GO Enrichment Analysis of Co-expressed Genes with
AT3G60380
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042817: pyridoxal metabolic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0046040: IMP metabolic process | 0.00E+00 |
| 4 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0006167: AMP biosynthetic process | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 9 | GO:0046460: neutral lipid biosynthetic process | 0.00E+00 |
| 10 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 11 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 12 | GO:0044249: cellular biosynthetic process | 0.00E+00 |
| 13 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.28E-05 |
| 14 | GO:0042793: transcription from plastid promoter | 7.77E-05 |
| 15 | GO:0009793: embryo development ending in seed dormancy | 8.51E-05 |
| 16 | GO:0042026: protein refolding | 1.08E-04 |
| 17 | GO:0006353: DNA-templated transcription, termination | 1.82E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 2.13E-04 |
| 19 | GO:1902458: positive regulation of stomatal opening | 2.13E-04 |
| 20 | GO:0000023: maltose metabolic process | 2.13E-04 |
| 21 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.13E-04 |
| 22 | GO:0006419: alanyl-tRNA aminoacylation | 2.13E-04 |
| 23 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 2.13E-04 |
| 24 | GO:0005980: glycogen catabolic process | 2.13E-04 |
| 25 | GO:0000476: maturation of 4.5S rRNA | 2.13E-04 |
| 26 | GO:0000967: rRNA 5'-end processing | 2.13E-04 |
| 27 | GO:0071482: cellular response to light stimulus | 2.25E-04 |
| 28 | GO:1900865: chloroplast RNA modification | 3.26E-04 |
| 29 | GO:0006352: DNA-templated transcription, initiation | 4.43E-04 |
| 30 | GO:0007154: cell communication | 4.76E-04 |
| 31 | GO:0018026: peptidyl-lysine monomethylation | 4.76E-04 |
| 32 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 4.76E-04 |
| 33 | GO:0001682: tRNA 5'-leader removal | 4.76E-04 |
| 34 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.76E-04 |
| 35 | GO:0034470: ncRNA processing | 4.76E-04 |
| 36 | GO:0010198: synergid death | 4.76E-04 |
| 37 | GO:0006739: NADP metabolic process | 4.76E-04 |
| 38 | GO:0009629: response to gravity | 4.76E-04 |
| 39 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.76E-04 |
| 40 | GO:0006435: threonyl-tRNA aminoacylation | 4.76E-04 |
| 41 | GO:0044208: 'de novo' AMP biosynthetic process | 4.76E-04 |
| 42 | GO:1900871: chloroplast mRNA modification | 4.76E-04 |
| 43 | GO:0005983: starch catabolic process | 5.07E-04 |
| 44 | GO:0071732: cellular response to nitric oxide | 7.24E-04 |
| 45 | GO:0090351: seedling development | 7.24E-04 |
| 46 | GO:0015940: pantothenate biosynthetic process | 7.74E-04 |
| 47 | GO:0005977: glycogen metabolic process | 7.74E-04 |
| 48 | GO:0090506: axillary shoot meristem initiation | 7.74E-04 |
| 49 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.74E-04 |
| 50 | GO:0009409: response to cold | 1.04E-03 |
| 51 | GO:2001141: regulation of RNA biosynthetic process | 1.10E-03 |
| 52 | GO:0009102: biotin biosynthetic process | 1.10E-03 |
| 53 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.10E-03 |
| 54 | GO:0009152: purine ribonucleotide biosynthetic process | 1.10E-03 |
| 55 | GO:0010239: chloroplast mRNA processing | 1.10E-03 |
| 56 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.10E-03 |
| 57 | GO:0006164: purine nucleotide biosynthetic process | 1.10E-03 |
| 58 | GO:0008615: pyridoxine biosynthetic process | 1.10E-03 |
| 59 | GO:0016556: mRNA modification | 1.10E-03 |
| 60 | GO:0007005: mitochondrion organization | 1.17E-03 |
| 61 | GO:0006730: one-carbon metabolic process | 1.17E-03 |
| 62 | GO:0071369: cellular response to ethylene stimulus | 1.27E-03 |
| 63 | GO:0009658: chloroplast organization | 1.33E-03 |
| 64 | GO:0071483: cellular response to blue light | 1.47E-03 |
