GO Enrichment Analysis of Co-expressed Genes with
AT3G60320
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034972: histone H3-R26 methylation | 0.00E+00 |
| 2 | GO:0050776: regulation of immune response | 0.00E+00 |
| 3 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 4 | GO:0009606: tropism | 0.00E+00 |
| 5 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 6 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 7 | GO:0034971: histone H3-R17 methylation | 0.00E+00 |
| 8 | GO:0034970: histone H3-R2 methylation | 0.00E+00 |
| 9 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 10 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 11 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 3.71E-06 |
| 12 | GO:2000038: regulation of stomatal complex development | 5.37E-05 |
| 13 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.80E-05 |
| 14 | GO:0009734: auxin-activated signaling pathway | 1.54E-04 |
| 15 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.58E-04 |
| 16 | GO:0009926: auxin polar transport | 1.98E-04 |
| 17 | GO:0043971: histone H3-K18 acetylation | 2.84E-04 |
| 18 | GO:0010480: microsporocyte differentiation | 2.84E-04 |
| 19 | GO:0033206: meiotic cytokinesis | 2.84E-04 |
| 20 | GO:0010342: endosperm cellularization | 2.84E-04 |
| 21 | GO:0051013: microtubule severing | 2.84E-04 |
| 22 | GO:0034757: negative regulation of iron ion transport | 2.84E-04 |
| 23 | GO:0007389: pattern specification process | 3.44E-04 |
| 24 | GO:0009909: regulation of flower development | 3.83E-04 |
| 25 | GO:0030422: production of siRNA involved in RNA interference | 5.73E-04 |
| 26 | GO:0048829: root cap development | 5.73E-04 |
| 27 | GO:0010434: bract formation | 6.25E-04 |
| 28 | GO:1902884: positive regulation of response to oxidative stress | 6.25E-04 |
| 29 | GO:0070981: L-asparagine biosynthetic process | 6.25E-04 |
| 30 | GO:0048439: flower morphogenesis | 6.25E-04 |
| 31 | GO:0010271: regulation of chlorophyll catabolic process | 6.25E-04 |
| 32 | GO:0000256: allantoin catabolic process | 6.25E-04 |
| 33 | GO:0001736: establishment of planar polarity | 6.25E-04 |
| 34 | GO:0009786: regulation of asymmetric cell division | 6.25E-04 |
| 35 | GO:0018022: peptidyl-lysine methylation | 6.25E-04 |
| 36 | GO:0006529: asparagine biosynthetic process | 6.25E-04 |
| 37 | GO:2000123: positive regulation of stomatal complex development | 6.25E-04 |
| 38 | GO:0010254: nectary development | 6.25E-04 |
| 39 | GO:0080117: secondary growth | 1.01E-03 |
| 40 | GO:0010136: ureide catabolic process | 1.01E-03 |
| 41 | GO:0010589: leaf proximal/distal pattern formation | 1.01E-03 |
| 42 | GO:0009954: proximal/distal pattern formation | 1.01E-03 |
| 43 | GO:0009416: response to light stimulus | 1.10E-03 |
| 44 | GO:0044211: CTP salvage | 1.45E-03 |
| 45 | GO:0006145: purine nucleobase catabolic process | 1.45E-03 |
| 46 | GO:0009800: cinnamic acid biosynthetic process | 1.45E-03 |
| 47 | GO:0009650: UV protection | 1.45E-03 |
| 48 | GO:0046739: transport of virus in multicellular host | 1.45E-03 |
| 49 | GO:0009855: determination of bilateral symmetry | 1.45E-03 |
| 50 | GO:2000904: regulation of starch metabolic process | 1.45E-03 |
| 51 | GO:1902476: chloride transmembrane transport | 1.45E-03 |
| 52 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 1.94E-03 |
| 53 | GO:0000914: phragmoplast assembly | 1.94E-03 |
| 54 | GO:0044206: UMP salvage | 1.94E-03 |
| 55 | GO:0044205: 'de novo' UMP biosynthetic process | 1.94E-03 |
