GO Enrichment Analysis of Co-expressed Genes with
AT3G60390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA | 0.00E+00 |
| 2 | GO:0048263: determination of dorsal identity | 0.00E+00 |
| 3 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 4 | GO:0080127: fruit septum development | 0.00E+00 |
| 5 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 6 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 7 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 8 | GO:0009733: response to auxin | 1.66E-04 |
| 9 | GO:0046620: regulation of organ growth | 1.78E-04 |
| 10 | GO:0080112: seed growth | 2.11E-04 |
| 11 | GO:0036228: protein targeting to nuclear inner membrane | 2.11E-04 |
| 12 | GO:1905039: carboxylic acid transmembrane transport | 2.11E-04 |
| 13 | GO:1905200: gibberellic acid transmembrane transport | 2.11E-04 |
| 14 | GO:0033206: meiotic cytokinesis | 2.11E-04 |
| 15 | GO:0006999: nuclear pore organization | 2.11E-04 |
| 16 | GO:0048829: root cap development | 3.76E-04 |
| 17 | GO:1901529: positive regulation of anion channel activity | 4.71E-04 |
| 18 | GO:0010569: regulation of double-strand break repair via homologous recombination | 4.71E-04 |
| 19 | GO:0048731: system development | 4.71E-04 |
| 20 | GO:0006650: glycerophospholipid metabolic process | 4.71E-04 |
| 21 | GO:2000071: regulation of defense response by callose deposition | 4.71E-04 |
| 22 | GO:0010588: cotyledon vascular tissue pattern formation | 5.67E-04 |
| 23 | GO:0009887: animal organ morphogenesis | 6.38E-04 |
| 24 | GO:0032259: methylation | 6.58E-04 |
| 25 | GO:0046168: glycerol-3-phosphate catabolic process | 7.67E-04 |
| 26 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 7.67E-04 |
| 27 | GO:0003333: amino acid transmembrane transport | 1.05E-03 |
| 28 | GO:0007276: gamete generation | 1.09E-03 |
| 29 | GO:0006072: glycerol-3-phosphate metabolic process | 1.09E-03 |
| 30 | GO:0009855: determination of bilateral symmetry | 1.09E-03 |
| 31 | GO:0045017: glycerolipid biosynthetic process | 1.09E-03 |
| 32 | GO:0009102: biotin biosynthetic process | 1.09E-03 |
| 33 | GO:0009152: purine ribonucleotide biosynthetic process | 1.09E-03 |
| 34 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.15E-03 |
| 35 | GO:0009734: auxin-activated signaling pathway | 1.29E-03 |
| 36 | GO:0009658: chloroplast organization | 1.30E-03 |
| 37 | GO:0042127: regulation of cell proliferation | 1.36E-03 |
| 38 | GO:2000032: regulation of secondary shoot formation | 1.45E-03 |
| 39 | GO:0006808: regulation of nitrogen utilization | 1.45E-03 |
| 40 | GO:0010087: phloem or xylem histogenesis | 1.58E-03 |
| 41 | GO:0045487: gibberellin catabolic process | 1.85E-03 |
| 42 | GO:0080110: sporopollenin biosynthetic process | 1.85E-03 |
| 43 | GO:0016131: brassinosteroid metabolic process | 1.85E-03 |
| 44 | GO:1904668: positive regulation of ubiquitin protein ligase activity | 2.28E-03 |
| 45 | GO:0042793: transcription from plastid promoter | 2.28E-03 |
| 46 | GO:0003006: developmental process involved in reproduction | 2.28E-03 |
| 47 | GO:0080060: integument development | 2.74E-03 |
| 48 | GO:2000033: regulation of seed dormancy process | 2.74E-03 |
| 49 | GO:0010014: meristem initiation | 2.74E-03 |
| 50 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.74E-03 |
| 51 | GO:0010098: suspensor development | 3.23E-03 |
| 52 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 3.23E-03 |
| 53 | GO:0006401: RNA catabolic process | 3.23E-03 |
| 54 | GO:0010374: stomatal complex development | 3.23E-03 |
| 55 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.74E-03 |
| 56 | GO:0042255: ribosome assembly | 3.74E-03 |
| 57 | GO:0006353: DNA-templated transcription, termination | 3.74E-03 |
| 58 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 3.74E-03 |
| 59 | GO:0010492: maintenance of shoot apical meristem identity | 3.74E-03 |
| 60 | GO:0052543: callose deposition in cell wall | 3.74E-03 |
| 61 | GO:0009451: RNA modification | 3.98E-03 |
| 62 | GO:0007186: G-protein coupled receptor signaling pathway | 4.29E-03 |
| 63 | GO:0010233: phloem transport | 4.29E-03 |
| 64 | GO:0010052: guard cell differentiation | 4.29E-03 |
| 65 | GO:0007389: pattern specification process | 4.29E-03 |
| 66 | GO:0010218: response to far red light | 4.35E-03 |
| 67 | GO:0006865: amino acid transport | 4.77E-03 |
| 68 | GO:0048507: meristem development | 4.85E-03 |