| 65 | GO:0006734: NADH metabolic process | 1.47E-03 |
| 66 | GO:0044205: 'de novo' UMP biosynthetic process | 1.47E-03 |
| 67 | GO:0010021: amylopectin biosynthetic process | 1.47E-03 |
| 68 | GO:0051781: positive regulation of cell division | 1.47E-03 |
| 69 | GO:0022622: root system development | 1.47E-03 |
| 70 | GO:0010236: plastoquinone biosynthetic process | 1.87E-03 |
| 71 | GO:0016554: cytidine to uridine editing | 2.31E-03 |
| 72 | GO:0010190: cytochrome b6f complex assembly | 2.31E-03 |
| 73 | GO:0071281: cellular response to iron ion | 2.43E-03 |
| 74 | GO:0030488: tRNA methylation | 2.77E-03 |
| 75 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.77E-03 |
| 76 | GO:0010067: procambium histogenesis | 2.77E-03 |
| 77 | GO:0034389: lipid particle organization | 2.77E-03 |
| 78 | GO:0042372: phylloquinone biosynthetic process | 2.77E-03 |
| 79 | GO:1901259: chloroplast rRNA processing | 2.77E-03 |
| 80 | GO:0006458: 'de novo' protein folding | 2.77E-03 |
| 81 | GO:0009790: embryo development | 3.19E-03 |
| 82 | GO:0006400: tRNA modification | 3.26E-03 |
| 83 | GO:0032880: regulation of protein localization | 3.26E-03 |
| 84 | GO:0009772: photosynthetic electron transport in photosystem II | 3.26E-03 |
| 85 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.26E-03 |
| 86 | GO:0010196: nonphotochemical quenching | 3.26E-03 |
| 87 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 3.26E-03 |
| 88 | GO:0009627: systemic acquired resistance | 3.43E-03 |
| 89 | GO:0006413: translational initiation | 3.61E-03 |
| 90 | GO:0015995: chlorophyll biosynthetic process | 3.61E-03 |
| 91 | GO:2000070: regulation of response to water deprivation | 3.78E-03 |
| 92 | GO:0000105: histidine biosynthetic process | 3.78E-03 |
| 93 | GO:0006526: arginine biosynthetic process | 4.33E-03 |
| 94 | GO:0009932: cell tip growth | 4.33E-03 |
| 95 | GO:0022900: electron transport chain | 4.33E-03 |
| 96 | GO:0009657: plastid organization | 4.33E-03 |
| 97 | GO:0006098: pentose-phosphate shunt | 4.90E-03 |
| 98 | GO:0019432: triglyceride biosynthetic process | 4.90E-03 |
| 99 | GO:0043067: regulation of programmed cell death | 5.50E-03 |
| 100 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.50E-03 |
| 101 | GO:0006949: syncytium formation | 6.12E-03 |
| 102 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.12E-03 |
| 103 | GO:0006508: proteolysis | 6.18E-03 |
| 104 | GO:0010114: response to red light | 6.53E-03 |
| 105 | GO:0010015: root morphogenesis | 6.77E-03 |
| 106 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.77E-03 |
| 107 | GO:0009073: aromatic amino acid family biosynthetic process | 6.77E-03 |
| 108 | GO:0045037: protein import into chloroplast stroma | 7.44E-03 |
| 109 | GO:0006094: gluconeogenesis | 8.13E-03 |
| 110 | GO:2000012: regulation of auxin polar transport | 8.13E-03 |
| 111 | GO:0009266: response to temperature stimulus | 8.84E-03 |
| 112 | GO:0010020: chloroplast fission | 8.84E-03 |
| 113 | GO:0010207: photosystem II assembly | 8.84E-03 |
| 114 | GO:0009969: xyloglucan biosynthetic process | 9.58E-03 |
| 115 | GO:0006071: glycerol metabolic process | 1.03E-02 |
| 116 | GO:0000162: tryptophan biosynthetic process | 1.03E-02 |
| 117 | GO:0009116: nucleoside metabolic process | 1.11E-02 |
| 118 | GO:0016575: histone deacetylation | 1.19E-02 |
| 119 | GO:0048511: rhythmic process | 1.27E-02 |
| 120 | GO:0061077: chaperone-mediated protein folding | 1.27E-02 |
| 121 | GO:0031348: negative regulation of defense response | 1.36E-02 |
| 122 | GO:0019748: secondary metabolic process | 1.36E-02 |
| 123 | GO:0016226: iron-sulfur cluster assembly | 1.36E-02 |
| 124 | GO:0035428: hexose transmembrane transport | 1.36E-02 |
| 125 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.45E-02 |
| 126 | GO:0009306: protein secretion | 1.53E-02 |