| 56 | GO:1900864: mitochondrial RNA modification | 1.94E-03 |
| 57 | GO:0030308: negative regulation of cell growth | 2.48E-03 |
| 58 | GO:0010375: stomatal complex patterning | 2.48E-03 |
| 59 | GO:0009616: virus induced gene silencing | 2.48E-03 |
| 60 | GO:0071493: cellular response to UV-B | 2.48E-03 |
| 61 | GO:0006544: glycine metabolic process | 2.48E-03 |
| 62 | GO:1902183: regulation of shoot apical meristem development | 2.48E-03 |
| 63 | GO:0016123: xanthophyll biosynthetic process | 2.48E-03 |
| 64 | GO:0032876: negative regulation of DNA endoreduplication | 2.48E-03 |
| 65 | GO:0009958: positive gravitropism | 2.61E-03 |
| 66 | GO:0010305: leaf vascular tissue pattern formation | 2.61E-03 |
| 67 | GO:0042176: regulation of protein catabolic process | 3.06E-03 |
| 68 | GO:0010315: auxin efflux | 3.06E-03 |
| 69 | GO:0006559: L-phenylalanine catabolic process | 3.06E-03 |
| 70 | GO:0006206: pyrimidine nucleobase metabolic process | 3.06E-03 |
| 71 | GO:0048831: regulation of shoot system development | 3.06E-03 |
| 72 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.06E-03 |
| 73 | GO:0006563: L-serine metabolic process | 3.06E-03 |
| 74 | GO:0010405: arabinogalactan protein metabolic process | 3.06E-03 |
| 75 | GO:0035194: posttranscriptional gene silencing by RNA | 3.06E-03 |
| 76 | GO:0009723: response to ethylene | 3.14E-03 |
| 77 | GO:0010090: trichome morphogenesis | 3.66E-03 |
| 78 | GO:0000911: cytokinesis by cell plate formation | 3.68E-03 |
| 79 | GO:0080060: integument development | 3.68E-03 |
| 80 | GO:0010014: meristem initiation | 3.68E-03 |
| 81 | GO:2000033: regulation of seed dormancy process | 3.68E-03 |
| 82 | GO:0009082: branched-chain amino acid biosynthetic process | 3.68E-03 |
| 83 | GO:0048509: regulation of meristem development | 3.68E-03 |
| 84 | GO:0009099: valine biosynthetic process | 3.68E-03 |
| 85 | GO:0030488: tRNA methylation | 3.68E-03 |
| 86 | GO:2000037: regulation of stomatal complex patterning | 3.68E-03 |
| 87 | GO:0009955: adaxial/abaxial pattern specification | 3.68E-03 |
| 88 | GO:0010252: auxin homeostasis | 3.89E-03 |
| 89 | GO:0048437: floral organ development | 4.34E-03 |
| 90 | GO:0006821: chloride transport | 4.34E-03 |
| 91 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 4.34E-03 |
| 92 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 4.34E-03 |
| 93 | GO:0009610: response to symbiotic fungus | 4.34E-03 |
| 94 | GO:0006955: immune response | 4.34E-03 |
| 95 | GO:0010029: regulation of seed germination | 4.91E-03 |
| 96 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 5.03E-03 |
| 97 | GO:0030162: regulation of proteolysis | 5.03E-03 |
| 98 | GO:0042255: ribosome assembly | 5.03E-03 |
| 99 | GO:0046620: regulation of organ growth | 5.03E-03 |
| 100 | GO:0048766: root hair initiation | 5.03E-03 |
| 101 | GO:0009733: response to auxin | 5.58E-03 |
| 102 | GO:0001510: RNA methylation | 5.77E-03 |
| 103 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.77E-03 |
| 104 | GO:0009097: isoleucine biosynthetic process | 5.77E-03 |
| 105 | GO:0006526: arginine biosynthetic process | 5.77E-03 |
| 106 | GO:0044030: regulation of DNA methylation | 5.77E-03 |
| 107 | GO:0010093: specification of floral organ identity | 5.77E-03 |
| 108 | GO:0010311: lateral root formation | 6.37E-03 |
| 109 | GO:0000160: phosphorelay signal transduction system | 6.37E-03 |
| 110 | GO:0048507: meristem development | 6.54E-03 |
