GO Enrichment Analysis of Co-expressed Genes with
AT3G61310
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 2 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 3 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 4 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 5 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 6 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 7 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 8 | GO:0009606: tropism | 0.00E+00 |
| 9 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 10 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 11 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 12 | GO:1900864: mitochondrial RNA modification | 2.35E-05 |
| 13 | GO:0009913: epidermal cell differentiation | 5.65E-05 |
| 14 | GO:0042255: ribosome assembly | 1.35E-04 |
| 15 | GO:0006353: DNA-templated transcription, termination | 1.35E-04 |
| 16 | GO:0009658: chloroplast organization | 1.38E-04 |
| 17 | GO:0034757: negative regulation of iron ion transport | 1.75E-04 |
| 18 | GO:0080112: seed growth | 1.75E-04 |
| 19 | GO:0043971: histone H3-K18 acetylation | 1.75E-04 |
| 20 | GO:1905039: carboxylic acid transmembrane transport | 1.75E-04 |
| 21 | GO:1905200: gibberellic acid transmembrane transport | 1.75E-04 |
| 22 | GO:1900865: chloroplast RNA modification | 2.46E-04 |
| 23 | GO:0048829: root cap development | 2.90E-04 |
| 24 | GO:0010569: regulation of double-strand break repair via homologous recombination | 3.96E-04 |
| 25 | GO:0048731: system development | 3.96E-04 |
| 26 | GO:0010271: regulation of chlorophyll catabolic process | 3.96E-04 |
| 27 | GO:1900033: negative regulation of trichome patterning | 3.96E-04 |
| 28 | GO:0010588: cotyledon vascular tissue pattern formation | 4.39E-04 |
| 29 | GO:0080188: RNA-directed DNA methylation | 5.54E-04 |
| 30 | GO:0030029: actin filament-based process | 6.47E-04 |
| 31 | GO:0080117: secondary growth | 6.47E-04 |
| 32 | GO:0006518: peptide metabolic process | 6.47E-04 |
| 33 | GO:0009734: auxin-activated signaling pathway | 8.15E-04 |
| 34 | GO:0003333: amino acid transmembrane transport | 8.23E-04 |
| 35 | GO:0010371: regulation of gibberellin biosynthetic process | 9.23E-04 |
| 36 | GO:0010239: chloroplast mRNA processing | 9.23E-04 |
| 37 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 9.23E-04 |
| 38 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 9.23E-04 |
| 39 | GO:0048629: trichome patterning | 1.22E-03 |
| 40 | GO:2000038: regulation of stomatal complex development | 1.22E-03 |
| 41 | GO:0010087: phloem or xylem histogenesis | 1.23E-03 |
| 42 | GO:0010305: leaf vascular tissue pattern formation | 1.32E-03 |
| 43 | GO:0048825: cotyledon development | 1.52E-03 |
| 44 | GO:0006355: regulation of transcription, DNA-templated | 1.52E-03 |
| 45 | GO:0032876: negative regulation of DNA endoreduplication | 1.56E-03 |
| 46 | GO:0030308: negative regulation of cell growth | 1.56E-03 |
| 47 | GO:0048497: maintenance of floral organ identity | 1.56E-03 |
| 48 | GO:0080156: mitochondrial mRNA modification | 1.63E-03 |
| 49 | GO:0009959: negative gravitropism | 1.91E-03 |
| 50 | GO:0016554: cytidine to uridine editing | 1.91E-03 |
| 51 | GO:0010315: auxin efflux | 1.91E-03 |
| 52 | GO:0042793: transcription from plastid promoter | 1.91E-03 |
| 53 | GO:0048831: regulation of shoot system development | 1.91E-03 |
| 54 | GO:0009845: seed germination | 2.04E-03 |
| 55 | GO:2000037: regulation of stomatal complex patterning | 2.30E-03 |
| 56 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.30E-03 |
| 57 | GO:1901259: chloroplast rRNA processing | 2.30E-03 |
| 58 | GO:0048509: regulation of meristem development | 2.30E-03 |
| 59 | GO:0010103: stomatal complex morphogenesis | 2.70E-03 |
| 60 | GO:0006401: RNA catabolic process | 2.70E-03 |
| 61 | GO:0006955: immune response | 2.70E-03 |
| 62 | GO:0052543: callose deposition in cell wall | 3.13E-03 |
| 63 | GO:0009642: response to light intensity | 3.13E-03 |
| 64 | GO:0046620: regulation of organ growth | 3.13E-03 |
| 65 | GO:0048766: root hair initiation | 3.13E-03 |
| 66 | GO:0008380: RNA splicing | 3.47E-03 |
| 67 | GO:0009827: plant-type cell wall modification | 3.58E-03 |
