor serine/threonine kinase binding | 1.11E-02 |
| 57 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.19E-02 |
| 58 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.23E-02 |
| 59 | GO:0019843: rRNA binding | 1.30E-02 |
| 60 | GO:0018024: histone-lysine N-methyltransferase activity | 1.42E-02 |
| 61 | GO:0030170: pyridoxal phosphate binding | 1.44E-02 |
| 62 | GO:0005524: ATP binding | 1.50E-02 |
| 63 | GO:0001085: RNA polymerase II transcription factor binding | 1.58E-02 |
| 64 | GO:0019901: protein kinase binding | 1.75E-02 |
| 65 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.83E-02 |
| 66 | GO:0016759: cellulose synthase activity | 2.10E-02 |
| 67 | GO:0004004: ATP-dependent RNA helicase activity | 2.67E-02 |
| 68 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.67E-02 |
| 69 | GO:0003682: chromatin binding | 2.94E-02 |
| 70 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.19E-02 |
| 71 | GO:0050660: flavin adenine dinucleotide binding | 3.22E-02 |
| 72 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.74E-02 |
| 73 | GO:0003677: DNA binding | 3.77E-02 |
| 74 | GO:0043621: protein self-association | 4.31E-02 |