| 111 | GO:2000024: regulation of leaf development | 6.54E-03 |
| 112 | GO:0000373: Group II intron splicing | 6.54E-03 |
| 113 | GO:0009051: pentose-phosphate shunt, oxidative branch | 6.54E-03 |
| 114 | GO:0048364: root development | 6.73E-03 |
| 115 | GO:0006349: regulation of gene expression by genetic imprinting | 7.35E-03 |
| 116 | GO:0031425: chloroplast RNA processing | 7.35E-03 |
| 117 | GO:0035999: tetrahydrofolate interconversion | 7.35E-03 |
| 118 | GO:0006995: cellular response to nitrogen starvation | 8.19E-03 |
| 119 | GO:0010048: vernalization response | 8.19E-03 |
| 120 | GO:0010072: primary shoot apical meristem specification | 9.06E-03 |
| 121 | GO:0048229: gametophyte development | 9.06E-03 |
| 122 | GO:0048765: root hair cell differentiation | 9.06E-03 |
| 123 | GO:0010582: floral meristem determinacy | 9.96E-03 |
| 124 | GO:0008361: regulation of cell size | 9.96E-03 |
| 125 | GO:0006006: glucose metabolic process | 1.09E-02 |
| 126 | GO:0010075: regulation of meristem growth | 1.09E-02 |
| 127 | GO:0009767: photosynthetic electron transport chain | 1.09E-02 |
| 128 | GO:0009658: chloroplast organization | 1.17E-02 |
| 129 | GO:0010143: cutin biosynthetic process | 1.19E-02 |
| 130 | GO:0006541: glutamine metabolic process | 1.19E-02 |
| 131 | GO:0009934: regulation of meristem structural organization | 1.19E-02 |
| 132 | GO:0042538: hyperosmotic salinity response | 1.25E-02 |
| 133 | GO:0009825: multidimensional cell growth | 1.29E-02 |
| 134 | GO:0080188: RNA-directed DNA methylation | 1.29E-02 |
| 135 | GO:0009736: cytokinin-activated signaling pathway | 1.34E-02 |
| 136 | GO:0006071: glycerol metabolic process | 1.39E-02 |
| 137 | GO:0009863: salicylic acid mediated signaling pathway | 1.50E-02 |
| 138 | GO:0010187: negative regulation of seed germination | 1.50E-02 |
| 139 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.50E-02 |
| 140 | GO:0043622: cortical microtubule organization | 1.60E-02 |
| 141 | GO:0006306: DNA methylation | 1.72E-02 |
| 142 | GO:0003333: amino acid transmembrane transport | 1.72E-02 |
| 143 | GO:0016998: cell wall macromolecule catabolic process | 1.72E-02 |
| 144 | GO:0006355: regulation of transcription, DNA-templated | 1.76E-02 |
| 145 | GO:0009740: gibberellic acid mediated signaling pathway | 1.80E-02 |
| 146 | GO:0006351: transcription, DNA-templated | 1.94E-02 |
| 147 | GO:0071215: cellular response to abscisic acid stimulus | 1.95E-02 |
| 148 | GO:0009686: gibberellin biosynthetic process | 1.95E-02 |
| 149 | GO:0010082: regulation of root meristem growth | 1.95E-02 |
| 150 | GO:0010227: floral organ abscission | 1.95E-02 |
| 151 | GO:0006284: base-excision repair | 2.07E-02 |
| 152 | GO:0010091: trichome branching | 2.07E-02 |
| 153 | GO:0006468: protein phosphorylation | 2.14E-02 |
| 154 | GO:0070417: cellular response to cold | 2.19E-02 |
| 155 | GO:0009793: embryo development ending in seed dormancy | 2.25E-02 |
| 156 | GO:0000226: microtubule cytoskeleton organization | 2.31E-02 |
| 157 | GO:0010501: RNA secondary structure unwinding | 2.31E-02 |
| 158 | GO:0010087: phloem or xylem histogenesis | 2.31E-02 |
| 159 | GO:0048653: anther development | 2.31E-02 |
| 160 | GO:0042631: cellular response to water deprivation | 2.31E-02 |
| 161 | GO:0009960: endosperm development | 2.44E-02 |
| 162 | GO:0046323: glucose import | 2.44E-02 |
| 163 | GO:0048544: recognition of pollen | 2.57E-02 |
| 164 | GO:0009646: response to absence of light | 2.57E-02 |