| 68 | GO:0009657: plastid organization | 3.58E-03 |
| 69 | GO:0006997: nucleus organization | 3.58E-03 |
| 70 | GO:0007389: pattern specification process | 3.58E-03 |
| 71 | GO:0044030: regulation of DNA methylation | 3.58E-03 |
| 72 | GO:0006865: amino acid transport | 3.68E-03 |
| 73 | GO:0000373: Group II intron splicing | 4.05E-03 |
| 74 | GO:0048589: developmental growth | 4.05E-03 |
| 75 | GO:0030001: metal ion transport | 4.38E-03 |
| 76 | GO:0006349: regulation of gene expression by genetic imprinting | 4.54E-03 |
| 77 | GO:0016571: histone methylation | 4.54E-03 |
| 78 | GO:0016573: histone acetylation | 4.54E-03 |
| 79 | GO:0010048: vernalization response | 5.05E-03 |
| 80 | GO:0009416: response to light stimulus | 5.23E-03 |
| 81 | GO:0006970: response to osmotic stress | 5.30E-03 |
| 82 | GO:0048765: root hair cell differentiation | 5.58E-03 |
| 83 | GO:0046856: phosphatidylinositol dephosphorylation | 5.58E-03 |
| 84 | GO:0015770: sucrose transport | 5.58E-03 |
| 85 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.58E-03 |
| 86 | GO:0009750: response to fructose | 5.58E-03 |
| 87 | GO:0008361: regulation of cell size | 6.13E-03 |
| 88 | GO:0012501: programmed cell death | 6.13E-03 |
| 89 | GO:0045037: protein import into chloroplast stroma | 6.13E-03 |
| 90 | GO:0010152: pollen maturation | 6.13E-03 |
| 91 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.62E-03 |
| 92 | GO:0010102: lateral root morphogenesis | 6.70E-03 |
| 93 | GO:0009266: response to temperature stimulus | 7.28E-03 |
| 94 | GO:0010020: chloroplast fission | 7.28E-03 |
| 95 | GO:0009901: anther dehiscence | 7.89E-03 |
| 96 | GO:0048367: shoot system development | 8.14E-03 |
| 97 | GO:0006338: chromatin remodeling | 9.15E-03 |
| 98 | GO:0080147: root hair cell development | 9.15E-03 |
| 99 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.15E-03 |
| 100 | GO:0006351: transcription, DNA-templated | 9.95E-03 |
| 101 | GO:0010431: seed maturation | 1.05E-02 |
| 102 | GO:0016998: cell wall macromolecule catabolic process | 1.05E-02 |
| 103 | GO:0048364: root development | 1.10E-02 |
| 104 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.12E-02 |
| 105 | GO:0071215: cellular response to abscisic acid stimulus | 1.19E-02 |
| 106 | GO:0010082: regulation of root meristem growth | 1.19E-02 |
| 107 | GO:0048443: stamen development | 1.26E-02 |
| 108 | GO:0042127: regulation of cell proliferation | 1.26E-02 |
| 109 | GO:0070417: cellular response to cold | 1.33E-02 |
| 110 | GO:0042631: cellular response to water deprivation | 1.41E-02 |
| 111 | GO:0042335: cuticle development | 1.41E-02 |
| 112 | GO:0080022: primary root development | 1.41E-02 |
| 113 | GO:0010501: RNA secondary structure unwinding | 1.41E-02 |
| 114 | GO:0009960: endosperm development | 1.49E-02 |
| 115 | GO:0071472: cellular response to salt stress | 1.49E-02 |
| 116 | GO:0009958: positive gravitropism | 1.49E-02 |
| 117 | GO:0007018: microtubule-based movement | 1.56E-02 |
| 118 | GO:0009749: response to glucose | 1.64E-02 |
| 119 | GO:0009451: RNA modification | 1.69E-02 |
| 120 | GO:0009793: embryo development ending in seed dormancy | 1.79E-02 |
| 121 | GO:0032502: developmental process | 1.81E-02 |
| 122 | GO:0009630: gravitropism | 1.81E-02 |
| 123 | GO:0009733: response to auxin | 1.81E-02 |
| 124 | GO:0030163: protein catabolic process | 1.89E-02 |
| 125 | GO:0010090: trichome morphogenesis | 1.89E-02 |
| 126 | GO:0010252: auxin homeostasis | 1.98E-02 |
| 127 | GO:0009639: response to red or far red light | 1.98E-02 |
| 128 | GO:0010029: regulation of seed germination | 2.33E-02 |
| 129 | GO:0048481: plant ovule development | 2.71E-02 |
| 130 | GO:0048767: root hair elongation | 2.80E-02 |
| 131 | GO:0000160: phosphorelay signal transduction system | 2.80E-02 |
| 132 | GO:0016567: protein ubiquitination | 2.85E-02 |
| 133 | GO:0009910: negative regulation of flower development | 3.00E-02 |
| 134 | GO:0048366: leaf development | 3.00E-02 |
| 135 | GO:0009926: auxin polar transport | 3.84E-02 |
| 136 | GO:0009744: response to sucrose | 3.84E-02 |
| 137 | GO:0045892: negative regulation of transcription, DNA-templated | 3.84E-02 |
| 138 | GO:0008283: cell proliferation | 3.84E-02 |
