Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0090470: shoot organ boundary specification0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0031054: pre-miRNA processing0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0009106: lipoate metabolic process0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0015882: L-ascorbic acid transport0.00E+00
14GO:0018023: peptidyl-lysine trimethylation0.00E+00
15GO:0071474: cellular hyperosmotic response0.00E+00
16GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
17GO:0070125: mitochondrial translational elongation0.00E+00
18GO:0009249: protein lipoylation0.00E+00
19GO:0045038: protein import into chloroplast thylakoid membrane1.50E-04
20GO:0016123: xanthophyll biosynthetic process1.50E-04
21GO:0015995: chlorophyll biosynthetic process1.70E-04
22GO:0010190: cytochrome b6f complex assembly2.14E-04
23GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.14E-04
24GO:0009658: chloroplast organization2.86E-04
25GO:0000023: maltose metabolic process4.02E-04
26GO:0006419: alanyl-tRNA aminoacylation4.02E-04
27GO:0000476: maturation of 4.5S rRNA4.02E-04
28GO:0009443: pyridoxal 5'-phosphate salvage4.02E-04
29GO:0000967: rRNA 5'-end processing4.02E-04
30GO:0015671: oxygen transport4.02E-04
31GO:0043266: regulation of potassium ion transport4.02E-04
32GO:0006659: phosphatidylserine biosynthetic process4.02E-04
33GO:0043686: co-translational protein modification4.02E-04
34GO:2000021: regulation of ion homeostasis4.02E-04
35GO:1902458: positive regulation of stomatal opening4.02E-04
36GO:0010028: xanthophyll cycle4.02E-04
37GO:0048363: mucilage pectin metabolic process4.02E-04
38GO:0000105: histidine biosynthetic process4.66E-04
39GO:0032544: plastid translation5.69E-04
40GO:0010206: photosystem II repair6.82E-04
41GO:0019432: triglyceride biosynthetic process6.82E-04
42GO:0010198: synergid death8.71E-04
43GO:0009629: response to gravity8.71E-04
44GO:1900871: chloroplast mRNA modification8.71E-04
45GO:0006423: cysteinyl-tRNA aminoacylation8.71E-04
46GO:0006435: threonyl-tRNA aminoacylation8.71E-04
47GO:0007154: cell communication8.71E-04
48GO:0018026: peptidyl-lysine monomethylation8.71E-04
49GO:0071668: plant-type cell wall assembly8.71E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process8.71E-04
51GO:0051262: protein tetramerization8.71E-04
52GO:0034470: ncRNA processing8.71E-04
53GO:0006782: protoporphyrinogen IX biosynthetic process9.37E-04
54GO:0045036: protein targeting to chloroplast9.37E-04
55GO:0009089: lysine biosynthetic process via diaminopimelate1.08E-03
56GO:0045037: protein import into chloroplast stroma1.23E-03
57GO:2000012: regulation of auxin polar transport1.40E-03
58GO:0033591: response to L-ascorbic acid1.41E-03
59GO:0010589: leaf proximal/distal pattern formation1.41E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.41E-03
61GO:0051604: protein maturation1.41E-03
62GO:0015940: pantothenate biosynthetic process1.41E-03
63GO:0045493: xylan catabolic process1.41E-03
64GO:0090351: seedling development1.76E-03
65GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.04E-03
66GO:0010371: regulation of gibberellin biosynthetic process2.04E-03
67GO:0009102: biotin biosynthetic process2.04E-03
68GO:0015979: photosynthesis2.39E-03
69GO:0006413: translational initiation2.54E-03
70GO:0061077: chaperone-mediated protein folding2.65E-03
71GO:0009765: photosynthesis, light harvesting2.74E-03
72GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.74E-03
73GO:0022622: root system development2.74E-03
74GO:0006021: inositol biosynthetic process2.74E-03
75GO:0071483: cellular response to blue light2.74E-03
76GO:0010109: regulation of photosynthesis2.74E-03
77GO:0016120: carotene biosynthetic process3.51E-03
78GO:0031365: N-terminal protein amino acid modification3.51E-03
79GO:0009107: lipoate biosynthetic process3.51E-03
80GO:0016117: carotenoid biosynthetic process3.73E-03
81GO:0009793: embryo development ending in seed dormancy3.92E-03
82GO:0016554: cytidine to uridine editing4.35E-03
83GO:0032973: amino acid export4.35E-03
84GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.35E-03
85GO:0042026: protein refolding5.24E-03
86GO:0034389: lipid particle organization5.24E-03
87GO:0006458: 'de novo' protein folding5.24E-03
88GO:1901259: chloroplast rRNA processing5.24E-03
89GO:0030488: tRNA methylation5.24E-03
90GO:0043090: amino acid import6.19E-03
91GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.19E-03
92GO:0006400: tRNA modification6.19E-03
93GO:0015693: magnesium ion transport6.19E-03
94GO:0035196: production of miRNAs involved in gene silencing by miRNA6.19E-03
95GO:0032880: regulation of protein localization6.19E-03
96GO:0006353: DNA-templated transcription, termination7.20E-03
97GO:0006605: protein targeting7.20E-03
98GO:0006875: cellular metal ion homeostasis7.20E-03
99GO:2000070: regulation of response to water deprivation7.20E-03
100GO:0010027: thylakoid membrane organization7.77E-03
101GO:0071482: cellular response to light stimulus8.26E-03