| 165 | GO:0006397: mRNA processing | 2.65E-02 |
| 166 | GO:0071554: cell wall organization or biogenesis | 2.83E-02 |
| 167 | GO:0080156: mitochondrial mRNA modification | 2.83E-02 |
| 168 | GO:0031047: gene silencing by RNA | 2.97E-02 |
| 169 | GO:0032502: developmental process | 2.97E-02 |
| 170 | GO:0009630: gravitropism | 2.97E-02 |
| 171 | GO:0071281: cellular response to iron ion | 3.11E-02 |
| 172 | GO:0009639: response to red or far red light | 3.25E-02 |
| 173 | GO:0009567: double fertilization forming a zygote and endosperm | 3.25E-02 |
| 174 | GO:0007267: cell-cell signaling | 3.39E-02 |
| 175 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.46E-02 |
| 176 | GO:0000910: cytokinesis | 3.54E-02 |
| 177 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.70E-02 |
| 178 | GO:0016567: protein ubiquitination | 3.73E-02 |
| 179 | GO:0008380: RNA splicing | 3.94E-02 |
| 180 | GO:0009832: plant-type cell wall biogenesis | 4.60E-02 |
| 181 | GO:0048767: root hair elongation | 4.60E-02 |
| 182 | GO:0006811: ion transport | 4.76E-02 |
| 183 | GO:0010218: response to far red light | 4.76E-02 |
| 184 | GO:0030154: cell differentiation | 4.80E-02 |
| 185 | GO:0009910: negative regulation of flower development | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004038: allantoinase activity | 0.00E+00 |
| 2 | GO:0004455: ketol-acid reductoisomerase activity | 0.00E+00 |
| 3 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 3.71E-06 |
| 4 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 3.71E-06 |
| 5 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 3.71E-06 |
| 6 | GO:0032549: ribonucleoside binding | 1.33E-05 |
| 7 | GO:0008469: histone-arginine N-methyltransferase activity | 1.33E-05 |
| 8 | GO:0003727: single-stranded RNA binding | 1.91E-04 |
| 9 | GO:0042834: peptidoglycan binding | 2.84E-04 |
| 10 | GO:0004071: aspartate-ammonia ligase activity | 2.84E-04 |
| 11 | GO:0008568: microtubule-severing ATPase activity | 2.84E-04 |
| 12 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 2.84E-04 |
| 13 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.84E-04 |
| 14 | GO:0004016: adenylate cyclase activity | 2.84E-04 |
| 15 | GO:0009672: auxin:proton symporter activity | 4.91E-04 |
| 16 | GO:0009884: cytokinin receptor activity | 6.25E-04 |
| 17 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 6.25E-04 |
| 18 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 6.61E-04 |
| 19 | GO:0001054: RNA polymerase I activity | 6.61E-04 |
| 20 | GO:0010329: auxin efflux transmembrane transporter activity | 8.57E-04 |
| 21 | GO:0052722: fatty acid in-chain hydroxylase activity | 1.01E-03 |
| 22 | GO:0017150: tRNA dihydrouridine synthase activity | 1.01E-03 |
| 23 | GO:0045548: phenylalanine ammonia-lyase activity | 1.01E-03 |
| 24 | GO:0070181: small ribosomal subunit rRNA binding | 1.01E-03 |
| 25 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.01E-03 |
| 26 | GO:0016805: dipeptidase activity | 1.01E-03 |
| 27 | GO:0005034: osmosensor activity | 1.01E-03 |
| 28 | GO:0016707: gibberellin 3-beta-dioxygenase activity | 1.01E-03 |
| 29 | GO:0004180: carboxypeptidase activity | 1.01E-03 |
| 30 | GO:0004674: protein serine/threonine kinase activity | 1.09E-03 |
| 31 | GO:0005354: galactose transmembrane transporter activity | 1.45E-03 |
| 32 | GO:0010328: auxin influx transmembrane transporter activity | 1.94E-03 |
| 33 | GO:0010385: double-stranded methylated DNA binding | 1.94E-03 |