| 139 | GO:0006869: lipid transport | 4.14E-02 |
| 140 | GO:0009636: response to toxic substance | 4.17E-02 |
| 141 | GO:0031347: regulation of defense response | 4.39E-02 |
| 142 | GO:0032259: methylation | 4.46E-02 |
| 143 | GO:0006281: DNA repair | 4.65E-02 |
| 144 | GO:0006364: rRNA processing | 4.74E-02 |
| 145 | GO:0009736: cytokinin-activated signaling pathway | 4.74E-02 |
| 146 | GO:0006397: mRNA processing | 4.85E-02 |
| 147 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.86E-02 |
| 148 | GO:0009414: response to water deprivation | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 2 | GO:0003697: single-stranded DNA binding | 3.51E-05 |
| 3 | GO:0003727: single-stranded RNA binding | 7.02E-05 |
| 4 | GO:0004016: adenylate cyclase activity | 1.75E-04 |
| 5 | GO:1905201: gibberellin transmembrane transporter activity | 1.75E-04 |
| 6 | GO:0042834: peptidoglycan binding | 1.75E-04 |
| 7 | GO:0009884: cytokinin receptor activity | 3.96E-04 |
| 8 | GO:0003723: RNA binding | 5.16E-04 |
| 9 | GO:0070180: large ribosomal subunit rRNA binding | 6.47E-04 |
| 10 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 6.47E-04 |
| 11 | GO:0005034: osmosensor activity | 6.47E-04 |
| 12 | GO:0003690: double-stranded DNA binding | 9.37E-04 |
| 13 | GO:0010011: auxin binding | 1.22E-03 |
| 14 | GO:0010328: auxin influx transmembrane transporter activity | 1.22E-03 |
| 15 | GO:0010385: double-stranded methylated DNA binding | 1.22E-03 |
| 16 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.91E-03 |
| 17 | GO:0019900: kinase binding | 2.30E-03 |
| 18 | GO:0004519: endonuclease activity | 2.48E-03 |
| 19 | GO:0030515: snoRNA binding | 2.70E-03 |
| 20 | GO:0008289: lipid binding | 3.62E-03 |
| 21 | GO:0009672: auxin:proton symporter activity | 4.54E-03 |
| 22 | GO:0004673: protein histidine kinase activity | 5.05E-03 |
| 23 | GO:0015293: symporter activity | 5.56E-03 |
| 24 | GO:0008559: xenobiotic-transporting ATPase activity | 5.58E-03 |
| 25 | GO:0008515: sucrose transmembrane transporter activity | 5.58E-03 |
| 26 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.13E-03 |
| 27 | GO:0000155: phosphorelay sensor kinase activity | 6.70E-03 |
| 28 | GO:0009982: pseudouridine synthase activity | 6.70E-03 |
| 29 | GO:0000175: 3'-5'-exoribonuclease activity | 6.70E-03 |
| 30 | GO:0010329: auxin efflux transmembrane transporter activity | 6.70E-03 |
| 31 | GO:0003725: double-stranded RNA binding | 6.70E-03 |
| 32 | GO:0003777: microtubule motor activity | 7.38E-03 |
| 33 | GO:0015171: amino acid transmembrane transporter activity | 7.38E-03 |
| 34 | GO:0004190: aspartic-type endopeptidase activity | 7.89E-03 |
| 35 | GO:0051119: sugar transmembrane transporter activity | 7.89E-03 |
| 36 | GO:0003677: DNA binding | 7.91E-03 |
| 37 | GO:0004871: signal transducer activity | 8.46E-03 |
| 38 | GO:0003714: transcription corepressor activity | 9.15E-03 |
| 39 | GO:0003779: actin binding | 9.21E-03 |
| 40 | GO:0043424: protein histidine kinase binding | 9.80E-03 |
| 41 | GO:0004540: ribonuclease activity | 1.05E-02 |
| 42 | GO:0030570: pectate lyase activity | 1.19E-02 |
| 43 | GO:0019843: rRNA binding | 1.19E-02 |
| 44 | GO:0005102: receptor binding | 1.33E-02 |
| 45 | GO:0018024: histone-lysine N-methyltransferase activity | 1.33E-02 |
| 46 | GO:0004402: histone acetyltransferase activity | 1.41E-02 |
| 47 | GO:0019901: protein kinase binding | 1.64E-02 |
| 48 | GO:0005515: protein binding | 1.69E-02 |
| 49 | GO:0005215: transporter activity | 1.77E-02 |
| 50 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.79E-02 |
| 51 | GO:0004197: cysteine-type endopeptidase activity | 1.81E-02 |
| 52 | GO:0005200: structural constituent of cytoskeleton | 2.06E-02 |
| 53 | GO:0008375: acetylglucosaminyltransferase activity | 2.42E-02 |
| 54 | GO:0008168: methyltransferase activity | 2.46E-02 |
| 55 | GO:0004004: ATP-dependent RNA helicase activity | 2.52E-02 |
| 56 | GO:0043565: sequence-specific DNA binding | 2.66E-02 |
| 57 | GO:0005096: GTPase activator activity | 2.80E-02 |
| 58 | GO:0004222: metalloendopeptidase activity | 2.90E-02 |
| 59 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.90E-02 |
| 60 | GO:0042393: histone binding | 3.52E-02 |