| 127 | GO:0010089: xylem development | 1.53E-02 |
| 128 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.62E-02 |
| 129 | GO:0008284: positive regulation of cell proliferation | 1.62E-02 |
| 130 | GO:0008033: tRNA processing | 1.72E-02 |
| 131 | GO:0010087: phloem or xylem histogenesis | 1.72E-02 |
| 132 | GO:0006606: protein import into nucleus | 1.72E-02 |
| 133 | GO:0010197: polar nucleus fusion | 1.81E-02 |
| 134 | GO:0046323: glucose import | 1.81E-02 |
| 135 | GO:0009958: positive gravitropism | 1.81E-02 |
| 136 | GO:0042752: regulation of circadian rhythm | 1.91E-02 |
| 137 | GO:0006633: fatty acid biosynthetic process | 1.98E-02 |
| 138 | GO:0019252: starch biosynthetic process | 2.00E-02 |
| 139 | GO:0002229: defense response to oomycetes | 2.10E-02 |
| 140 | GO:0009630: gravitropism | 2.20E-02 |
| 141 | GO:0009828: plant-type cell wall loosening | 2.41E-02 |
| 142 | GO:0071805: potassium ion transmembrane transport | 2.52E-02 |
| 143 | GO:0000910: cytokinesis | 2.62E-02 |
| 144 | GO:0010027: thylakoid membrane organization | 2.73E-02 |
| 145 | GO:0001666: response to hypoxia | 2.73E-02 |
| 146 | GO:0018298: protein-chromophore linkage | 3.30E-02 |
| 147 | GO:0008219: cell death | 3.30E-02 |
| 148 | GO:0045893: positive regulation of transcription, DNA-templated | 3.62E-02 |
| 149 | GO:0048527: lateral root development | 3.66E-02 |
| 150 | GO:0009637: response to blue light | 3.91E-02 |
| 151 | GO:0009853: photorespiration | 3.91E-02 |
| 152 | GO:0045087: innate immune response | 3.91E-02 |
| 153 | GO:0005975: carbohydrate metabolic process | 4.24E-02 |
| 154 | GO:0006631: fatty acid metabolic process | 4.41E-02 |
| 155 | GO:0015979: photosynthesis | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015267: channel activity | 0.00E+00 |
| 2 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 3 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 4 | GO:0005048: signal sequence binding | 0.00E+00 |
| 5 | GO:0004019: adenylosuccinate synthase activity | 0.00E+00 |
| 6 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 7 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 8 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 10 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 11 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 12 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 13 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 14 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 15 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 16 | GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity | 0.00E+00 |
| 17 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 18 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.14E-06 |
| 19 | GO:0008237: metallopeptidase activity | 1.74E-05 |
| 20 | GO:0001053: plastid sigma factor activity | 3.29E-05 |
| 21 | GO:0016987: sigma factor activity | 3.29E-05 |
| 22 | GO:0005525: GTP binding | 6.74E-05 |
| 23 | GO:0004176: ATP-dependent peptidase activity | 7.11E-05 |
| 24 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.13E-04 |
| 25 | GO:0052857: NADPHX epimerase activity | 2.13E-04 |
| 26 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.13E-04 |
| 27 | GO:0005227: calcium activated cation channel activity | 2.13E-04 |
| 28 | GO:0004733: pyridoxamine-phosphate oxidase activity | 2.13E-04 |
| 29 | GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | 2.13E-04 |
| 30 | GO:0008184: glycogen phosphorylase activity | 2.13E-04 |
| 31 | GO:0004813: alanine-tRNA ligase activity | 2.13E-04 |
| 32 | GO:0004645: phosphorylase activity | 2.13E-04 |
| 33 | GO:0052856: NADHX epimerase activity | 2.13E-04 |
| 34 | GO:0044183: protein binding involved in protein folding | 4.43E-04 |
| 35 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.76E-04 |
| 36 | GO:0004047: aminomethyltransferase activity | 4.76E-04 |