| 34 | GO:0019199: transmembrane receptor protein kinase activity | 1.94E-03 |
| 35 | GO:0005253: anion channel activity | 1.94E-03 |
| 36 | GO:0016279: protein-lysine N-methyltransferase activity | 1.94E-03 |
| 37 | GO:0004845: uracil phosphoribosyltransferase activity | 1.94E-03 |
| 38 | GO:0010011: auxin binding | 1.94E-03 |
| 39 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.94E-03 |
| 40 | GO:0004372: glycine hydroxymethyltransferase activity | 2.48E-03 |
| 41 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.48E-03 |
| 42 | GO:0005247: voltage-gated chloride channel activity | 3.06E-03 |
| 43 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.06E-03 |
| 44 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.68E-03 |
| 45 | GO:0004849: uridine kinase activity | 3.68E-03 |
| 46 | GO:0019900: kinase binding | 3.68E-03 |
| 47 | GO:0016301: kinase activity | 4.02E-03 |
| 48 | GO:0042803: protein homodimerization activity | 4.93E-03 |
| 49 | GO:0004871: signal transducer activity | 4.93E-03 |
| 50 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 5.77E-03 |
| 51 | GO:0008173: RNA methyltransferase activity | 5.77E-03 |
| 52 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 6.54E-03 |
| 53 | GO:0000989: transcription factor activity, transcription factor binding | 6.54E-03 |
| 54 | GO:0003697: single-stranded DNA binding | 7.68E-03 |
| 55 | GO:0004673: protein histidine kinase activity | 8.19E-03 |
| 56 | GO:0008171: O-methyltransferase activity | 8.19E-03 |
| 57 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.09E-02 |
| 58 | GO:0031072: heat shock protein binding | 1.09E-02 |
| 59 | GO:0000155: phosphorelay sensor kinase activity | 1.09E-02 |
| 60 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.19E-02 |
| 61 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.34E-02 |
| 62 | GO:0003690: double-stranded DNA binding | 1.39E-02 |
| 63 | GO:0031625: ubiquitin protein ligase binding | 1.49E-02 |
| 64 | GO:0008134: transcription factor binding | 1.50E-02 |
| 65 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.60E-02 |
| 66 | GO:0043424: protein histidine kinase binding | 1.60E-02 |
| 67 | GO:0005215: transporter activity | 1.68E-02 |
| 68 | GO:0003735: structural constituent of ribosome | 1.69E-02 |
| 69 | GO:0033612: receptor serine/threonine kinase binding | 1.72E-02 |
| 70 | GO:0004650: polygalacturonase activity | 1.75E-02 |
| 71 | GO:0018024: histone-lysine N-methyltransferase activity | 2.19E-02 |
| 72 | GO:0003723: RNA binding | 2.19E-02 |
| 73 | GO:0004402: histone acetyltransferase activity | 2.31E-02 |
| 74 | GO:0001085: RNA polymerase II transcription factor binding | 2.44E-02 |
| 75 | GO:0005355: glucose transmembrane transporter activity | 2.57E-02 |
| 76 | GO:0016829: lyase activity | 2.59E-02 |
| 77 | GO:0019901: protein kinase binding | 2.70E-02 |
| 78 | GO:0005524: ATP binding | 2.85E-02 |
| 79 | GO:0000156: phosphorelay response regulator activity | 3.11E-02 |
| 80 | GO:0016759: cellulose synthase activity | 3.25E-02 |
| 81 | GO:0008017: microtubule binding | 3.46E-02 |
| 82 | GO:0016413: O-acetyltransferase activity | 3.54E-02 |
| 83 | GO:0004806: triglyceride lipase activity | 4.13E-02 |
| 84 | GO:0004004: ATP-dependent RNA helicase activity | 4.13E-02 |
| 85 | GO:0008168: methyltransferase activity | 4.90E-02 |
| 86 | GO:0050897: cobalt ion binding | 4.93E-02 |
| 87 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.93E-02 |
| 88 | GO:0046982: protein heterodimerization activity | 4.99E-02 |