102GO:0022900: electron transport chain8.26E-03
103GO:0098656: anion transmembrane transport9.38E-03
104GO:0080144: amino acid homeostasis9.38E-03
105GO:0006783: heme biosynthetic process9.38E-03
106GO:0009790: embryo development1.05E-02
107GO:0043067: regulation of programmed cell death1.06E-02
108GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
109GO:0010267: production of ta-siRNAs involved in RNA interference1.06E-02
110GO:1900865: chloroplast RNA modification1.06E-02
111GO:0048354: mucilage biosynthetic process involved in seed coat development1.06E-02
112GO:0031425: chloroplast RNA processing1.06E-02
113GO:0007568: aging1.18E-02
114GO:0006949: syncytium formation1.18E-02
115GO:0045087: innate immune response1.29E-02
116GO:0019684: photosynthesis, light reaction1.30E-02
117GO:0008285: negative regulation of cell proliferation1.30E-02
118GO:0006415: translational termination1.30E-02
119GO:1903507: negative regulation of nucleic acid-templated transcription1.30E-02
120GO:0006352: DNA-templated transcription, initiation1.30E-02
121GO:0009684: indoleacetic acid biosynthetic process1.30E-02
122GO:0010015: root morphogenesis1.30E-02
123GO:0005983: starch catabolic process1.44E-02
124GO:0006631: fatty acid metabolic process1.54E-02
125GO:0009725: response to hormone1.57E-02
126GO:0019853: L-ascorbic acid biosynthetic process1.86E-02
127GO:0071732: cellular response to nitric oxide1.86E-02
128GO:0006508: proteolysis1.92E-02
129GO:0000162: tryptophan biosynthetic process2.01E-02
130GO:0006071: glycerol metabolic process2.01E-02
131GO:0009409: response to cold2.18E-02
132GO:0042254: ribosome biogenesis2.31E-02
133GO:0008299: isoprenoid biosynthetic process2.32E-02
134GO:0016575: histone deacetylation2.32E-02
135GO:0007017: microtubule-based process2.32E-02
136GO:0010073: meristem maintenance2.32E-02
137GO:0016114: terpenoid biosynthetic process2.48E-02
138GO:0048511: rhythmic process2.48E-02
139GO:2000022: regulation of jasmonic acid mediated signaling pathway2.64E-02
140GO:0006730: one-carbon metabolic process2.64E-02
141GO:0007005: mitochondrion organization2.64E-02
142GO:0031348: negative regulation of defense response2.64E-02
143GO:0019748: secondary metabolic process2.64E-02
144GO:0005975: carbohydrate metabolic process2.70E-02
145GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.81E-02
146GO:0071369: cellular response to ethylene stimulus2.81E-02
147GO:0010227: floral organ abscission2.81E-02
148GO:0006012: galactose metabolic process2.81E-02
149GO:0009735: response to cytokinin2.84E-02
150GO:0009306: protein secretion2.99E-02
151GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-02
152GO:0008284: positive regulation of cell proliferation3.16E-02
153GO:0000271: polysaccharide biosynthetic process3.34E-02
154GO:0009958: positive gravitropism3.53E-02
155GO:0045489: pectin biosynthetic process3.53E-02
156GO:0010305: leaf vascular tissue pattern formation3.53E-02
157GO:0010197: polar nucleus fusion3.53E-02
158GO:0042752: regulation of circadian rhythm3.71E-02
159GO:0009646: response to absence of light3.71E-02
160GO:0009791: post-embryonic development3.90E-02
161GO:0008654: phospholipid biosynthetic process3.90E-02
162GO:0016032: viral process4.29E-02
163GO:0009630: gravitropism4.29E-02
164GO:0030163: protein catabolic process4.49E-02
165GO:0071281: cellular response to iron ion4.49E-02
166GO:0010090: trichome morphogenesis4.49E-02
167GO:1901657: glycosyl compound metabolic process4.49E-02
168GO:0009828: plant-type cell wall loosening4.69E-02
169GO:0006457: protein folding4.70E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0050613: delta14-sterol reductase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0043014: alpha-tubulin binding0.00E+00
15GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
16GO:0015229: L-ascorbic acid transporter activity0.00E+00
17GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
18GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
19GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
20GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
21GO:0005048: signal sequence binding0.00E+00
22GO:0004076: biotin synthase activity0.00E+00
23GO:0070402: NADPH binding6.71E-08
24GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.22E-06
25GO:0016851: magnesium chelatase activity5.48E-05
26GO:0004040: amidase activity1.50E-04
27GO:0004017: adenylate kinase activity2.88E-04
28GO:0005227: calcium activated cation channel activity4.02E-04
29GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.02E-04
30GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.02E-04
31GO:0004856: xylulokinase activity4.02E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity4.02E-04
33GO:0004813: alanine-tRNA ligase activity4.02E-04
34GO:0004853: uroporphyrinogen decarboxylase activity4.02E-04
35GO:0042586: peptide deformylase activity4.02E-04
36GO:0005080: protein kinase C binding4.02E-04
37GO:0015088: copper uptake transmembrane transporter activity4.02E-04
38GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.02E-04
39GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.02E-04
40GO:0005344: oxygen transporter activity4.02E-04
41GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.02E-04
42GO:0004033: aldo-keto reductase (NADP) activity4.66E-04
43GO:0005525: GTP binding8.44E-04
44GO:0004817: cysteine-tRNA ligase activity8.71E-04
45GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.71E-04
46GO:0016630: protochlorophyllide reductase activity8.71E-04
47GO:0004829: threonine-tRNA ligase activity8.71E-04
48GO:0004512: inositol-3-phosphate synthase activity8.71E-04
49GO:0010291: carotene beta-ring hydroxylase activity8.71E-04
50GO:0017118: lipoyltransferase activity8.71E-04
51GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.71E-04
52GO:0009977: proton motive force dependent protein transmembrane transporter activity8.71E-04
53GO:0016415: octanoyltransferase activity8.71E-04
54GO:0031072: heat shock protein binding1.40E-03
55GO:0003913: DNA photolyase activity1.41E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.41E-03
57GO:0008236: serine-type peptidase activity1.41E-03
58GO:0015462: ATPase-coupled protein transmembrane transporter activity1.41E-03
59GO:0019201: nucleotide kinase activity2.04E-03
60GO:0048487: beta-tubulin binding2.04E-03
61GO:0004792: thiosulfate sulfurtransferase activity2.04E-03
62GO:0016149: translation release factor activity, codon specific2.04E-03
63GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.04E-03
64GO:0043023: ribosomal large subunit binding2.04E-03
65GO:0035198: miRNA binding2.04E-03
66GO:0005528: FK506 binding2.18E-03
67GO:0004045: aminoacyl-tRNA hydrolase activity2.74E-03
68GO:0016987: sigma factor activity2.74E-03
69GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.74E-03
70GO:0009044: xylan 1,4-beta-xylosidase activity2.74E-03
71GO:0046556: alpha-L-arabinofuranosidase activity2.74E-03
72GO:0016279: protein-lysine N-methyltransferase activity2.74E-03
73GO:0001053: plastid sigma factor activity2.74E-03
74GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.41E-03
75GO:0003959: NADPH dehydrogenase activity3.51E-03
76GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
77GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.51E-03
78GO:0003743: translation initiation factor activity3.59E-03
79GO:0003924: GTPase activity3.75E-03
80GO:0042578: phosphoric ester hydrolase activity4.35E-03
81GO:0016832: aldehyde-lyase activity5.24E-03
82GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.24E-03
83GO:0005261: cation channel activity5.24E-03
84GO:0004144: diacylglycerol O-acyltransferase activity5.24E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.24E-03
86GO:0009881: photoreceptor activity6.19E-03
87GO:0051082: unfolded protein binding6.44E-03
88GO:0008312: 7S RNA binding7.20E-03
89GO:0043022: ribosome binding7.20E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.26E-03
91GO:0003747: translation release factor activity9.38E-03
92GO:0004252: serine-type endopeptidase activity9.80E-03
93GO:0005381: iron ion transmembrane transporter activity1.06E-02
94GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.18E-02
95GO:0003746: translation elongation factor activity1.29E-02
96GO:0044183: protein binding involved in protein folding1.30E-02
97GO:0047372: acylglycerol lipase activity1.30E-02
98GO:0000049: tRNA binding1.44E-02
99GO:0003725: double-stranded RNA binding1.57E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity1.57E-02
101GO:0015095: magnesium ion transmembrane transporter activity1.57E-02
102GO:0008083: growth factor activity1.71E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.71E-02
104GO:0008266: poly(U) RNA binding1.71E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
106GO:0003723: RNA binding1.83E-02
107GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.01E-02
108GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.01E-02
109GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.01E-02
110GO:0004407: histone deacetylase activity2.16E-02
111GO:0003714: transcription corepressor activity2.16E-02
112GO:0051536: iron-sulfur cluster binding2.16E-02
113GO:0051087: chaperone binding2.32E-02
114GO:0004176: ATP-dependent peptidase activity2.48E-02
115GO:0003729: mRNA binding2.60E-02
116GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.64E-02
117GO:0005509: calcium ion binding2.97E-02
118GO:0003756: protein disulfide isomerase activity2.99E-02
119GO:0008514: organic anion transmembrane transporter activity2.99E-02
120GO:0008536: Ran GTPase binding3.53E-02
121GO:0008080: N-acetyltransferase activity3.53E-02
122GO:0016853: isomerase activity3.71E-02
123GO:0004872: receptor activity3.90E-02
124GO:0042803: protein homodimerization activity3.90E-02
125GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.12E-02
126GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.83E-02
127GO:0008483: transaminase activity4.90E-02
128GO:0008237: metallopeptidase activity4.90E-02
129GO:0005200: structural constituent of cytoskeleton4.90E-02
<
Gene type



Gene DE type