| 37 | GO:0004817: cysteine-tRNA ligase activity | 4.76E-04 |
| 38 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 4.76E-04 |
| 39 | GO:0004829: threonine-tRNA ligase activity | 4.76E-04 |
| 40 | GO:0019156: isoamylase activity | 4.76E-04 |
| 41 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.76E-04 |
| 42 | GO:0070402: NADPH binding | 7.74E-04 |
| 43 | GO:0046524: sucrose-phosphate synthase activity | 7.74E-04 |
| 44 | GO:0003913: DNA photolyase activity | 7.74E-04 |
| 45 | GO:0005528: FK506 binding | 8.90E-04 |
| 46 | GO:0043621: protein self-association | 9.62E-04 |
| 47 | GO:0019201: nucleotide kinase activity | 1.10E-03 |
| 48 | GO:0016851: magnesium chelatase activity | 1.10E-03 |
| 49 | GO:0048487: beta-tubulin binding | 1.10E-03 |
| 50 | GO:0003723: RNA binding | 1.20E-03 |
| 51 | GO:0004659: prenyltransferase activity | 1.47E-03 |
| 52 | GO:0016279: protein-lysine N-methyltransferase activity | 1.47E-03 |
| 53 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.47E-03 |
| 54 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 1.87E-03 |
| 55 | GO:0004332: fructose-bisphosphate aldolase activity | 2.31E-03 |
| 56 | GO:0004526: ribonuclease P activity | 2.31E-03 |
| 57 | GO:0004556: alpha-amylase activity | 2.31E-03 |
| 58 | GO:0004144: diacylglycerol O-acyltransferase activity | 2.77E-03 |
| 59 | GO:0004017: adenylate kinase activity | 2.77E-03 |
| 60 | GO:0009881: photoreceptor activity | 3.26E-03 |
| 61 | GO:0003924: GTPase activity | 3.34E-03 |
| 62 | GO:0005337: nucleoside transmembrane transporter activity | 3.78E-03 |
| 63 | GO:0008312: 7S RNA binding | 3.78E-03 |
| 64 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.33E-03 |
| 65 | GO:0004222: metalloendopeptidase activity | 4.41E-03 |
| 66 | GO:0003743: translation initiation factor activity | 4.81E-03 |
| 67 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.06E-03 |
| 68 | GO:0008378: galactosyltransferase activity | 7.44E-03 |
| 69 | GO:0000049: tRNA binding | 7.44E-03 |
| 70 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.62E-03 |
| 71 | GO:0004565: beta-galactosidase activity | 8.13E-03 |
| 72 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.80E-03 |
| 73 | GO:0008083: growth factor activity | 8.84E-03 |
| 74 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.03E-02 |
| 75 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.03E-02 |
| 76 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.03E-02 |
| 77 | GO:0051536: iron-sulfur cluster binding | 1.11E-02 |
| 78 | GO:0004407: histone deacetylase activity | 1.11E-02 |
| 79 | GO:0015079: potassium ion transmembrane transporter activity | 1.19E-02 |
| 80 | GO:0051082: unfolded protein binding | 1.26E-02 |
| 81 | GO:0033612: receptor serine/threonine kinase binding | 1.27E-02 |
| 82 | GO:0022891: substrate-specific transmembrane transporter activity | 1.45E-02 |
| 83 | GO:0004519: endonuclease activity | 1.65E-02 |
| 84 | GO:0030170: pyridoxal phosphate binding | 1.75E-02 |
| 85 | GO:0016853: isomerase activity | 1.91E-02 |
| 86 | GO:0005355: glucose transmembrane transporter activity | 1.91E-02 |
| 87 | GO:0010181: FMN binding | 1.91E-02 |
| 88 | GO:0008483: transaminase activity | 2.52E-02 |
| 89 | GO:0016887: ATPase activity | 2.58E-02 |
| 90 | GO:0016597: amino acid binding | 2.62E-02 |
| 91 | GO:0000287: magnesium ion binding | 3.31E-02 |
| 92 | GO:0005096: GTPase activator activity | 3.42E-02 |
| 93 | GO:0030145: manganese ion binding | 3.66E-02 |
| 94 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.66E-02 |
| 95 | GO:0003746: translation elongation factor activity | 3.91E-02 |
| 96 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.91E-02 |
| 97 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.29E-02 |
| 98 | GO:0004185: serine-type carboxypeptidase activity | 4.68E-02 |