| 69 | GO:0048589: developmental growth | 4.85E-03 |
| 70 | GO:0006607: NLS-bearing protein import into nucleus | 4.85E-03 |
| 71 | GO:0009867: jasmonic acid mediated signaling pathway | 4.99E-03 |
| 72 | GO:0030001: metal ion transport | 5.68E-03 |
| 73 | GO:0006949: syncytium formation | 6.06E-03 |
| 74 | GO:0009926: auxin polar transport | 6.43E-03 |
| 75 | GO:0009682: induced systemic resistance | 6.69E-03 |
| 76 | GO:0015770: sucrose transport | 6.69E-03 |
| 77 | GO:1903507: negative regulation of nucleic acid-templated transcription | 6.69E-03 |
| 78 | GO:0009750: response to fructose | 6.69E-03 |
| 79 | GO:0010582: floral meristem determinacy | 7.36E-03 |
| 80 | GO:0010152: pollen maturation | 7.36E-03 |
| 81 | GO:0012501: programmed cell death | 7.36E-03 |
| 82 | GO:0031347: regulation of defense response | 7.79E-03 |
| 83 | GO:0009416: response to light stimulus | 7.80E-03 |
| 84 | GO:0007165: signal transduction | 7.95E-03 |
| 85 | GO:0010102: lateral root morphogenesis | 8.04E-03 |
| 86 | GO:0046274: lignin catabolic process | 8.04E-03 |
| 87 | GO:0010075: regulation of meristem growth | 8.04E-03 |
| 88 | GO:0006364: rRNA processing | 8.67E-03 |
| 89 | GO:0010020: chloroplast fission | 8.75E-03 |
| 90 | GO:0006270: DNA replication initiation | 8.75E-03 |
| 91 | GO:0048467: gynoecium development | 8.75E-03 |
| 92 | GO:0080188: RNA-directed DNA methylation | 9.48E-03 |
| 93 | GO:0009901: anther dehiscence | 9.48E-03 |
| 94 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.02E-02 |
| 95 | GO:0048367: shoot system development | 1.06E-02 |
| 96 | GO:0009863: salicylic acid mediated signaling pathway | 1.10E-02 |
| 97 | GO:0010187: negative regulation of seed germination | 1.10E-02 |
| 98 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.10E-02 |
| 99 | GO:0009740: gibberellic acid mediated signaling pathway | 1.16E-02 |
| 100 | GO:0006874: cellular calcium ion homeostasis | 1.18E-02 |
| 101 | GO:0010073: meristem maintenance | 1.18E-02 |
| 102 | GO:0006825: copper ion transport | 1.18E-02 |
| 103 | GO:0009624: response to nematode | 1.24E-02 |
| 104 | GO:0030245: cellulose catabolic process | 1.34E-02 |
| 105 | GO:0009686: gibberellin biosynthetic process | 1.43E-02 |
| 106 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.43E-02 |
| 107 | GO:0048443: stamen development | 1.52E-02 |
| 108 | GO:0006284: base-excision repair | 1.52E-02 |
| 109 | GO:0010584: pollen exine formation | 1.52E-02 |
| 110 | GO:0051028: mRNA transport | 1.61E-02 |
| 111 | GO:0009058: biosynthetic process | 1.64E-02 |
| 112 | GO:0080022: primary root development | 1.70E-02 |
| 113 | GO:0008033: tRNA processing | 1.70E-02 |
| 114 | GO:0010501: RNA secondary structure unwinding | 1.70E-02 |
| 115 | GO:0010118: stomatal movement | 1.70E-02 |
| 116 | GO:0010305: leaf vascular tissue pattern formation | 1.79E-02 |
| 117 | GO:0009741: response to brassinosteroid | 1.79E-02 |
| 118 | GO:0010268: brassinosteroid homeostasis | 1.79E-02 |
| 119 | GO:0009749: response to glucose | 1.98E-02 |
| 120 | GO:0008654: phospholipid biosynthetic process | 1.98E-02 |
| 121 | GO:0040008: regulation of growth | 2.05E-02 |
| 122 | GO:0080156: mitochondrial mRNA modification | 2.08E-02 |
| 123 | GO:0002229: defense response to oomycetes | 2.08E-02 |
| 124 | GO:0045490: pectin catabolic process | 2.14E-02 |
| 125 | GO:0010583: response to cyclopentenone | 2.18E-02 |
| 126 | GO:0030163: protein catabolic process | 2.28E-02 |
| 127 | GO:0019760: glucosinolate metabolic process | 2.38E-02 |
| 128 | GO:0006464: cellular protein modification process | 2.38E-02 |
| 129 | GO:0009828: plant-type cell wall loosening | 2.38E-02 |
| 130 | GO:0009739: response to gibberellin | 2.40E-02 |
| 131 | GO:0007166: cell surface receptor signaling pathway | 2.45E-02 |
| 132 | GO:0010029: regulation of seed germination | 2.81E-02 |
| 133 | GO:0009793: embryo development ending in seed dormancy | 2.81E-02 |
| 134 | GO:0009627: systemic acquired resistance | 2.92E-02 |
| 135 | GO:0009555: pollen development | 2.99E-02 |
| 136 | GO:0016311: dephosphorylation | 3.15E-02 |
| 137 | GO:0006811: ion transport | 3.50E-02 |
| 138 | GO:0045893: positive regulation of transcription, DNA-templated | 3.55E-02 |
| 139 | GO:0080167: response to karrikin | 4.11E-02 |
| 140 | GO:0010114: response to red light | 4.63E-02 |
| 141 | GO:0009744: response to sucrose | 4.63E-02 |
| 142 | GO:0051707: response to other organism | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004479: methionyl-tRNA formyltransferase activity | 0.00E+00 |
| 3 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 4 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 5 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 6 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 7 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 8 | GO:0008395: steroid hydroxylase activity | 2.11E-04 |
| 9 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.11E-04 |
| 10 | GO:1905201: gibberellin transmembrane transporter activity | 2.11E-04 |
| 11 | GO:0042389: omega-3 fatty acid desaturase activity | 4.71E-04 |
| 12 | GO:0045543: gibberellin 2-beta-dioxygenase activity | 4.71E-04 |
| 13 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 4.71E-04 |
| 14 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.67E-04 |
| 15 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 7.67E-04 |
| 16 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.67E-04 |
| 17 | GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity | 1.09E-03 |
| 18 | GO:0003723: RNA binding | 1.15E-03 |
| 19 | GO:0008168: methyltransferase activity | 1.23E-03 |
| 20 | GO:0030570: pectate lyase activity | 1.25E-03 |
| 21 | GO:0010328: auxin influx transmembrane transporter activity | 1.45E-03 |
| 22 | GO:0004930: G-protein coupled receptor activity | 1.45E-03 |
| 23 | GO:0010011: auxin binding | 1.45E-03 |
| 24 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.85E-03 |
| 25 | GO:0097027: ubiquitin-protein transferase activator activity | 2.28E-03 |
| 26 | GO:0003688: DNA replication origin binding | 2.28E-03 |
| 27 | GO:0016832: aldehyde-lyase activity | 2.74E-03 |
| 28 | GO:0010997: anaphase-promoting complex binding | 2.74E-03 |
| 29 | GO:0004519: endonuclease activity | 3.71E-03 |
| 30 | GO:0017056: structural constituent of nuclear pore | 3.74E-03 |
| 31 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.75E-03 |
| 32 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.29E-03 |
| 33 | GO:0000989: transcription factor activity, transcription factor binding | 4.85E-03 |
| 34 | GO:0003993: acid phosphatase activity | 5.21E-03 |
| 35 | GO:0005487: nucleocytoplasmic transporter activity | 5.44E-03 |
| 36 | GO:0004713: protein tyrosine kinase activity | 6.06E-03 |
| 37 | GO:0008515: sucrose transmembrane transporter activity | 6.69E-03 |
| 38 | GO:0015293: symporter activity | 7.22E-03 |
| 39 | GO:0052716: hydroquinone:oxygen oxidoreductase activity | 7.36E-03 |
| 40 | GO:0000175: 3'-5'-exoribonuclease activity | 8.04E-03 |
| 41 | GO:0003725: double-stranded RNA binding | 8.04E-03 |
| 42 | GO:0051119: sugar transmembrane transporter activity | 9.48E-03 |
| 43 | GO:0005217: intracellular ligand-gated ion channel activity | 9.48E-03 |
| 44 | GO:0004970: ionotropic glutamate receptor activity | 9.48E-03 |
| 45 | GO:0004190: aspartic-type endopeptidase activity | 9.48E-03 |
| 46 | GO:0015171: amino acid transmembrane transporter activity | 9.61E-03 |
| 47 | GO:0003714: transcription corepressor activity | 1.10E-02 |
| 48 | GO:0016874: ligase activity | 1.16E-02 |
| 49 | GO:0003779: actin binding | 1.20E-02 |
| 50 | GO:0004540: ribonuclease activity | 1.26E-02 |
| 51 | GO:0008810: cellulase activity | 1.43E-02 |
| 52 | GO:0003727: single-stranded RNA binding | 1.52E-02 |
| 53 | GO:0005102: receptor binding | 1.61E-02 |
| 54 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.77E-02 |
| 55 | GO:0010181: FMN binding | 1.88E-02 |
| 56 | GO:0050662: coenzyme binding | 1.88E-02 |
| 57 | GO:0019901: protein kinase binding | 1.98E-02 |
| 58 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.00E-02 |
| 59 | GO:0048038: quinone binding | 2.08E-02 |
| 60 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.26E-02 |
| 61 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.49E-02 |
| 62 | GO:0005200: structural constituent of cytoskeleton | 2.49E-02 |
| 63 | GO:0004004: ATP-dependent RNA helicase activity | 3.04E-02 |
| 64 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.50E-02 |
| 65 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.62E-02 |
| 66 | GO:0004672: protein kinase activity | 3.95E-02 |
| 67 | GO:0004674: protein serine/threonine kinase activity | 4.04E-02 |
| 68 | GO:0043621: protein self-association | 4.89E-02 |